Wall clock time and date at job start Mon Mar 30 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 H 1.09000 * 109.46881 * 174.08717 * 3 2 1 5 5 C 1.50701 * 109.46946 * 54.08825 * 3 2 1 6 6 H 1.08001 * 120.00258 * 239.99434 * 5 3 2 7 7 C 1.37875 * 120.00017 * 59.99996 * 5 3 2 8 8 N 1.31517 * 120.00284 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 120.00068 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46952 * 59.99633 * 9 7 5 11 11 H 1.48498 * 109.46799 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46515 * 300.00005 * 9 7 5 13 13 N 1.46903 * 109.47288 * 294.08816 * 3 2 1 14 14 C 1.46897 * 110.99832 * 275.76437 * 13 3 2 15 15 C 1.52999 * 109.46890 * 176.27711 * 14 13 3 16 16 C 1.52944 * 109.40798 * 64.85938 * 15 14 13 17 17 C 1.53040 * 109.52654 * 183.08675 * 16 15 14 18 18 C 1.53143 * 108.84420 * 303.38306 * 17 16 15 19 19 C 1.52812 * 117.75077 * 199.62425 * 18 17 16 20 20 C 1.52848 * 117.68068 * 268.50680 * 18 17 16 21 21 C 1.53154 * 115.00865 * 53.94560 * 18 17 16 22 22 C 1.52939 * 109.41333 * 185.14365 * 15 14 13 23 23 H 1.09002 * 109.47321 * 298.55969 * 1 2 3 24 24 H 1.09004 * 109.47610 * 58.55574 * 1 2 3 25 25 H 1.08999 * 109.47169 * 178.56165 * 1 2 3 26 26 H 1.09000 * 109.46938 * 240.00044 * 2 1 3 27 27 H 1.08997 * 109.47511 * 119.99989 * 2 1 3 28 28 H 0.96995 * 120.00330 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99652 * 39.72069 * 13 3 2 30 30 H 1.09002 * 109.46932 * 56.28647 * 14 13 3 31 31 H 1.08998 * 109.47716 * 296.28359 * 14 13 3 32 32 H 1.08996 * 109.41494 * 305.00465 * 15 14 13 33 33 H 1.08999 * 109.47718 * 303.01226 * 16 15 14 34 34 H 1.09002 * 109.47407 * 63.01764 * 16 15 14 35 35 H 1.09000 * 109.58522 * 183.57525 * 17 16 15 36 36 H 1.09002 * 109.59119 * 63.19737 * 17 16 15 37 37 H 1.08993 * 117.50509 * 215.10843 * 19 18 17 38 38 H 1.09000 * 117.50147 * 0.15384 * 19 18 17 39 39 H 1.09007 * 117.49974 * 359.72768 * 20 18 17 40 40 H 1.08996 * 117.50586 * 144.77501 * 20 18 17 41 41 H 1.09001 * 109.56711 * 186.24506 * 21 18 17 42 42 H 1.08991 * 109.66984 * 65.93609 * 21 18 17 43 43 H 1.08995 * 109.47986 * 296.98584 * 22 15 14 44 44 H 1.09004 * 109.46871 * 56.99494 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1248 1.4443 0.1059 5 6 1.4216 2.1939 1.1508 6 1 0.8148 3.0671 0.9618 7 6 1.6308 1.7666 2.4449 8 7 2.3694 0.7031 2.6750 9 14 0.8649 2.6984 3.8714 10 1 -0.6131 2.6966 3.7273 11 1 1.2391 2.0415 5.1495 12 1 1.3605 4.0983 3.8712 13 7 1.6702 2.0927 -1.2644 14 6 2.6512 1.7942 -2.3163 15 6 2.1854 2.4095 -3.6374 16 6 2.1724 3.9337 -3.5116 17 6 1.6339 4.5492 -4.8051 18 6 2.4916 4.0650 -5.9778 19 6 2.4490 4.8753 -7.2727 20 6 3.6918 4.9214 -6.3808 21 6 2.6321 2.5443 -6.0927 22 6 3.1393 1.9911 -4.7573 23 1 -0.3634 0.4913 0.9026 24 1 -0.3634 0.5361 -0.8768 25 1 -0.3633 -1.0273 -0.0258 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.5162 0.4023 3.5854 29 1 0.7405 1.8246 -1.5504 30 1 2.7435 0.7142 -2.4311 31 1 3.6185 2.2143 -2.0409 32 1 1.1801 2.0564 -3.8670 33 1 1.5320 4.2242 -2.6788 34 1 3.1861 4.2922 -3.3326 35 1 1.6835 5.6362 -4.7408 36 1 0.6003 4.2375 -4.9555 37 1 2.5237 4.3275 -8.2120 38 1 1.8109 5.7588 -7.2928 39 1 3.8711 5.8351 -5.8141 40 1 4.5838 4.4037 -6.7333 41 1 3.3437 2.3020 -6.8820 42 1 1.6633 2.1029 -6.3263 43 1 4.1342 2.3872 -4.5542 44 1 3.1847 0.9032 -4.8083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695757160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:15 Heat of formation + Delta-G solvation = -8.942489 kcal Electronic energy + Delta-G solvation = -19136.085675 eV Core-core repulsion = 16473.509507 eV Total energy + Delta-G solvation = -2662.576169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.43315 -36.80892 -34.92791 -32.17748 -30.79768 -30.47332 -27.97838 -25.91996 -23.40169 -23.02461 -22.55817 -22.30232 -20.17278 -19.26177 -18.49079 -16.10267 -15.36152 -15.20517 -14.75413 -14.51922 -14.13308 -13.56975 -13.38145 -13.32490 -12.83463 -12.43828 -12.29950 -12.08774 -12.07798 -11.63797 -11.46823 -11.33662 -11.04569 -10.87989 -10.81432 -10.56932 -10.48007 -10.29440 -9.98755 -9.93036 -9.78301 -9.66912 -9.50610 -9.38436 -8.90298 -8.29560 -7.09685 -5.92676 -3.93966 3.36864 3.41129 3.44434 3.73972 4.47947 4.59381 4.74903 4.84005 4.99341 5.09965 5.23221 5.38908 5.47962 5.52247 5.56614 5.60209 5.71402 5.74491 5.82788 5.95780 6.02635 6.06140 6.09259 6.16935 6.26586 6.28765 6.32518 6.39537 6.42029 6.47300 6.57645 6.62572 6.81029 6.84284 6.95275 7.34124 7.36711 7.55726 7.75694 7.94620 8.35602 8.63765 8.71333 9.11698 9.69576 11.14444 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.004481 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.055351 B = 6246.905536 C = 6627.011300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.064 3.936 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.082 4.082 18 C -0.115 4.115 19 C -0.183 4.183 20 C -0.175 4.175 21 C -0.079 4.079 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.010 0.990 27 H 0.091 0.909 28 H 0.259 0.741 29 H 0.324 0.676 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 3.911 -16.503 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.313 5.313 14 C -0.066 4.066 15 C -0.100 4.100 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.220 4.220 20 C -0.212 4.212 21 C -0.116 4.116 22 C -0.149 4.149 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.592 4.411 -16.164 16.766 hybrid contribution -0.507 -0.551 0.587 0.952 sum 0.085 3.860 -15.577 16.048 Atomic orbital electron populations 1.21557 0.97731 0.97872 1.01231 1.22093 0.94973 1.01309 1.00060 1.19175 0.95930 0.88537 0.85640 0.95124 1.21040 1.30327 1.11410 0.89799 0.92162 1.24912 0.95622 0.95181 0.98670 1.69877 1.39373 1.24174 1.20312 0.86652 0.79602 0.80047 0.81615 1.20424 1.21567 1.20386 1.60844 1.03864 1.63027 1.03547 1.21937 0.97194 0.96459 0.91020 1.21114 0.98632 0.96052 0.94220 1.21419 1.01613 0.94387 0.96481 1.21178 0.98147 0.99266 0.93367 1.21540 1.00586 0.93609 0.95768 1.22980 1.01677 1.02628 0.94701 1.22985 0.92398 1.02119 1.03730 1.21118 1.00897 0.92147 0.97444 1.21542 0.99437 0.99825 0.94075 0.91575 0.95182 0.96037 0.97171 0.89101 0.93149 0.85823 0.96632 0.92072 0.91979 0.90125 0.92491 0.92341 0.91860 0.89271 0.89138 0.89025 0.89204 0.92399 0.91774 0.91994 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.39 37.16 0.35 -2.38 16 2 C -0.14 -3.42 5.50 -26.73 -0.15 -3.57 16 3 C 0.22 5.33 2.33 -68.86 -0.16 5.17 16 4 H 0.03 0.85 7.86 -51.93 -0.41 0.44 16 5 C -0.49 -13.20 7.35 -34.44 -0.25 -13.45 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.51 11.39 55.43 0.63 -24.88 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.24 5.65 -107.95 -0.61 -14.85 16 14 C 0.06 1.14 4.87 -3.83 -0.02 1.12 16 15 C -0.08 -1.17 2.21 -90.68 -0.20 -1.37 16 16 C -0.10 -1.44 5.11 -26.74 -0.14 -1.58 16 17 C -0.08 -0.98 5.67 -26.64 -0.15 -1.13 16 18 C -0.12 -1.26 1.97 -154.53 -0.30 -1.57 16 19 C -0.18 -1.76 9.99 -26.81 -0.27 -2.02 16 20 C -0.18 -1.78 9.93 -26.79 -0.27 -2.05 16 21 C -0.08 -0.86 5.67 -26.56 -0.15 -1.01 16 22 C -0.11 -1.37 5.20 -26.67 -0.14 -1.51 16 23 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 24 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 27 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.32 6.52 6.55 -39.29 -0.26 6.26 16 30 H 0.02 0.29 7.23 -51.93 -0.38 -0.09 16 31 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.08 1.30 7.66 -51.93 -0.40 0.90 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -27.13 334.56 -10.19 -37.32 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.30 Total: 4.82 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -1.94 Total: -23.89 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.02 Total: -39.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.13 -10.19 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695757160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.382 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds