Wall clock time and date at job start Mon Mar 30 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47568 * 2 1 4 4 H 1.09004 * 109.46953 * 55.10570 * 3 2 1 5 5 C 1.50702 * 109.47609 * 175.10757 * 3 2 1 6 6 H 1.07995 * 119.99562 * 119.99917 * 5 3 2 7 7 C 1.37871 * 120.00040 * 300.00166 * 5 3 2 8 8 N 1.31521 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47082 * 90.00169 * 9 7 5 11 11 H 1.48503 * 109.47183 * 210.00012 * 9 7 5 12 12 H 1.48498 * 109.47098 * 329.99887 * 9 7 5 13 13 N 1.46902 * 109.47099 * 295.11112 * 3 2 1 14 14 C 1.46901 * 110.99991 * 154.62847 * 13 3 2 15 15 C 1.53003 * 109.46733 * 185.15324 * 14 13 3 16 16 H 1.08994 * 109.47766 * 54.99275 * 15 14 13 17 17 C 1.52949 * 109.47268 * 294.97368 * 15 14 13 18 18 C 1.52945 * 109.81758 * 177.02051 * 17 15 14 19 19 C 1.53182 * 109.45110 * 62.98976 * 18 17 15 20 20 C 1.53151 * 108.88087 * 303.42871 * 19 18 17 21 21 C 1.52803 * 117.75025 * 199.63115 * 20 19 18 22 22 C 1.52844 * 117.67233 * 268.51702 * 20 19 18 23 23 C 1.53152 * 115.00725 * 53.94059 * 20 19 18 24 24 H 1.09008 * 109.47127 * 62.99884 * 1 2 3 25 25 H 1.08999 * 109.47388 * 182.99775 * 1 2 3 26 26 H 1.08996 * 109.47139 * 303.00183 * 1 2 3 27 27 H 1.09000 * 109.47160 * 239.99731 * 2 1 3 28 28 H 1.09005 * 109.47243 * 119.99924 * 2 1 3 29 29 H 0.96998 * 120.00091 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99624 * 278.58054 * 13 3 2 31 31 H 1.08995 * 109.46908 * 305.14679 * 14 13 3 32 32 H 1.08997 * 109.47074 * 65.15062 * 14 13 3 33 33 H 1.09004 * 109.41650 * 297.12629 * 17 15 14 34 34 H 1.08998 * 109.41282 * 56.91717 * 17 15 14 35 35 H 1.09002 * 109.47706 * 302.99487 * 18 17 15 36 36 H 1.08998 * 109.47760 * 182.98639 * 18 17 15 37 37 H 1.09000 * 109.57443 * 183.60608 * 19 18 17 38 38 H 1.09003 * 109.56413 * 63.24572 * 19 18 17 39 39 H 1.08997 * 117.50058 * 215.10186 * 21 20 19 40 40 H 1.08998 * 117.50237 * 0.14647 * 21 20 19 41 41 H 1.09002 * 117.50635 * 359.71841 * 22 20 19 42 42 H 1.09000 * 117.49943 * 144.77486 * 22 20 19 43 43 H 1.09000 * 109.56894 * 186.23669 * 23 20 19 44 44 H 1.09008 * 109.66521 * 65.93183 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 0.8429 5 6 3.5422 1.4442 0.1212 6 1 4.1460 1.8892 -0.6558 7 6 4.1455 0.8776 1.2238 8 7 3.4101 0.3352 2.1697 9 14 6.0075 0.8791 1.3737 10 1 6.4465 2.1115 2.0763 11 1 6.4429 -0.3125 2.1456 12 1 6.6132 0.8394 0.0185 13 7 1.6492 2.1001 -1.2541 14 6 1.5622 3.5562 -1.0801 15 6 1.0304 4.1925 -2.3659 16 1 0.0811 3.7294 -2.6349 17 6 2.0398 3.9800 -3.4953 18 6 1.4833 4.5480 -4.8018 19 6 1.2890 6.0607 -4.6585 20 6 0.3719 6.3314 -3.4621 21 6 -0.3265 7.6888 -3.3939 22 6 -1.1302 6.4297 -3.7271 23 6 0.8216 5.6937 -2.1443 24 1 -0.3634 0.4666 -0.9157 25 1 -0.3634 -1.0262 0.0537 26 1 -0.3633 0.5597 0.8618 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8345 -0.0631 2.9456 30 1 2.2853 1.8624 -2.0005 31 1 0.8866 3.7838 -0.2557 32 1 2.5522 3.9555 -0.8595 33 1 2.9724 4.4871 -3.2479 34 1 2.2295 2.9134 -3.6157 35 1 0.5252 4.0779 -5.0235 36 1 2.1831 4.3468 -5.6128 37 1 0.8329 6.4578 -5.5653 38 1 2.2546 6.5388 -4.4938 39 1 -0.4706 8.1317 -2.4084 40 1 -0.1368 8.3937 -4.2033 41 1 -1.4690 6.3064 -4.7558 42 1 -1.8027 6.0443 -2.9608 43 1 0.0556 5.8475 -1.3842 44 1 1.7569 6.1481 -1.8173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695744324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:46 Heat of formation + Delta-G solvation = -26.500867 kcal Electronic energy + Delta-G solvation = -19184.930246 eV Core-core repulsion = 16521.592689 eV Total energy + Delta-G solvation = -2663.337557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43920 -38.12991 -36.08843 -34.17591 -33.15023 -31.49685 -28.65058 -28.02125 -25.80666 -24.21473 -23.35041 -22.90547 -21.35739 -20.94714 -19.50175 -18.70790 -16.83391 -16.42999 -16.21115 -15.81407 -15.58793 -14.96475 -14.76705 -14.63906 -14.27762 -13.93513 -13.56349 -13.41663 -13.22691 -13.13501 -12.91862 -12.62411 -12.52603 -12.39757 -12.24961 -12.08359 -11.86498 -11.79514 -11.60079 -11.48217 -11.44287 -11.03138 -10.80306 -10.71516 -10.46758 -10.30533 -9.02193 -8.05336 -6.28212 1.36887 1.38562 1.47896 2.39394 2.92317 3.13684 3.60355 3.81145 3.83171 4.04102 4.08983 4.20870 4.30224 4.45234 4.51715 4.59520 4.64591 4.69349 4.76493 4.80286 4.84557 4.92852 4.95509 5.00717 5.06263 5.09871 5.12724 5.16633 5.18583 5.33292 5.38317 5.39726 5.41811 5.46408 5.52068 5.53609 5.61510 5.68433 5.78209 6.11458 6.21282 6.40423 6.84157 7.03286 7.43416 8.90846 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.005059 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.770582 B = 5533.860806 C = 6012.864703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.220 3.780 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.270 1.270 13 N -0.678 5.678 14 C 0.076 3.924 15 C -0.065 4.065 16 H 0.070 0.930 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.172 4.172 22 C -0.173 4.173 23 C -0.072 4.072 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.044 0.956 32 H 0.006 0.994 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 11.121 -12.717 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.308 5.308 14 C -0.054 4.054 15 C -0.084 4.084 16 H 0.088 0.912 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.209 4.209 22 C -0.210 4.210 23 C -0.110 4.110 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.765 10.918 -12.436 17.878 hybrid contribution 2.045 0.001 0.863 2.219 sum -4.721 10.919 -11.573 16.597 Atomic orbital electron populations 1.21547 0.96432 0.99609 1.00520 1.21353 0.94390 0.98342 0.99995 1.18934 0.91576 0.91570 0.86792 0.98697 1.22159 0.94074 1.37938 1.05609 0.93360 1.25669 1.02138 0.94739 0.95476 1.70012 1.36424 1.38801 1.09807 0.85686 0.81026 0.77534 0.78158 1.20480 1.20686 1.19442 1.60859 1.54693 1.07215 1.08018 1.21798 0.97466 0.88862 0.97314 1.20995 0.99024 0.94724 0.93643 0.91206 1.21499 0.97838 1.00450 0.95155 1.21453 1.01133 0.95537 0.96468 1.21129 0.98596 0.95951 0.95702 1.21436 0.94450 1.00285 0.96568 1.23046 1.03952 0.90709 1.03185 1.23048 0.93277 1.01938 1.02742 1.21095 1.00688 0.94093 0.95148 0.92386 0.93615 0.95256 0.95284 0.92139 0.92889 0.85383 0.93697 0.97615 0.93214 0.92664 0.91913 0.91177 0.90627 0.91843 0.89019 0.87759 0.88022 0.89404 0.92315 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.76 71.98 0.70 -4.42 16 2 C -0.10 -5.01 5.45 30.59 0.17 -4.85 16 3 C 0.22 11.25 1.97 44.17 0.09 11.34 16 4 H 0.00 -0.29 7.71 -2.39 -0.02 -0.30 16 5 C -0.56 -30.81 8.45 25.60 0.22 -30.59 16 6 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 7 C 0.02 1.10 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.68 -28.82 5.70 -495.44 -2.82 -31.64 16 14 C 0.08 2.89 4.96 86.30 0.43 3.32 16 15 C -0.06 -1.92 2.40 -10.75 -0.03 -1.94 16 16 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 17 C -0.11 -3.03 4.94 30.56 0.15 -2.88 16 18 C -0.11 -2.30 5.93 30.64 0.18 -2.12 16 19 C -0.08 -1.46 5.67 30.71 0.17 -1.29 16 20 C -0.13 -2.65 1.97 -52.20 -0.10 -2.76 16 21 C -0.17 -3.04 9.99 30.54 0.31 -2.74 16 22 C -0.17 -3.23 9.93 30.56 0.30 -2.93 16 23 C -0.07 -1.85 4.96 30.71 0.15 -1.70 16 24 H 0.06 2.26 7.83 -2.38 -0.02 2.24 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 3.34 5.95 -2.38 -0.01 3.32 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.33 13.76 6.79 -89.69 -0.61 13.15 16 31 H 0.04 1.80 7.93 -2.39 -0.02 1.79 16 32 H 0.01 0.23 8.10 -2.39 -0.02 0.21 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.62 6.66 -2.39 -0.02 1.60 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 44 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -58.17 338.58 2.96 -55.21 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.32 Total: 25.13 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.19 Total: -42.01 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.58 Total: -84.19 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.17 2.96 -55.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695744324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.709 kcal (2) G-P(sol) polarization free energy of solvation -58.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds