Wall clock time and date at job start Mon Mar 30 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47568 * 2 1 4 4 H 1.09004 * 109.46953 * 55.10570 * 3 2 1 5 5 C 1.50702 * 109.47609 * 175.10757 * 3 2 1 6 6 H 1.07995 * 119.99562 * 119.99917 * 5 3 2 7 7 C 1.37871 * 120.00040 * 300.00166 * 5 3 2 8 8 N 1.31521 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47082 * 90.00169 * 9 7 5 11 11 H 1.48503 * 109.47183 * 210.00012 * 9 7 5 12 12 H 1.48498 * 109.47098 * 329.99887 * 9 7 5 13 13 N 1.46902 * 109.47099 * 295.11112 * 3 2 1 14 14 C 1.46901 * 110.99991 * 154.62847 * 13 3 2 15 15 C 1.53003 * 109.46733 * 185.15324 * 14 13 3 16 16 H 1.08994 * 109.47766 * 54.99275 * 15 14 13 17 17 C 1.52949 * 109.47268 * 294.97368 * 15 14 13 18 18 C 1.52945 * 109.81758 * 177.02051 * 17 15 14 19 19 C 1.53182 * 109.45110 * 62.98976 * 18 17 15 20 20 C 1.53151 * 108.88087 * 303.42871 * 19 18 17 21 21 C 1.52803 * 117.75025 * 199.63115 * 20 19 18 22 22 C 1.52844 * 117.67233 * 268.51702 * 20 19 18 23 23 C 1.53152 * 115.00725 * 53.94059 * 20 19 18 24 24 H 1.09008 * 109.47127 * 62.99884 * 1 2 3 25 25 H 1.08999 * 109.47388 * 182.99775 * 1 2 3 26 26 H 1.08996 * 109.47139 * 303.00183 * 1 2 3 27 27 H 1.09000 * 109.47160 * 239.99731 * 2 1 3 28 28 H 1.09005 * 109.47243 * 119.99924 * 2 1 3 29 29 H 0.96998 * 120.00091 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99624 * 278.58054 * 13 3 2 31 31 H 1.08995 * 109.46908 * 305.14679 * 14 13 3 32 32 H 1.08997 * 109.47074 * 65.15062 * 14 13 3 33 33 H 1.09004 * 109.41650 * 297.12629 * 17 15 14 34 34 H 1.08998 * 109.41282 * 56.91717 * 17 15 14 35 35 H 1.09002 * 109.47706 * 302.99487 * 18 17 15 36 36 H 1.08998 * 109.47760 * 182.98639 * 18 17 15 37 37 H 1.09000 * 109.57443 * 183.60608 * 19 18 17 38 38 H 1.09003 * 109.56413 * 63.24572 * 19 18 17 39 39 H 1.08997 * 117.50058 * 215.10186 * 21 20 19 40 40 H 1.08998 * 117.50237 * 0.14647 * 21 20 19 41 41 H 1.09002 * 117.50635 * 359.71841 * 22 20 19 42 42 H 1.09000 * 117.49943 * 144.77486 * 22 20 19 43 43 H 1.09000 * 109.56894 * 186.23669 * 23 20 19 44 44 H 1.09008 * 109.66521 * 65.93183 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 0.8429 5 6 3.5422 1.4442 0.1212 6 1 4.1460 1.8892 -0.6558 7 6 4.1455 0.8776 1.2238 8 7 3.4101 0.3352 2.1697 9 14 6.0075 0.8791 1.3737 10 1 6.4465 2.1115 2.0763 11 1 6.4429 -0.3125 2.1456 12 1 6.6132 0.8394 0.0185 13 7 1.6492 2.1001 -1.2541 14 6 1.5622 3.5562 -1.0801 15 6 1.0304 4.1925 -2.3659 16 1 0.0811 3.7294 -2.6349 17 6 2.0398 3.9800 -3.4953 18 6 1.4833 4.5480 -4.8018 19 6 1.2890 6.0607 -4.6585 20 6 0.3719 6.3314 -3.4621 21 6 -0.3265 7.6888 -3.3939 22 6 -1.1302 6.4297 -3.7271 23 6 0.8216 5.6937 -2.1443 24 1 -0.3634 0.4666 -0.9157 25 1 -0.3634 -1.0262 0.0537 26 1 -0.3633 0.5597 0.8618 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8345 -0.0631 2.9456 30 1 2.2853 1.8624 -2.0005 31 1 0.8866 3.7838 -0.2557 32 1 2.5522 3.9555 -0.8595 33 1 2.9724 4.4871 -3.2479 34 1 2.2295 2.9134 -3.6157 35 1 0.5252 4.0779 -5.0235 36 1 2.1831 4.3468 -5.6128 37 1 0.8329 6.4578 -5.5653 38 1 2.2546 6.5388 -4.4938 39 1 -0.4706 8.1317 -2.4084 40 1 -0.1368 8.3937 -4.2033 41 1 -1.4690 6.3064 -4.7558 42 1 -1.8027 6.0443 -2.9608 43 1 0.0556 5.8475 -1.3842 44 1 1.7569 6.1481 -1.8173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695744324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:46 Heat of formation + Delta-G solvation = -13.551940 kcal Electronic energy + Delta-G solvation = -19184.368739 eV Core-core repulsion = 16521.592689 eV Total energy + Delta-G solvation = -2662.776049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42754 -36.49064 -34.72812 -32.53581 -31.45483 -30.02847 -27.36990 -26.41260 -24.16951 -22.54878 -22.39528 -21.87177 -19.72726 -19.38485 -18.52007 -16.64469 -15.42253 -15.18000 -14.77846 -14.47985 -14.06198 -13.61463 -13.43302 -13.08914 -12.85731 -12.49816 -12.39663 -12.06540 -11.62712 -11.53103 -11.32976 -11.15208 -11.08510 -10.92898 -10.86659 -10.76903 -10.60015 -10.35133 -10.11180 -9.93508 -9.76501 -9.55532 -9.48588 -9.23343 -9.00756 -8.35058 -7.17231 -5.96828 -4.09888 3.27570 3.34898 3.37663 3.77124 4.41091 4.61279 4.76302 4.86896 4.98532 5.25491 5.26427 5.30259 5.35730 5.51873 5.60882 5.63454 5.73421 5.84107 5.86864 5.94409 5.97763 6.10911 6.15444 6.18295 6.24653 6.33576 6.43225 6.50471 6.53266 6.55048 6.57165 6.72288 6.76210 6.91646 7.18765 7.21435 7.49067 7.63946 7.80889 8.13591 8.20510 8.38993 8.73023 9.04031 9.57650 11.02959 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.005059 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.770582 B = 5533.860806 C = 6012.864703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.689 5.689 14 C 0.072 3.928 15 C -0.078 4.078 16 H 0.073 0.927 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.182 4.182 22 C -0.175 4.175 23 C -0.076 4.076 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 10.219 -10.992 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.048 0.952 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.058 4.058 15 C -0.097 4.097 16 H 0.091 0.909 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.219 4.219 22 C -0.212 4.212 23 C -0.114 4.114 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.608 10.007 -10.697 16.069 hybrid contribution 2.017 0.271 0.293 2.056 sum -4.591 10.278 -10.404 15.328 Atomic orbital electron populations 1.21688 0.99048 0.98211 1.00376 1.21491 0.92062 0.99333 1.01558 1.19138 0.92686 0.91177 0.86374 0.95187 1.21875 0.92847 1.37971 1.05531 0.92956 1.24931 0.97835 0.95033 0.95739 1.69883 1.34767 1.38316 1.09431 0.86675 0.86209 0.77506 0.78069 1.20803 1.21166 1.20024 1.60912 1.55235 1.06004 1.09707 1.21771 0.98620 0.90102 0.95341 1.21148 0.99299 0.93759 0.95515 0.90867 1.21531 0.98335 1.01101 0.94123 1.21499 1.00966 0.94915 0.97782 1.21137 0.98569 0.96748 0.95268 1.21493 0.93554 0.98891 0.97463 1.22979 1.05332 0.91035 1.02552 1.22990 0.94194 1.01859 1.02134 1.21173 1.00956 0.95494 0.93731 0.93400 0.95748 0.94539 0.95194 0.89258 0.92937 0.85730 0.92457 0.95682 0.92532 0.91435 0.92047 0.92457 0.92473 0.91788 0.89054 0.89281 0.89256 0.88920 0.92084 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.76 37.16 0.36 -2.49 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.21 5.33 1.97 -68.86 -0.14 5.19 16 4 H 0.03 0.83 7.71 -51.93 -0.40 0.43 16 5 C -0.54 -14.69 8.45 -34.44 -0.29 -14.98 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.17 11.29 55.43 0.63 -24.54 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.69 -14.40 5.70 -107.95 -0.61 -15.01 16 14 C 0.07 1.34 4.96 -3.82 -0.02 1.32 16 15 C -0.08 -1.16 2.40 -90.55 -0.22 -1.38 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -1.58 4.94 -26.79 -0.13 -1.71 16 18 C -0.11 -1.33 5.93 -26.67 -0.16 -1.49 16 19 C -0.08 -0.87 5.67 -26.56 -0.15 -1.02 16 20 C -0.11 -1.30 1.97 -154.53 -0.31 -1.61 16 21 C -0.18 -1.84 9.99 -26.81 -0.27 -2.11 16 22 C -0.17 -1.84 9.93 -26.79 -0.27 -2.11 16 23 C -0.08 -0.99 4.96 -26.56 -0.13 -1.12 16 24 H 0.05 0.96 7.83 -51.92 -0.41 0.55 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.75 6.79 -39.29 -0.27 6.48 16 31 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.02 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.01 6.66 -51.93 -0.35 0.66 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -27.12 338.58 -10.30 -37.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.44 Total: 5.30 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.95 Total: -24.47 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.01 Total: -39.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.12 -10.30 -37.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695744324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.869 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds