Wall clock time and date at job start Mon Mar 30 2020 07:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 H 1.09005 * 109.46953 * 179.87026 * 3 2 1 5 5 C 1.50700 * 109.47421 * 299.86797 * 3 2 1 6 6 H 1.07995 * 119.99817 * 119.99698 * 5 3 2 7 7 C 1.37873 * 119.99898 * 300.00312 * 5 3 2 8 8 N 1.31511 * 120.00355 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46973 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47193 * 119.99566 * 9 7 5 12 12 H 1.48503 * 109.47161 * 240.00068 * 9 7 5 13 13 N 1.46900 * 109.46787 * 59.87181 * 3 2 1 14 14 C 1.46900 * 111.00146 * 85.19386 * 13 3 2 15 15 C 1.52996 * 109.47256 * 185.29587 * 14 13 3 16 16 C 1.52938 * 109.41733 * 174.99859 * 15 14 13 17 17 C 1.53177 * 109.45366 * 183.02259 * 16 15 14 18 18 C 1.53144 * 108.88475 * 303.43136 * 17 16 15 19 19 C 1.52805 * 117.75570 * 199.62500 * 18 17 16 20 20 C 1.52850 * 117.67715 * 268.50833 * 18 17 16 21 21 C 1.53150 * 115.00699 * 53.93490 * 18 17 16 22 22 C 1.52942 * 109.35545 * 295.32408 * 15 14 13 23 23 H 1.09002 * 109.47518 * 185.38961 * 1 2 3 24 24 H 1.09004 * 109.46895 * 305.39062 * 1 2 3 25 25 H 1.09008 * 109.47385 * 65.38885 * 1 2 3 26 26 H 1.09000 * 109.46899 * 240.00724 * 2 1 3 27 27 H 1.08995 * 109.47503 * 120.00264 * 2 1 3 28 28 H 0.96997 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00902 * 110.99685 * 209.15147 * 13 3 2 30 30 H 1.09004 * 109.46925 * 65.29497 * 14 13 3 31 31 H 1.09002 * 109.47282 * 305.29833 * 14 13 3 32 32 H 1.09000 * 109.41177 * 55.14056 * 15 14 13 33 33 H 1.09001 * 109.47215 * 63.02634 * 16 15 14 34 34 H 1.09006 * 109.47769 * 303.01923 * 16 15 14 35 35 H 1.09002 * 109.56972 * 183.60807 * 17 16 15 36 36 H 1.09009 * 109.56683 * 63.24876 * 17 16 15 37 37 H 1.09003 * 117.49820 * 0.14274 * 19 18 17 38 38 H 1.08999 * 117.50377 * 215.10779 * 19 18 17 39 39 H 1.09003 * 117.50559 * 144.77839 * 20 18 17 40 40 H 1.08997 * 117.52437 * 359.70674 * 20 18 17 41 41 H 1.08991 * 109.57173 * 65.88973 * 21 18 17 42 42 H 1.08999 * 109.57017 * 186.25266 * 21 18 17 43 43 H 1.08999 * 109.47208 * 296.93815 * 22 15 14 44 44 H 1.08999 * 109.47289 * 56.95003 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 0.0023 5 6 1.5403 2.1521 -1.2321 6 1 0.9192 3.0302 -1.1349 7 6 1.8761 1.6801 -2.4832 8 7 2.6328 0.6110 -2.6015 9 14 1.2562 2.5591 -4.0105 10 1 0.4295 3.7256 -3.6089 11 1 2.4126 3.0256 -4.8168 12 1 0.4331 1.6248 -4.8197 13 7 1.5477 2.1359 1.1979 14 6 2.4314 1.8946 2.3463 15 6 1.8193 2.5202 3.6012 16 6 2.6754 2.1626 4.8170 17 6 2.0228 2.7247 6.0836 18 6 1.8397 4.2361 5.9179 19 6 1.6440 5.0720 7.1820 20 6 2.9643 5.1459 6.4118 21 6 1.0821 4.6621 4.6570 22 6 1.7639 4.0395 3.4347 23 1 -0.3634 -1.0231 0.0965 24 1 -0.3633 0.5952 0.8378 25 1 -0.3634 0.4280 -0.9344 26 1 1.8932 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.8693 0.2791 -3.4817 29 1 1.4407 3.1242 1.0253 30 1 3.4063 2.3433 2.1551 31 1 2.5485 0.8212 2.4955 32 1 0.8098 2.1343 3.7428 33 1 3.6705 2.5918 4.6996 34 1 2.7547 1.0785 4.8995 35 1 2.6633 2.5266 6.9431 36 1 1.0513 2.2536 6.2337 37 1 1.6474 4.5477 8.1376 38 1 0.9758 5.9309 7.1191 39 1 3.1647 6.0533 5.8421 40 1 3.8363 4.6704 6.8609 41 1 0.0507 4.3148 4.7160 42 1 1.0989 5.7485 4.5704 43 1 2.7767 4.4323 3.3442 44 1 1.1968 4.2863 2.5372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695757161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:18 Heat of formation + Delta-G solvation = -9.937525 kcal Electronic energy + Delta-G solvation = -19138.202445 eV Core-core repulsion = 16475.583128 eV Total energy + Delta-G solvation = -2662.619317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46512 -36.68335 -34.84426 -32.18516 -30.86562 -30.50382 -28.10182 -25.85241 -23.34070 -23.18821 -22.54475 -22.28665 -20.10536 -18.89939 -18.53483 -16.40765 -15.38285 -15.22218 -14.94149 -14.39031 -13.90540 -13.74790 -13.30851 -13.26635 -12.82389 -12.75726 -12.16862 -12.07425 -11.93467 -11.70053 -11.55941 -11.23465 -10.99965 -10.93016 -10.81320 -10.56573 -10.38190 -10.32772 -10.00400 -9.88832 -9.79998 -9.69516 -9.42658 -9.28287 -8.70639 -8.43578 -7.13877 -5.98704 -4.03901 3.29837 3.38080 3.41845 3.71399 4.42633 4.56653 4.72068 4.81931 4.95633 5.09758 5.21545 5.32686 5.43643 5.50561 5.54475 5.59658 5.65511 5.75378 5.80318 5.86194 6.02450 6.03966 6.07572 6.15168 6.22728 6.28233 6.36876 6.39946 6.49802 6.58903 6.68951 6.76158 6.81572 6.90908 7.28784 7.38660 7.54892 7.78055 7.83968 7.90568 8.32870 8.46440 8.75070 9.06811 9.60983 11.07298 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.004487 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.745215 B = 6238.490504 C = 6613.742205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.685 5.685 14 C 0.065 3.935 15 C -0.081 4.081 16 C -0.110 4.110 17 C -0.079 4.079 18 C -0.115 4.115 19 C -0.182 4.182 20 C -0.176 4.176 21 C -0.079 4.079 22 C -0.111 4.111 23 H 0.011 0.989 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.009 0.991 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 5.693 16.083 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.317 5.317 14 C -0.065 4.065 15 C -0.099 4.099 16 C -0.148 4.148 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.219 4.219 20 C -0.213 4.213 21 C -0.117 4.117 22 C -0.148 4.148 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.072 5.068 16.092 16.906 hybrid contribution 0.571 0.962 -1.103 1.571 sum -0.501 6.030 14.989 16.164 Atomic orbital electron populations 1.21436 0.97580 0.97073 1.01538 1.21422 0.94979 0.98349 0.99302 1.19105 0.92826 0.91504 0.85862 0.98447 1.21235 1.31368 1.11854 0.90391 0.92342 1.24885 0.95103 0.95019 0.98895 1.69897 1.36850 1.22843 1.23266 0.86544 0.78560 0.79719 0.83204 1.19786 1.21192 1.21037 1.60684 1.49724 1.15278 1.05984 1.21909 0.93730 0.99587 0.91248 1.21111 0.99895 0.94955 0.93985 1.21534 0.99088 1.00127 0.94095 1.21127 1.00693 0.92131 0.97679 1.21528 1.01590 0.93433 0.94944 1.22978 1.00288 1.02707 0.95900 1.22989 0.92445 1.01861 1.04027 1.21138 0.98685 0.99345 0.92501 1.21552 1.00504 0.95453 0.97318 0.96945 0.93326 0.93104 0.89666 0.97274 0.93083 0.85374 0.96732 0.92068 0.90720 0.92266 0.92049 0.92379 0.91603 0.89195 0.89127 0.89096 0.89175 0.91557 0.92363 0.92535 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.48 37.15 0.35 -2.36 16 2 C -0.10 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.21 5.38 2.30 -68.86 -0.16 5.23 16 4 H 0.00 -0.06 7.86 -51.93 -0.41 -0.47 16 5 C -0.51 -13.76 7.44 -34.44 -0.26 -14.01 16 6 H 0.06 1.57 7.61 -52.49 -0.40 1.17 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.36 11.32 55.43 0.63 -24.73 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.69 -14.34 5.38 -107.95 -0.58 -14.92 16 14 C 0.07 1.17 4.91 -3.83 -0.02 1.16 16 15 C -0.08 -1.16 2.31 -90.68 -0.21 -1.37 16 16 C -0.11 -1.37 5.21 -26.67 -0.14 -1.51 16 17 C -0.08 -0.86 5.67 -26.57 -0.15 -1.01 16 18 C -0.11 -1.24 1.97 -154.53 -0.31 -1.54 16 19 C -0.18 -1.71 9.99 -26.81 -0.27 -1.98 16 20 C -0.18 -1.75 9.93 -26.79 -0.27 -2.02 16 21 C -0.08 -0.92 5.67 -26.56 -0.15 -1.07 16 22 C -0.11 -1.49 5.03 -26.67 -0.13 -1.63 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.05 1.07 7.44 -51.93 -0.39 0.68 16 25 H 0.05 1.24 7.42 -51.92 -0.39 0.85 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 27 H 0.01 0.20 7.40 -51.93 -0.38 -0.18 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.76 6.58 -39.29 -0.26 6.51 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 1.15 7.34 -51.93 -0.38 0.77 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.02 6.65 -51.93 -0.35 0.67 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -27.37 334.91 -10.19 -37.56 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.31 Total: 3.98 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.95 Total: -23.15 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.05 Total: -39.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.37 -10.19 -37.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695757161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.623 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds