Wall clock time and date at job start Mon Mar 30 2020 07:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 H 1.09000 * 109.46996 * 305.37015 * 3 2 1 5 5 C 1.50692 * 109.47284 * 185.36974 * 3 2 1 6 6 H 1.08005 * 120.00193 * 244.73153 * 5 3 2 7 7 C 1.37875 * 120.00313 * 64.73064 * 5 3 2 8 8 N 1.31516 * 120.00617 * 195.62712 * 7 5 3 9 9 Si 1.86806 * 119.99946 * 15.62431 * 7 5 3 10 10 H 1.48506 * 109.47033 * 90.26184 * 9 7 5 11 11 H 1.48491 * 109.47370 * 210.26174 * 9 7 5 12 12 H 1.48499 * 109.47234 * 330.26504 * 9 7 5 13 13 N 1.46894 * 109.46962 * 65.36801 * 3 2 1 14 14 C 1.46904 * 111.00455 * 252.68387 * 13 3 2 15 15 H 1.08999 * 112.85891 * 30.86902 * 14 13 3 16 16 C 1.53848 * 113.63008 * 259.62698 * 14 13 3 17 17 C 1.53845 * 87.14320 * 270.63026 * 16 14 13 18 18 C 1.53386 * 113.63520 * 162.12029 * 14 13 3 19 19 C 1.52730 * 113.56087 * 334.70767 * 18 14 13 20 20 C 1.53139 * 109.23080 * 172.52570 * 19 18 14 21 21 C 1.52963 * 109.43489 * 57.83445 * 20 19 18 22 22 C 1.52973 * 109.70377 * 298.31323 * 21 20 19 23 23 C 1.52720 * 113.55270 * 203.88107 * 18 14 13 24 24 H 1.09003 * 109.47020 * 175.40257 * 1 2 3 25 25 H 1.09003 * 109.47437 * 55.40409 * 1 2 3 26 26 H 1.08999 * 109.47360 * 295.39946 * 1 2 3 27 27 H 1.09005 * 109.47196 * 120.00035 * 2 1 3 28 28 H 1.09006 * 109.47034 * 240.00168 * 2 1 3 29 29 H 0.96995 * 120.00195 * 179.97438 * 8 7 5 30 30 H 1.00902 * 111.00114 * 128.72839 * 13 3 2 31 31 H 1.09006 * 113.60629 * 25.19130 * 16 14 13 32 32 H 1.08998 * 113.60662 * 156.06618 * 16 14 13 33 33 H 1.09009 * 113.63055 * 89.36544 * 17 16 14 34 34 H 1.08994 * 113.63834 * 220.23476 * 17 16 14 35 35 H 1.08992 * 109.51255 * 292.45463 * 19 18 14 36 36 H 1.09000 * 109.50405 * 52.60007 * 19 18 14 37 37 H 1.08999 * 109.47935 * 297.84347 * 20 19 18 38 38 H 1.09005 * 109.47547 * 177.82648 * 20 19 18 39 39 H 1.09002 * 109.43659 * 178.24052 * 21 20 19 40 40 H 1.09002 * 109.39310 * 58.35843 * 21 20 19 41 41 H 1.08996 * 109.47431 * 301.69513 * 22 21 20 42 42 H 1.08999 * 109.48676 * 181.67946 * 22 21 20 43 43 H 1.08998 * 109.51317 * 307.40421 * 23 18 14 44 44 H 1.09006 * 109.51178 * 67.55639 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9833 -0.8380 5 6 3.5410 1.4446 -0.1330 6 1 4.1542 1.8180 0.6740 7 6 4.1318 0.9698 -1.2847 8 7 5.4150 0.6817 -1.2951 9 14 3.1096 0.7355 -2.8306 10 1 3.1352 1.9836 -3.6349 11 1 3.6722 -0.3812 -3.6316 12 1 1.7086 0.4179 -2.4542 13 7 1.6590 2.0965 1.2589 14 6 0.5821 3.0716 1.0408 15 1 -0.0819 2.7932 0.2225 16 6 1.0740 4.5275 0.9677 17 6 0.8827 4.5878 2.4930 18 6 -0.1572 3.4687 2.3247 19 6 -0.0936 2.4056 3.4195 20 6 -0.6949 2.9726 4.7087 21 6 -2.1348 3.4169 4.4463 22 6 -2.1487 4.5247 3.3914 23 6 -1.5732 3.9853 2.0786 24 1 -0.3633 -1.0244 -0.0824 25 1 -0.3634 0.5835 -0.8460 26 1 -0.3634 0.4408 0.9283 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 5.8305 0.3474 -2.1052 30 1 2.4574 2.5314 1.6966 31 1 2.1138 4.6218 0.6542 32 1 0.4036 5.1876 0.4174 33 1 1.7649 4.2833 3.0564 34 1 0.4606 5.5295 2.8437 35 1 -0.6605 1.5283 3.1085 36 1 0.9451 2.1254 3.5947 37 1 -0.1053 3.8276 5.0395 38 1 -0.6867 2.2044 5.4821 39 1 -2.5732 3.7916 5.3713 40 1 -2.7161 2.5674 4.0876 41 1 -1.5432 5.3627 3.7365 42 1 -3.1732 4.8592 3.2288 43 1 -1.5456 4.7843 1.3378 44 1 -2.1995 3.1711 1.7139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694467933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:24 Heat of formation + Delta-G solvation = -22.849549 kcal Electronic energy + Delta-G solvation = -20009.061233 eV Core-core repulsion = 17345.882009 eV Total energy + Delta-G solvation = -2663.179224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45941 -37.83889 -36.12318 -34.11393 -32.04310 -31.47521 -29.31087 -28.84758 -25.42987 -24.35858 -23.65200 -23.09079 -21.40402 -20.97240 -19.31059 -18.30630 -17.27557 -16.50034 -16.09015 -15.48675 -15.36484 -14.94533 -14.68842 -14.61257 -14.45175 -14.21514 -13.76764 -13.61926 -13.37825 -13.15522 -12.86178 -12.77113 -12.64459 -12.44340 -12.17939 -11.97784 -11.78172 -11.70096 -11.55825 -11.48761 -11.26857 -11.11184 -10.76419 -10.68688 -10.59017 -10.34557 -8.94665 -8.33852 -6.32600 1.31179 1.35176 1.45540 2.32987 3.00877 3.40759 3.67038 3.87050 3.95528 4.10780 4.15431 4.37671 4.42313 4.49805 4.54899 4.56324 4.56901 4.66354 4.78086 4.78991 4.88080 4.91562 4.94173 4.96622 5.01309 5.10365 5.20463 5.24313 5.28743 5.31427 5.35758 5.37939 5.41531 5.48851 5.52867 5.58555 5.60000 5.75157 5.80804 5.82664 6.08764 6.52441 6.73202 6.91849 7.33545 8.82574 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032583 B = 0.006114 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.148791 B = 4578.576569 C = 4720.665826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.201 3.799 4 H 0.003 0.997 5 C -0.536 4.536 6 H 0.036 0.964 7 C 0.024 3.976 8 N -0.940 5.940 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.227 1.227 13 N -0.652 5.652 14 C 0.070 3.930 15 H 0.067 0.933 16 C -0.176 4.176 17 C -0.118 4.118 18 C -0.058 4.058 19 C -0.084 4.084 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.092 4.092 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.265 0.735 30 H 0.332 0.668 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 6.907 8.156 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C 0.091 3.909 4 H 0.020 0.980 5 C -0.575 4.575 6 H 0.054 0.946 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.748 3.252 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.150 1.150 13 N -0.280 5.280 14 C -0.041 4.041 15 H 0.085 0.915 16 C -0.215 4.215 17 C -0.155 4.155 18 C -0.059 4.059 19 C -0.122 4.122 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.534 6.310 8.246 20.378 hybrid contribution 1.225 0.414 -1.454 1.946 sum -16.308 6.724 6.793 18.903 Atomic orbital electron populations 1.21680 0.95413 1.00727 1.01318 1.21753 0.95527 0.97933 0.99388 1.19290 0.91951 0.91916 0.87739 0.97963 1.21626 0.91949 1.42022 1.01859 0.94626 1.25720 0.95724 0.93974 1.02100 1.70119 1.13494 1.45071 1.29206 0.86216 0.81811 0.77743 0.79415 1.20493 1.21300 1.15019 1.60416 1.11952 1.31271 1.24372 1.22824 0.94058 0.89691 0.97512 0.91468 1.23645 1.00512 0.99206 0.98130 1.22843 0.98704 0.99060 0.94924 1.21668 0.94477 0.95236 0.94517 1.21150 1.00393 0.96740 0.93936 1.21545 0.96522 1.00366 0.96974 1.21489 0.96265 0.98532 0.98986 1.21483 1.00893 0.98041 0.94444 1.21278 0.93422 1.00222 0.98065 0.92849 0.94131 0.91821 0.93672 0.94689 0.92610 0.84978 0.93841 0.89179 0.91431 0.90421 0.93241 0.92922 0.92317 0.92275 0.91289 0.92389 0.91897 0.90977 0.91718 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.14 71.98 0.66 -3.99 16 2 C -0.11 -4.64 4.90 30.59 0.15 -4.49 16 3 C 0.20 9.23 1.68 44.17 0.07 9.30 16 4 H 0.00 0.13 6.08 -2.39 -0.01 0.11 16 5 C -0.54 -30.23 9.02 25.60 0.23 -30.00 16 6 H 0.04 2.22 7.63 -2.91 -0.02 2.20 16 7 C 0.02 1.36 5.33 84.65 0.45 1.81 16 8 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 9 Si 0.92 43.88 25.80 68.60 1.77 45.65 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.23 -9.88 5.50 99.48 0.55 -9.33 16 13 N -0.65 -25.58 4.79 -471.20 -2.25 -27.84 16 14 C 0.07 2.28 2.82 45.33 0.13 2.41 16 15 H 0.07 2.25 7.31 -2.39 -0.02 2.24 16 16 C -0.18 -5.26 7.28 31.17 0.23 -5.04 16 17 C -0.12 -3.05 6.57 31.11 0.20 -2.85 16 18 C -0.06 -1.49 0.74 -52.00 -0.04 -1.53 16 19 C -0.08 -2.22 4.68 30.55 0.14 -2.08 16 20 C -0.12 -2.43 5.85 30.63 0.18 -2.26 16 21 C -0.12 -2.03 5.86 30.57 0.18 -1.85 16 22 C -0.11 -1.91 5.84 30.63 0.18 -1.73 16 23 C -0.09 -1.93 5.03 30.55 0.15 -1.78 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 2.11 7.53 -2.39 -0.02 2.09 16 27 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.03 1.58 4.97 -2.38 -0.01 1.57 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 30 H 0.33 13.97 7.17 -89.69 -0.64 13.32 16 31 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 33 H 0.07 1.90 7.89 -2.38 -0.02 1.88 16 34 H 0.08 1.71 7.38 -2.39 -0.02 1.69 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 1.61 7.41 -2.39 -0.02 1.59 16 37 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 38 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.07 7.39 -2.39 -0.02 1.05 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.30 7.31 -2.39 -0.02 1.29 16 44 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -61.22 322.38 2.88 -58.34 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.14 Total: 26.18 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.92 Total: -44.06 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.96 Total: -86.11 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.77 Total: 45.65 kcal Total: -61.22 2.88 -58.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694467933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.491 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds