Wall clock time and date at job start Mon Mar 30 2020 07:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 H 1.08994 * 109.47324 * 174.08742 * 3 2 1 5 5 C 1.50702 * 109.47263 * 54.08148 * 3 2 1 6 6 H 1.07994 * 120.00301 * 240.00063 * 5 3 2 7 7 C 1.37881 * 119.99363 * 60.00030 * 5 3 2 8 8 N 1.31507 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99464 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47116 * 90.00446 * 9 7 5 11 11 H 1.48503 * 109.46967 * 210.00213 * 9 7 5 12 12 H 1.48494 * 109.47624 * 330.00232 * 9 7 5 13 13 N 1.46906 * 109.47108 * 294.08675 * 3 2 1 14 14 C 1.46900 * 110.99626 * 275.76569 * 13 3 2 15 15 C 1.52998 * 109.46985 * 176.27781 * 14 13 3 16 16 H 1.08996 * 109.48259 * 305.01049 * 15 14 13 17 17 C 1.52947 * 109.47970 * 65.02544 * 15 14 13 18 18 C 1.52934 * 109.82778 * 182.98219 * 17 15 14 19 19 C 1.53180 * 109.45163 * 297.01871 * 18 17 15 20 20 C 1.53148 * 108.88735 * 56.56061 * 19 18 17 21 21 C 1.52843 * 117.67926 * 91.49276 * 20 19 18 22 22 C 1.52807 * 117.75513 * 160.37663 * 20 19 18 23 23 C 1.53150 * 115.00449 * 306.06538 * 20 19 18 24 24 H 1.09001 * 109.46858 * 178.55959 * 1 2 3 25 25 H 1.08995 * 109.47488 * 298.56262 * 1 2 3 26 26 H 1.09004 * 109.46891 * 58.56849 * 1 2 3 27 27 H 1.08998 * 109.47559 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47288 * 120.00014 * 2 1 3 29 29 H 0.97001 * 119.99968 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00127 * 39.71664 * 13 3 2 31 31 H 1.09003 * 109.47453 * 56.28063 * 14 13 3 32 32 H 1.08998 * 109.47640 * 296.27862 * 14 13 3 33 33 H 1.09005 * 109.40676 * 303.08736 * 17 15 14 34 34 H 1.09000 * 109.41551 * 62.94037 * 17 15 14 35 35 H 1.09007 * 109.47477 * 57.00978 * 18 17 15 36 36 H 1.08996 * 109.47691 * 177.02193 * 18 17 15 37 37 H 1.09000 * 109.56521 * 296.73829 * 19 18 17 38 38 H 1.09003 * 109.56821 * 176.38142 * 19 18 17 39 39 H 1.09004 * 117.50622 * 215.21883 * 21 20 19 40 40 H 1.08999 * 117.50613 * 0.28141 * 21 20 19 41 41 H 1.09009 * 117.49546 * 359.85045 * 22 20 19 42 42 H 1.08992 * 117.50570 * 144.86256 * 22 20 19 43 43 H 1.08997 * 109.57378 * 173.76382 * 23 20 19 44 44 H 1.09008 * 109.56888 * 294.00198 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4444 0.1059 5 6 1.4216 2.1940 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6307 1.7667 2.4448 8 7 2.3701 0.7038 2.6750 9 14 0.8648 2.6986 3.8711 10 1 -0.4776 2.1362 4.1661 11 1 1.7309 2.5672 5.0703 12 1 0.7322 4.1331 3.5111 13 7 1.6703 2.0926 -1.2644 14 6 2.6513 1.7941 -2.3163 15 6 2.1856 2.4093 -3.6375 16 1 1.1802 2.0570 -3.8681 17 6 2.1760 3.9338 -3.5149 18 6 1.6412 4.5547 -4.8061 19 6 2.5800 4.2082 -5.9658 20 6 2.7138 2.6853 -6.0573 21 6 1.7403 1.9407 -6.9705 22 6 3.2081 2.0924 -7.3760 23 6 3.1421 1.9940 -4.7596 24 1 -0.3633 -1.0274 -0.0258 25 1 -0.3634 0.4913 0.9025 26 1 -0.3633 0.5359 -0.8769 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5174 0.4035 3.5855 30 1 0.7406 1.8246 -1.5505 31 1 2.7437 0.7141 -2.4311 32 1 3.6186 2.2143 -2.0409 33 1 1.5378 4.2261 -2.6809 34 1 3.1908 4.2893 -3.3364 35 1 0.6462 4.1607 -5.0139 36 1 1.5870 5.6375 -4.6934 37 1 3.5599 4.6507 -5.7868 38 1 2.1675 4.5951 -6.8976 39 1 1.4057 0.9536 -6.6515 40 1 1.0044 2.5344 -7.5127 41 1 3.4377 2.7860 -8.1850 42 1 3.8394 1.2054 -7.3238 43 1 3.1024 0.9128 -4.8915 44 1 4.1587 2.2935 -4.5046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695744329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:48 Heat of formation + Delta-G solvation = -22.137867 kcal Electronic energy + Delta-G solvation = -19197.431944 eV Core-core repulsion = 16534.283581 eV Total energy + Delta-G solvation = -2663.148363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44143 -38.37389 -36.12534 -34.24301 -32.90538 -31.21584 -28.55872 -28.02893 -25.74178 -24.88697 -23.34240 -22.83528 -21.30620 -21.14327 -19.42421 -18.10206 -16.78856 -16.43411 -16.25749 -15.88880 -15.48109 -15.24525 -14.83291 -14.47591 -14.28910 -14.14268 -13.65870 -13.57475 -13.09866 -13.07087 -12.77875 -12.56369 -12.47588 -12.42108 -12.29357 -11.94416 -11.88030 -11.80631 -11.68746 -11.48554 -11.34324 -11.05192 -10.81420 -10.71321 -10.42472 -10.31348 -8.85726 -8.04077 -6.12407 1.43277 1.44748 1.54867 2.46774 2.91791 3.24805 3.59031 3.78860 3.86620 4.01295 4.07342 4.22136 4.32037 4.43937 4.47246 4.55211 4.58862 4.66073 4.70142 4.76274 4.81430 4.83802 4.89661 4.94453 5.04060 5.08760 5.11602 5.15564 5.17932 5.32182 5.36041 5.38475 5.40620 5.43825 5.54075 5.60350 5.67041 5.68951 5.75165 5.86926 6.34083 6.72302 6.90376 7.02155 7.55611 9.01559 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035483 B = 0.004591 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.912021 B = 6096.896222 C = 6462.869131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.007 1.007 5 C -0.498 4.498 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.067 3.933 15 C -0.067 4.067 16 H 0.064 0.936 17 C -0.102 4.102 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.175 4.175 22 C -0.171 4.171 23 C -0.071 4.071 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.258 0.742 30 H 0.330 0.670 31 H 0.011 0.989 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 3.370 -18.390 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.010 0.990 5 C -0.537 4.537 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.313 5.313 14 C -0.062 4.062 15 C -0.086 4.086 16 H 0.082 0.918 17 C -0.140 4.140 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.212 4.212 22 C -0.208 4.208 23 C -0.109 4.109 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.498 3.884 -18.071 18.491 hybrid contribution -0.246 -0.861 1.099 1.417 sum -0.743 3.023 -16.973 17.256 Atomic orbital electron populations 1.21439 0.95844 0.99287 1.00905 1.21943 0.96580 1.00143 0.99116 1.18935 0.93413 0.89466 0.87010 0.98951 1.21287 1.30170 1.11317 0.90898 0.92935 1.25603 0.96011 0.95929 1.00993 1.70020 1.40290 1.25420 1.20584 0.85655 0.78312 0.79239 0.79014 1.20141 1.21335 1.19629 1.60718 1.04772 1.62648 1.03115 1.21957 0.95992 0.96414 0.91886 1.21009 0.99018 0.96143 0.92410 0.91783 1.21366 1.00760 0.94176 0.97692 1.21492 0.99006 1.00197 0.94174 1.21128 0.99730 0.91978 0.98531 1.21442 1.05003 0.95166 0.91134 1.23050 0.93102 1.01689 1.03349 1.23043 0.96987 1.03112 0.97632 1.21096 0.98508 0.98880 0.92440 0.93890 0.93927 0.93225 0.95876 0.92184 0.93281 0.85106 0.97048 0.93458 0.92585 0.93266 0.92157 0.91465 0.91719 0.90801 0.89357 0.88167 0.87826 0.88880 0.92240 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.39 71.98 0.68 -4.29 16 2 C -0.14 -6.59 5.50 30.59 0.17 -6.42 16 3 C 0.22 11.20 2.33 44.17 0.10 11.30 16 4 H -0.01 -0.43 7.86 -2.39 -0.02 -0.45 16 5 C -0.50 -27.44 7.35 25.60 0.19 -27.25 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.70 5.22 84.66 0.44 1.14 16 8 N -0.92 -53.45 11.39 21.45 0.24 -53.20 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.68 -28.82 5.65 -495.44 -2.80 -31.62 16 14 C 0.07 2.43 4.87 86.30 0.42 2.85 16 15 C -0.07 -1.90 2.30 -10.75 -0.02 -1.92 16 16 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 17 C -0.10 -2.85 5.03 30.55 0.15 -2.69 16 18 C -0.11 -2.42 5.93 30.63 0.18 -2.23 16 19 C -0.08 -1.45 5.67 30.70 0.17 -1.27 16 20 C -0.13 -2.55 1.97 -52.20 -0.10 -2.65 16 21 C -0.17 -3.13 9.93 30.55 0.30 -2.83 16 22 C -0.17 -2.87 9.99 30.54 0.31 -2.57 16 23 C -0.07 -1.71 4.96 30.71 0.15 -1.56 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.99 7.05 -2.39 -0.02 1.97 16 26 H 0.05 1.87 6.42 -2.38 -0.02 1.86 16 27 H 0.02 1.01 7.24 -2.39 -0.02 0.99 16 28 H 0.06 3.26 6.25 -2.39 -0.01 3.24 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.33 13.19 6.55 -89.70 -0.59 12.60 16 31 H 0.01 0.42 7.23 -2.39 -0.02 0.40 16 32 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.06 1.82 7.67 -2.38 -0.02 1.80 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 44 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -58.36 334.60 2.96 -55.41 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.35 Total: 23.56 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.14 Total: -40.40 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.56 Total: -84.82 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -58.36 2.96 -55.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695744329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.268 kcal (2) G-P(sol) polarization free energy of solvation -58.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds