Wall clock time and date at job start Mon Mar 30 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47694 * 2 1 4 4 H 1.09005 * 109.46745 * 54.57047 * 3 2 1 5 5 C 1.50696 * 109.47480 * 174.57355 * 3 2 1 6 6 H 1.08001 * 120.00018 * 119.99901 * 5 3 2 7 7 C 1.37877 * 120.00003 * 300.00153 * 5 3 2 8 8 N 1.31519 * 119.99904 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46941 * 119.99955 * 9 7 5 12 12 H 1.48502 * 109.46871 * 239.99843 * 9 7 5 13 13 N 1.46901 * 109.46853 * 294.57600 * 3 2 1 14 14 C 1.46899 * 110.99805 * 152.59323 * 13 3 2 15 15 H 1.09008 * 112.86532 * 25.04363 * 14 13 3 16 16 C 1.53847 * 113.71141 * 253.72093 * 14 13 3 17 17 C 1.53847 * 87.14371 * 220.30490 * 16 14 13 18 18 C 1.53390 * 113.63057 * 156.29015 * 14 13 3 19 19 C 1.52731 * 113.55827 * 254.42428 * 18 14 13 20 20 C 1.53142 * 109.23921 * 187.45256 * 19 18 14 21 21 C 1.52969 * 109.43047 * 302.16501 * 20 19 18 22 22 C 1.52975 * 109.66070 * 61.71686 * 21 20 19 23 23 C 1.52720 * 113.55082 * 25.24843 * 18 14 13 24 24 H 1.09004 * 109.46709 * 301.53486 * 1 2 3 25 25 H 1.09002 * 109.46897 * 61.52730 * 1 2 3 26 26 H 1.08995 * 109.47681 * 181.53357 * 1 2 3 27 27 H 1.09001 * 109.46931 * 239.99900 * 2 1 3 28 28 H 1.08999 * 109.47278 * 120.00111 * 2 1 3 29 29 H 0.97000 * 119.99803 * 179.97438 * 8 7 5 30 30 H 1.00897 * 110.99999 * 28.64387 * 13 3 2 31 31 H 1.08998 * 113.60829 * 334.87160 * 16 14 13 32 32 H 1.09000 * 113.60501 * 105.66216 * 16 14 13 33 33 H 1.08993 * 113.63532 * 270.63576 * 17 16 14 34 34 H 1.09003 * 113.62730 * 139.67141 * 17 16 14 35 35 H 1.09001 * 109.50474 * 67.52184 * 19 18 14 36 36 H 1.09001 * 109.50568 * 307.38055 * 19 18 14 37 37 H 1.08997 * 109.47526 * 182.18118 * 20 19 18 38 38 H 1.08996 * 109.47808 * 62.15194 * 20 19 18 39 39 H 1.09001 * 109.43116 * 181.76026 * 21 20 19 40 40 H 1.08994 * 109.43681 * 301.67312 * 21 20 19 41 41 H 1.09001 * 109.47495 * 58.27578 * 22 21 20 42 42 H 1.09002 * 109.47714 * 178.29653 * 22 21 20 43 43 H 1.08996 * 109.51466 * 292.47944 * 23 18 14 44 44 H 1.09003 * 109.50952 * 52.61873 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5996 1.9836 0.8374 5 6 3.5411 1.4445 0.1344 6 1 4.1518 1.8871 -0.6386 7 6 4.1347 0.8813 1.2441 8 7 3.3909 0.3418 2.1851 9 14 5.9953 0.8832 1.4103 10 1 6.5974 1.5444 0.2247 11 1 6.3817 1.6219 2.6392 12 1 6.4857 -0.5156 1.4987 13 7 1.6603 2.0961 -1.2595 14 6 1.5248 3.5477 -1.0793 15 1 2.1163 3.9281 -0.2464 16 6 0.0662 4.0370 -1.0740 17 6 0.5475 5.2395 -1.9042 18 6 1.7032 4.3475 -2.3759 19 6 3.0410 5.0793 -2.4626 20 6 3.0405 5.9873 -3.6959 21 6 2.7833 5.1459 -4.9472 22 6 1.4082 4.4830 -4.8480 23 6 1.3799 3.5474 -3.6359 24 1 -0.3633 0.5375 0.8760 25 1 -0.3633 0.4899 -0.9034 26 1 -0.3634 -1.0272 0.0275 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8086 -0.0547 2.9656 30 1 0.8118 1.6973 -1.6323 31 1 -0.6165 3.3799 -1.6127 32 1 -0.2999 4.3073 -0.0836 33 1 0.8688 6.0875 -1.2995 34 1 -0.1394 5.5228 -2.7017 35 1 3.8488 4.3523 -2.5461 36 1 3.1845 5.6828 -1.5663 37 1 4.0077 6.4822 -3.7832 38 1 2.2561 6.7373 -3.5947 39 1 2.8140 5.7872 -5.8280 40 1 3.5512 4.3770 -5.0314 41 1 0.6423 5.2501 -4.7338 42 1 1.2153 3.9087 -5.7542 43 1 2.1209 2.7588 -3.7666 44 1 0.3885 3.1041 -3.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694467946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:30 Heat of formation + Delta-G solvation = -12.022041 kcal Electronic energy + Delta-G solvation = -19923.982259 eV Core-core repulsion = 17261.272551 eV Total energy + Delta-G solvation = -2662.709708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.10123 -36.19633 -34.72157 -31.87679 -30.58102 -30.11111 -28.20400 -26.49741 -23.69387 -22.81157 -22.37005 -22.04763 -19.92873 -19.46250 -17.54629 -16.16830 -15.51412 -15.16464 -14.55807 -14.32528 -13.75127 -13.62655 -13.40253 -12.99576 -12.84100 -12.54387 -12.12550 -11.94822 -11.74671 -11.65688 -11.27525 -11.19296 -10.97546 -10.83647 -10.69199 -10.59387 -10.54589 -10.36258 -10.03081 -9.89477 -9.73117 -9.61962 -9.41405 -9.04600 -8.95270 -8.30083 -7.05831 -5.91924 -3.95456 3.33478 3.41566 3.46961 4.48744 4.86529 4.96550 4.99274 5.19434 5.25461 5.33536 5.38151 5.51565 5.61728 5.70164 5.80374 5.86856 5.88721 5.97713 6.04676 6.09991 6.17420 6.19504 6.24029 6.25040 6.29483 6.34271 6.39326 6.44350 6.56937 6.60034 6.66329 6.76859 6.86946 6.95063 7.03357 7.13577 7.24879 7.58758 7.83516 7.99610 8.41737 8.47526 8.85293 9.14018 9.69604 11.13284 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.007158 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.120422 B = 3910.658800 C = 4691.471707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.094 3.906 15 H 0.094 0.906 16 C -0.174 4.174 17 C -0.132 4.132 18 C -0.066 4.066 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.082 4.082 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.318 0.682 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 8.194 -9.904 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.301 5.301 14 C -0.018 4.018 15 H 0.112 0.888 16 C -0.213 4.213 17 C -0.170 4.170 18 C -0.067 4.067 19 C -0.138 4.138 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.119 4.119 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.501 8.108 -9.952 13.603 hybrid contribution 0.099 0.017 0.768 0.774 sum -4.402 8.125 -9.184 13.028 Atomic orbital electron populations 1.21872 0.99693 0.99461 0.99592 1.21784 0.91148 1.00650 1.02964 1.19160 0.95265 0.89787 0.84674 0.98106 1.21282 0.91384 1.35825 1.04078 0.92028 1.24962 0.97913 0.95839 0.95959 1.69888 1.34482 1.39792 1.09673 0.86539 0.86123 0.77532 0.77801 1.19793 1.21336 1.21234 1.60557 1.36867 1.01167 1.31502 1.22886 0.92939 0.89801 0.96205 0.88777 1.23692 0.99453 0.98608 0.99582 1.22810 0.98385 0.96567 0.99210 1.21717 0.93796 0.95371 0.95773 1.21412 0.97619 0.97971 0.96752 1.21512 1.00568 0.97932 0.95292 1.21481 0.97703 0.99045 0.97194 1.21561 0.96922 0.98823 0.98253 1.21080 1.01477 0.97309 0.92083 0.93926 0.94697 0.94535 0.94188 0.88346 0.93262 0.86340 0.90861 0.92422 0.90850 0.92213 0.91390 0.92480 0.92821 0.92586 0.93047 0.92020 0.92687 0.92757 0.90534 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.73 37.16 0.36 -2.53 16 2 C -0.13 -2.98 5.34 -26.73 -0.14 -3.13 16 3 C 0.22 5.36 1.88 -68.87 -0.13 5.23 16 4 H 0.00 0.03 7.79 -51.93 -0.40 -0.37 16 5 C -0.49 -13.34 8.76 -34.44 -0.30 -13.64 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.65 11.29 55.43 0.63 -25.02 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.67 -13.81 5.51 -100.28 -0.55 -14.36 16 14 C 0.09 1.71 3.37 -67.07 -0.23 1.49 16 15 H 0.09 1.98 7.81 -51.92 -0.41 1.57 16 16 C -0.17 -2.71 7.35 -25.85 -0.19 -2.90 16 17 C -0.13 -1.83 6.82 -26.07 -0.18 -2.00 16 18 C -0.07 -1.00 0.74 -154.37 -0.11 -1.11 16 19 C -0.10 -1.51 5.09 -26.80 -0.14 -1.64 16 20 C -0.12 -1.44 5.85 -26.67 -0.16 -1.60 16 21 C -0.12 -1.40 5.87 -26.76 -0.16 -1.56 16 22 C -0.12 -1.44 5.84 -26.67 -0.16 -1.59 16 23 C -0.08 -1.18 4.22 -26.80 -0.11 -1.30 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.61 6.51 -51.93 -0.34 0.27 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.08 5.87 -39.29 -0.23 5.85 16 31 H 0.07 1.10 7.30 -51.93 -0.38 0.72 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.98 8.06 -51.93 -0.42 0.57 16 34 H 0.06 0.76 7.36 -51.93 -0.38 0.38 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.66 7.97 -51.93 -0.41 0.25 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 44 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -27.26 328.62 -9.96 -37.22 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.23 Total: 5.50 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.73 Total: -24.90 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.07 Total: -39.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.26 -9.96 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694467946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.198 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds