Wall clock time and date at job start Mon Mar 30 2020 07:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 H 1.08994 * 109.47324 * 174.08742 * 3 2 1 5 5 C 1.50702 * 109.47263 * 54.08148 * 3 2 1 6 6 H 1.07994 * 120.00301 * 240.00063 * 5 3 2 7 7 C 1.37881 * 119.99363 * 60.00030 * 5 3 2 8 8 N 1.31507 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99464 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47116 * 90.00446 * 9 7 5 11 11 H 1.48503 * 109.46967 * 210.00213 * 9 7 5 12 12 H 1.48494 * 109.47624 * 330.00232 * 9 7 5 13 13 N 1.46906 * 109.47108 * 294.08675 * 3 2 1 14 14 C 1.46900 * 110.99626 * 275.76569 * 13 3 2 15 15 C 1.52998 * 109.46985 * 176.27781 * 14 13 3 16 16 H 1.08996 * 109.48259 * 305.01049 * 15 14 13 17 17 C 1.52947 * 109.47970 * 65.02544 * 15 14 13 18 18 C 1.52934 * 109.82778 * 182.98219 * 17 15 14 19 19 C 1.53180 * 109.45163 * 297.01871 * 18 17 15 20 20 C 1.53148 * 108.88735 * 56.56061 * 19 18 17 21 21 C 1.52843 * 117.67926 * 91.49276 * 20 19 18 22 22 C 1.52807 * 117.75513 * 160.37663 * 20 19 18 23 23 C 1.53150 * 115.00449 * 306.06538 * 20 19 18 24 24 H 1.09001 * 109.46858 * 178.55959 * 1 2 3 25 25 H 1.08995 * 109.47488 * 298.56262 * 1 2 3 26 26 H 1.09004 * 109.46891 * 58.56849 * 1 2 3 27 27 H 1.08998 * 109.47559 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47288 * 120.00014 * 2 1 3 29 29 H 0.97001 * 119.99968 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00127 * 39.71664 * 13 3 2 31 31 H 1.09003 * 109.47453 * 56.28063 * 14 13 3 32 32 H 1.08998 * 109.47640 * 296.27862 * 14 13 3 33 33 H 1.09005 * 109.40676 * 303.08736 * 17 15 14 34 34 H 1.09000 * 109.41551 * 62.94037 * 17 15 14 35 35 H 1.09007 * 109.47477 * 57.00978 * 18 17 15 36 36 H 1.08996 * 109.47691 * 177.02193 * 18 17 15 37 37 H 1.09000 * 109.56521 * 296.73829 * 19 18 17 38 38 H 1.09003 * 109.56821 * 176.38142 * 19 18 17 39 39 H 1.09004 * 117.50622 * 215.21883 * 21 20 19 40 40 H 1.08999 * 117.50613 * 0.28141 * 21 20 19 41 41 H 1.09009 * 117.49546 * 359.85045 * 22 20 19 42 42 H 1.08992 * 117.50570 * 144.86256 * 22 20 19 43 43 H 1.08997 * 109.57378 * 173.76382 * 23 20 19 44 44 H 1.09008 * 109.56888 * 294.00198 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4216 2.1940 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6307 1.7667 2.4448 8 7 2.3701 0.7038 2.6750 9 14 0.8648 2.6986 3.8711 10 1 -0.4776 2.1362 4.1661 11 1 1.7309 2.5672 5.0703 12 1 0.7322 4.1331 3.5111 13 7 1.6703 2.0926 -1.2644 14 6 2.6513 1.7941 -2.3163 15 6 2.1856 2.4093 -3.6375 16 1 1.1802 2.0570 -3.8681 17 6 2.1760 3.9338 -3.5149 18 6 1.6412 4.5547 -4.8061 19 6 2.5800 4.2082 -5.9658 20 6 2.7138 2.6853 -6.0573 21 6 1.7403 1.9407 -6.9705 22 6 3.2081 2.0924 -7.3760 23 6 3.1421 1.9940 -4.7596 24 1 -0.3633 -1.0274 -0.0258 25 1 -0.3634 0.4913 0.9025 26 1 -0.3633 0.5359 -0.8769 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5174 0.4035 3.5855 30 1 0.7406 1.8246 -1.5505 31 1 2.7437 0.7141 -2.4311 32 1 3.6186 2.2143 -2.0409 33 1 1.5378 4.2261 -2.6809 34 1 3.1908 4.2893 -3.3364 35 1 0.6462 4.1607 -5.0139 36 1 1.5870 5.6375 -4.6934 37 1 3.5599 4.6507 -5.7868 38 1 2.1675 4.5951 -6.8976 39 1 1.4057 0.9536 -6.6515 40 1 1.0044 2.5344 -7.5127 41 1 3.4377 2.7860 -8.1850 42 1 3.8394 1.2054 -7.3238 43 1 3.1024 0.9128 -4.8915 44 1 4.1587 2.2935 -4.5046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695744329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:49 Heat of formation + Delta-G solvation = -9.041188 kcal Electronic energy + Delta-G solvation = -19196.864029 eV Core-core repulsion = 16534.283581 eV Total energy + Delta-G solvation = -2662.580448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.45185 -36.71816 -34.83995 -32.61036 -31.29707 -29.69871 -27.32732 -26.37368 -24.11029 -23.08954 -22.55525 -21.80978 -20.03821 -19.29630 -18.45194 -16.08758 -15.41437 -15.14202 -14.74889 -14.50833 -14.22875 -13.76731 -13.57308 -13.08776 -12.68738 -12.58077 -12.43868 -12.03718 -11.75118 -11.68611 -11.45510 -11.37287 -10.91652 -10.89884 -10.78963 -10.68607 -10.50186 -10.32348 -10.07061 -9.92454 -9.76278 -9.68054 -9.51525 -9.34217 -8.89426 -8.30401 -7.10169 -5.93125 -3.94266 3.34758 3.41632 3.46153 3.73587 4.47557 4.58806 4.73237 4.84129 4.96581 5.27111 5.28277 5.32015 5.38689 5.48977 5.57137 5.59535 5.71150 5.82382 5.83409 5.92002 6.02050 6.07005 6.10816 6.15252 6.18928 6.26670 6.37082 6.39175 6.43811 6.48500 6.58516 6.62097 6.79736 6.84197 6.94847 7.33665 7.36192 7.55208 7.75212 7.94585 8.35101 8.63239 8.70841 9.11751 9.69333 11.14056 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035483 B = 0.004591 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.912021 B = 6096.896222 C = 6462.869131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.064 3.936 15 C -0.078 4.078 16 H 0.063 0.937 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.176 4.176 22 C -0.181 4.181 23 C -0.076 4.076 24 H 0.021 0.979 25 H 0.065 0.935 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.091 0.909 29 H 0.258 0.742 30 H 0.324 0.676 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 2.849 -16.647 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.066 4.066 15 C -0.097 4.097 16 H 0.081 0.919 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.213 4.213 22 C -0.218 4.218 23 C -0.114 4.114 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.392 3.359 -16.311 16.658 hybrid contribution -0.565 -0.685 0.575 1.058 sum -0.173 2.674 -15.735 15.962 Atomic orbital electron populations 1.21558 0.97733 0.97886 1.01229 1.22096 0.94977 1.01320 1.00060 1.19182 0.95944 0.88530 0.85640 0.95106 1.21078 1.30238 1.11410 0.89783 0.92095 1.24912 0.95616 0.95198 0.98686 1.69886 1.39340 1.24280 1.20209 0.86593 0.78952 0.80401 0.82027 1.20922 1.21485 1.19931 1.60847 1.03860 1.63017 1.03518 1.21935 0.97221 0.96470 0.91005 1.21126 0.98635 0.96138 0.93813 0.91864 1.21429 1.01542 0.94335 0.96939 1.21551 0.98834 0.99860 0.95213 1.21148 0.99952 0.92251 0.98402 1.21497 1.03474 0.94965 0.91455 1.22989 0.92582 1.01880 1.03836 1.22977 0.97327 1.03063 0.98480 1.21179 0.99321 0.98636 0.92218 0.96034 0.91569 0.95173 0.97178 0.89097 0.93210 0.85805 0.96652 0.92031 0.90192 0.92592 0.92287 0.92378 0.91737 0.92537 0.89037 0.89204 0.89221 0.89084 0.92310 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.39 37.16 0.35 -2.39 16 2 C -0.14 -3.43 5.50 -26.73 -0.15 -3.58 16 3 C 0.21 5.33 2.33 -68.86 -0.16 5.17 16 4 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 5 C -0.49 -13.18 7.35 -34.44 -0.25 -13.43 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.49 11.39 55.43 0.63 -24.86 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.25 5.65 -107.95 -0.61 -14.86 16 14 C 0.06 1.14 4.87 -3.82 -0.02 1.12 16 15 C -0.08 -1.13 2.30 -90.55 -0.21 -1.34 16 16 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 17 C -0.10 -1.49 5.03 -26.79 -0.13 -1.62 16 18 C -0.12 -1.38 5.93 -26.67 -0.16 -1.54 16 19 C -0.08 -0.86 5.67 -26.56 -0.15 -1.01 16 20 C -0.11 -1.27 1.97 -154.53 -0.31 -1.57 16 21 C -0.18 -1.82 9.93 -26.80 -0.27 -2.08 16 22 C -0.18 -1.79 9.99 -26.81 -0.27 -2.05 16 23 C -0.08 -0.95 4.96 -26.56 -0.13 -1.09 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.57 7.05 -51.93 -0.37 1.20 16 26 H 0.03 0.59 6.42 -51.93 -0.33 0.25 16 27 H 0.01 0.21 7.24 -51.93 -0.38 -0.16 16 28 H 0.09 2.42 6.25 -51.93 -0.32 2.09 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.32 6.54 6.55 -39.29 -0.26 6.29 16 31 H 0.02 0.28 7.23 -51.93 -0.38 -0.09 16 32 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 33 H 0.08 1.29 7.67 -51.93 -0.40 0.90 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -27.14 334.60 -10.20 -37.34 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.30 Total: 4.89 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -1.95 Total: -23.97 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.02 Total: -39.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.14 -10.20 -37.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695744329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.298 kcal (2) G-P(sol) polarization free energy of solvation -27.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds