Wall clock time and date at job start Mon Mar 30 2020 07:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47694 * 2 1 4 4 H 1.09005 * 109.46745 * 54.57047 * 3 2 1 5 5 C 1.50696 * 109.47480 * 174.57355 * 3 2 1 6 6 H 1.08001 * 120.00018 * 119.99901 * 5 3 2 7 7 C 1.37877 * 120.00003 * 300.00153 * 5 3 2 8 8 N 1.31519 * 119.99904 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99946 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46941 * 119.99955 * 9 7 5 12 12 H 1.48502 * 109.46871 * 239.99843 * 9 7 5 13 13 N 1.46901 * 109.46853 * 294.57600 * 3 2 1 14 14 C 1.46899 * 110.99805 * 152.59323 * 13 3 2 15 15 H 1.09008 * 112.86532 * 25.04363 * 14 13 3 16 16 C 1.53847 * 113.71141 * 253.72093 * 14 13 3 17 17 C 1.53847 * 87.14371 * 220.30490 * 16 14 13 18 18 C 1.53390 * 113.63057 * 156.29015 * 14 13 3 19 19 C 1.52731 * 113.55827 * 254.42428 * 18 14 13 20 20 C 1.53142 * 109.23921 * 187.45256 * 19 18 14 21 21 C 1.52969 * 109.43047 * 302.16501 * 20 19 18 22 22 C 1.52975 * 109.66070 * 61.71686 * 21 20 19 23 23 C 1.52720 * 113.55082 * 25.24843 * 18 14 13 24 24 H 1.09004 * 109.46709 * 301.53486 * 1 2 3 25 25 H 1.09002 * 109.46897 * 61.52730 * 1 2 3 26 26 H 1.08995 * 109.47681 * 181.53357 * 1 2 3 27 27 H 1.09001 * 109.46931 * 239.99900 * 2 1 3 28 28 H 1.08999 * 109.47278 * 120.00111 * 2 1 3 29 29 H 0.97000 * 119.99803 * 179.97438 * 8 7 5 30 30 H 1.00897 * 110.99999 * 28.64387 * 13 3 2 31 31 H 1.08998 * 113.60829 * 334.87160 * 16 14 13 32 32 H 1.09000 * 113.60501 * 105.66216 * 16 14 13 33 33 H 1.08993 * 113.63532 * 270.63576 * 17 16 14 34 34 H 1.09003 * 113.62730 * 139.67141 * 17 16 14 35 35 H 1.09001 * 109.50474 * 67.52184 * 19 18 14 36 36 H 1.09001 * 109.50568 * 307.38055 * 19 18 14 37 37 H 1.08997 * 109.47526 * 182.18118 * 20 19 18 38 38 H 1.08996 * 109.47808 * 62.15194 * 20 19 18 39 39 H 1.09001 * 109.43116 * 181.76026 * 21 20 19 40 40 H 1.08994 * 109.43681 * 301.67312 * 21 20 19 41 41 H 1.09001 * 109.47495 * 58.27578 * 22 21 20 42 42 H 1.09002 * 109.47714 * 178.29653 * 22 21 20 43 43 H 1.08996 * 109.51466 * 292.47944 * 23 18 14 44 44 H 1.09003 * 109.50952 * 52.61873 * 23 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5996 1.9836 0.8374 5 6 3.5411 1.4445 0.1344 6 1 4.1518 1.8871 -0.6386 7 6 4.1347 0.8813 1.2441 8 7 3.3909 0.3418 2.1851 9 14 5.9953 0.8832 1.4103 10 1 6.5974 1.5444 0.2247 11 1 6.3817 1.6219 2.6392 12 1 6.4857 -0.5156 1.4987 13 7 1.6603 2.0961 -1.2595 14 6 1.5248 3.5477 -1.0793 15 1 2.1163 3.9281 -0.2464 16 6 0.0662 4.0370 -1.0740 17 6 0.5475 5.2395 -1.9042 18 6 1.7032 4.3475 -2.3759 19 6 3.0410 5.0793 -2.4626 20 6 3.0405 5.9873 -3.6959 21 6 2.7833 5.1459 -4.9472 22 6 1.4082 4.4830 -4.8480 23 6 1.3799 3.5474 -3.6359 24 1 -0.3633 0.5375 0.8760 25 1 -0.3633 0.4899 -0.9034 26 1 -0.3634 -1.0272 0.0275 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8086 -0.0547 2.9656 30 1 0.8118 1.6973 -1.6323 31 1 -0.6165 3.3799 -1.6127 32 1 -0.2999 4.3073 -0.0836 33 1 0.8688 6.0875 -1.2995 34 1 -0.1394 5.5228 -2.7017 35 1 3.8488 4.3523 -2.5461 36 1 3.1845 5.6828 -1.5663 37 1 4.0077 6.4822 -3.7832 38 1 2.2561 6.7373 -3.5947 39 1 2.8140 5.7872 -5.8280 40 1 3.5512 4.3770 -5.0314 41 1 0.6423 5.2501 -4.7338 42 1 1.2153 3.9087 -5.7542 43 1 2.1209 2.7588 -3.7666 44 1 0.3885 3.1041 -3.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694467946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:29 Heat of formation + Delta-G solvation = -25.800972 kcal Electronic energy + Delta-G solvation = -19924.579758 eV Core-core repulsion = 17261.272551 eV Total energy + Delta-G solvation = -2663.307207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38047 -37.77615 -36.15174 -33.92575 -31.82640 -31.61550 -29.35270 -28.46748 -25.35583 -24.09433 -23.87583 -23.21414 -21.40205 -21.05253 -18.79900 -18.30109 -16.87976 -16.79040 -16.23386 -15.51501 -15.37522 -14.98724 -14.65882 -14.52652 -14.35333 -13.93412 -13.64991 -13.22329 -13.16625 -13.08250 -12.86950 -12.80614 -12.61237 -12.47887 -12.23294 -11.94423 -11.87680 -11.76693 -11.55879 -11.52526 -11.40820 -11.07118 -10.80445 -10.58970 -10.50788 -10.37154 -8.78166 -8.05432 -6.17243 1.37135 1.39360 1.51211 2.43138 3.18650 3.63371 3.70350 3.81090 3.93880 4.10571 4.20500 4.33851 4.45964 4.51110 4.56291 4.56632 4.57670 4.70477 4.76016 4.77786 4.88158 4.90437 4.93169 4.97570 5.08420 5.12688 5.21647 5.25257 5.28016 5.34330 5.35696 5.41045 5.45340 5.48653 5.59108 5.62469 5.73677 5.77093 5.83785 5.94957 6.41007 6.62433 6.99187 7.10534 7.52313 8.97070 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.007158 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.120422 B = 3910.658800 C = 4691.471707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.035 1.035 5 C -0.503 4.503 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.669 5.669 14 C 0.073 3.927 15 H 0.056 0.944 16 C -0.166 4.166 17 C -0.114 4.114 18 C -0.059 4.059 19 C -0.102 4.102 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.079 4.079 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 9.380 -11.796 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.018 1.018 5 C -0.542 4.542 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.300 5.300 14 C -0.038 4.038 15 H 0.074 0.926 16 C -0.205 4.205 17 C -0.152 4.152 18 C -0.060 4.060 19 C -0.140 4.140 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.117 4.117 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.553 9.304 -11.857 16.062 hybrid contribution 0.446 -0.354 1.385 1.498 sum -5.108 8.950 -10.471 14.692 Atomic orbital electron populations 1.21728 0.96269 1.01061 1.00361 1.21607 0.94232 0.99243 1.01031 1.18882 0.93636 0.90411 0.85132 1.01789 1.21511 0.93048 1.35797 1.03876 0.93615 1.25659 1.02015 0.95575 0.95710 1.70012 1.35998 1.40217 1.09982 0.85611 0.81246 0.77699 0.77707 1.19705 1.20796 1.20530 1.60481 1.37644 1.02486 1.29344 1.22980 0.95073 0.88558 0.97211 0.92585 1.23625 0.97288 0.99493 1.00074 1.22732 0.97460 0.95699 0.99307 1.21693 0.94682 0.95085 0.94543 1.21402 0.96562 0.97780 0.98211 1.21474 1.01662 0.97591 0.93912 1.21497 0.97267 0.98962 0.97732 1.21531 0.97369 0.98717 0.97332 1.21040 1.00781 0.97110 0.92757 0.94642 0.92437 0.92431 0.94634 0.91611 0.93190 0.85310 0.89580 0.92854 0.90330 0.89602 0.94475 0.93174 0.92081 0.91012 0.90723 0.93473 0.91103 0.91466 0.93212 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.73 71.98 0.70 -4.50 16 2 C -0.12 -5.89 5.34 30.59 0.16 -5.72 16 3 C 0.23 11.64 1.88 44.17 0.08 11.72 16 4 H -0.04 -2.04 7.79 -2.38 -0.02 -2.06 16 5 C -0.50 -28.78 8.76 25.60 0.22 -28.56 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.46 5.29 84.65 0.45 0.90 16 8 N -0.92 -54.22 11.29 21.45 0.24 -53.98 16 9 Si 0.95 45.46 29.54 68.60 2.03 47.48 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.67 -28.21 5.51 -471.16 -2.60 -30.80 16 14 C 0.07 2.74 3.37 45.33 0.15 2.89 16 15 H 0.06 2.51 7.81 -2.38 -0.02 2.49 16 16 C -0.17 -4.95 7.35 31.17 0.23 -4.72 16 17 C -0.11 -2.88 6.82 31.02 0.21 -2.67 16 18 C -0.06 -1.75 0.74 -52.09 -0.04 -1.79 16 19 C -0.10 -3.07 5.09 30.55 0.16 -2.91 16 20 C -0.11 -2.48 5.85 30.63 0.18 -2.30 16 21 C -0.12 -2.50 5.87 30.58 0.18 -2.32 16 22 C -0.11 -2.37 5.84 30.63 0.18 -2.19 16 23 C -0.08 -2.16 4.22 30.55 0.13 -2.03 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.91 6.51 -2.39 -0.02 1.89 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.33 12.41 5.87 -89.70 -0.53 11.89 16 31 H 0.09 2.37 7.30 -2.39 -0.02 2.35 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.93 8.06 -2.39 -0.02 1.91 16 34 H 0.09 1.79 7.36 -2.39 -0.02 1.77 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.53 8.09 -2.39 -0.02 1.52 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.44 7.97 -2.39 -0.02 1.42 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.31 7.38 -2.39 -0.02 1.30 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.62 8.03 -2.39 -0.02 1.60 16 44 H 0.06 1.55 7.31 -2.39 -0.02 1.53 16 Total: -1.00 -61.14 328.62 3.08 -58.06 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.41 Total: 23.46 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 3.00 Total: -44.21 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.35 Total: -84.79 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -61.14 3.08 -58.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694467946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.256 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds