Wall clock time and date at job start Mon Mar 30 2020 07:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 H 1.09005 * 109.46953 * 179.87026 * 3 2 1 5 5 C 1.50700 * 109.47421 * 299.86797 * 3 2 1 6 6 H 1.07995 * 119.99817 * 119.99698 * 5 3 2 7 7 C 1.37873 * 119.99898 * 300.00312 * 5 3 2 8 8 N 1.31511 * 120.00355 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46973 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47193 * 119.99566 * 9 7 5 12 12 H 1.48503 * 109.47161 * 240.00068 * 9 7 5 13 13 N 1.46900 * 109.46787 * 59.87181 * 3 2 1 14 14 C 1.46900 * 111.00146 * 85.19386 * 13 3 2 15 15 C 1.52996 * 109.47256 * 185.29587 * 14 13 3 16 16 C 1.52938 * 109.41733 * 174.99859 * 15 14 13 17 17 C 1.53177 * 109.45366 * 183.02259 * 16 15 14 18 18 C 1.53144 * 108.88475 * 303.43136 * 17 16 15 19 19 C 1.52805 * 117.75570 * 199.62500 * 18 17 16 20 20 C 1.52850 * 117.67715 * 268.50833 * 18 17 16 21 21 C 1.53150 * 115.00699 * 53.93490 * 18 17 16 22 22 C 1.52942 * 109.35545 * 295.32408 * 15 14 13 23 23 H 1.09002 * 109.47518 * 185.38961 * 1 2 3 24 24 H 1.09004 * 109.46895 * 305.39062 * 1 2 3 25 25 H 1.09008 * 109.47385 * 65.38885 * 1 2 3 26 26 H 1.09000 * 109.46899 * 240.00724 * 2 1 3 27 27 H 1.08995 * 109.47503 * 120.00264 * 2 1 3 28 28 H 0.96997 * 120.00151 * 180.02562 * 8 7 5 29 29 H 1.00902 * 110.99685 * 209.15147 * 13 3 2 30 30 H 1.09004 * 109.46925 * 65.29497 * 14 13 3 31 31 H 1.09002 * 109.47282 * 305.29833 * 14 13 3 32 32 H 1.09000 * 109.41177 * 55.14056 * 15 14 13 33 33 H 1.09001 * 109.47215 * 63.02634 * 16 15 14 34 34 H 1.09006 * 109.47769 * 303.01923 * 16 15 14 35 35 H 1.09002 * 109.56972 * 183.60807 * 17 16 15 36 36 H 1.09009 * 109.56683 * 63.24876 * 17 16 15 37 37 H 1.09003 * 117.49820 * 0.14274 * 19 18 17 38 38 H 1.08999 * 117.50377 * 215.10779 * 19 18 17 39 39 H 1.09003 * 117.50559 * 144.77839 * 20 18 17 40 40 H 1.08997 * 117.52437 * 359.70674 * 20 18 17 41 41 H 1.08991 * 109.57173 * 65.88973 * 21 18 17 42 42 H 1.08999 * 109.57017 * 186.25266 * 21 18 17 43 43 H 1.08999 * 109.47208 * 296.93815 * 22 15 14 44 44 H 1.08999 * 109.47289 * 56.95003 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 0.0023 5 6 1.5403 2.1521 -1.2321 6 1 0.9192 3.0302 -1.1349 7 6 1.8761 1.6801 -2.4832 8 7 2.6328 0.6110 -2.6015 9 14 1.2562 2.5591 -4.0105 10 1 0.4295 3.7256 -3.6089 11 1 2.4126 3.0256 -4.8168 12 1 0.4331 1.6248 -4.8197 13 7 1.5477 2.1359 1.1979 14 6 2.4314 1.8946 2.3463 15 6 1.8193 2.5202 3.6012 16 6 2.6754 2.1626 4.8170 17 6 2.0228 2.7247 6.0836 18 6 1.8397 4.2361 5.9179 19 6 1.6440 5.0720 7.1820 20 6 2.9643 5.1459 6.4118 21 6 1.0821 4.6621 4.6570 22 6 1.7639 4.0395 3.4347 23 1 -0.3634 -1.0231 0.0965 24 1 -0.3633 0.5952 0.8378 25 1 -0.3634 0.4280 -0.9344 26 1 1.8932 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.8693 0.2791 -3.4817 29 1 1.4407 3.1242 1.0253 30 1 3.4063 2.3433 2.1551 31 1 2.5485 0.8212 2.4955 32 1 0.8098 2.1343 3.7428 33 1 3.6705 2.5918 4.6996 34 1 2.7547 1.0785 4.8995 35 1 2.6633 2.5266 6.9431 36 1 1.0513 2.2536 6.2337 37 1 1.6474 4.5477 8.1376 38 1 0.9758 5.9309 7.1191 39 1 3.1647 6.0533 5.8421 40 1 3.8363 4.6704 6.8609 41 1 0.0507 4.3148 4.7160 42 1 1.0989 5.7485 4.5704 43 1 2.7767 4.4323 3.3442 44 1 1.1968 4.2863 2.5372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695757161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:17 Heat of formation + Delta-G solvation = -23.019230 kcal Electronic energy + Delta-G solvation = -19138.769710 eV Core-core repulsion = 16475.583128 eV Total energy + Delta-G solvation = -2663.186582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42764 -38.26475 -36.25873 -34.01728 -32.36693 -31.76588 -29.54098 -27.63669 -25.15483 -24.54169 -23.58470 -23.16684 -21.32099 -20.78068 -19.48778 -18.39131 -16.93260 -16.22938 -16.16493 -16.05728 -15.48911 -15.10843 -14.78497 -14.49355 -14.17725 -14.12491 -13.69736 -13.60417 -13.14101 -13.00584 -12.84521 -12.66836 -12.49880 -12.40103 -12.24005 -12.08261 -11.89404 -11.83762 -11.52583 -11.36217 -11.24866 -10.94274 -10.75954 -10.68234 -10.53306 -10.34752 -8.94892 -8.09107 -6.21513 1.40599 1.43128 1.53976 2.42897 2.93209 3.19550 3.64341 3.73147 3.85044 3.99485 4.07952 4.16316 4.32826 4.44107 4.49174 4.62663 4.65085 4.66762 4.75857 4.81368 4.84023 4.86945 4.96297 5.01966 5.06266 5.09127 5.19678 5.22043 5.25802 5.29219 5.32503 5.33800 5.39467 5.44448 5.57380 5.60184 5.65497 5.72918 5.82914 5.92571 6.29739 6.53331 6.84244 7.06710 7.47668 8.96317 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.004487 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.745215 B = 6238.490504 C = 6613.742205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.220 3.780 4 H -0.041 1.041 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.068 3.932 15 C -0.069 4.069 16 C -0.107 4.107 17 C -0.074 4.074 18 C -0.130 4.130 19 C -0.169 4.169 20 C -0.178 4.178 21 C -0.074 4.074 22 C -0.107 4.107 23 H 0.034 0.966 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.005 0.995 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 6.573 17.462 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.111 3.889 4 H -0.024 1.024 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.309 5.309 14 C -0.062 4.062 15 C -0.088 4.088 16 C -0.145 4.145 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.206 4.206 20 C -0.215 4.215 21 C -0.111 4.111 22 C -0.145 4.145 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.942 5.958 17.491 18.580 hybrid contribution 0.885 0.678 -1.506 1.873 sum -1.057 6.636 15.985 17.341 Atomic orbital electron populations 1.21294 0.95866 0.98478 1.00720 1.21305 0.96385 0.97716 0.98299 1.18915 0.90457 0.92324 0.87192 1.02371 1.21485 1.31265 1.11915 0.91361 0.92481 1.25641 0.95246 0.95662 1.01774 1.70031 1.37796 1.24062 1.23892 0.85554 0.78046 0.78763 0.79562 1.19011 1.20892 1.20755 1.60633 1.49956 1.15120 1.05202 1.21964 0.93163 0.99310 0.91749 1.20997 0.99579 0.95321 0.92931 1.21488 0.98635 1.00373 0.93962 1.21087 1.00870 0.92155 0.97013 1.21504 1.02584 0.93541 0.95355 1.23042 0.99700 1.02312 0.95537 1.23049 0.92803 1.01589 1.04084 1.21071 0.98491 0.99640 0.91945 1.21493 1.00283 0.94797 0.97945 0.94711 0.92549 0.95044 0.92517 0.96364 0.93064 0.85153 0.97697 0.92992 0.91237 0.92509 0.91898 0.90931 0.91418 0.88093 0.88490 0.89133 0.88654 0.91598 0.91569 0.93003 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.48 71.98 0.68 -4.09 16 2 C -0.10 -4.91 5.57 30.59 0.17 -4.73 16 3 C 0.22 11.28 2.30 44.17 0.10 11.38 16 4 H -0.04 -2.40 7.86 -2.38 -0.02 -2.41 16 5 C -0.52 -28.50 7.44 25.60 0.19 -28.31 16 6 H 0.06 3.07 7.61 -2.91 -0.02 3.05 16 7 C 0.02 0.87 5.30 84.65 0.45 1.32 16 8 N -0.92 -53.32 11.32 21.45 0.24 -53.07 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.68 -28.68 5.38 -495.43 -2.67 -31.34 16 14 C 0.07 2.46 4.91 86.30 0.42 2.89 16 15 C -0.07 -1.95 2.31 -10.83 -0.03 -1.98 16 16 C -0.11 -2.50 5.21 30.63 0.16 -2.34 16 17 C -0.07 -1.44 5.67 30.70 0.17 -1.26 16 18 C -0.13 -2.50 1.97 -52.20 -0.10 -2.60 16 19 C -0.17 -2.69 9.99 30.54 0.31 -2.38 16 20 C -0.18 -3.12 9.93 30.56 0.30 -2.82 16 21 C -0.07 -1.59 5.67 30.70 0.17 -1.42 16 22 C -0.11 -2.83 5.03 30.64 0.15 -2.67 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 2.41 7.44 -2.39 -0.02 2.39 16 25 H 0.03 1.50 7.42 -2.38 -0.02 1.48 16 26 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 27 H 0.02 0.84 7.40 -2.39 -0.02 0.82 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.33 13.76 6.58 -89.69 -0.59 13.17 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 31 H 0.05 1.97 7.34 -2.39 -0.02 1.95 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 36 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.61 6.65 -2.39 -0.02 1.60 16 Total: -1.00 -58.33 334.91 3.11 -55.22 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.35 Total: 22.49 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.16 Total: -39.03 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.42 Total: -84.42 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -58.33 3.11 -55.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695757161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.199 kcal (2) G-P(sol) polarization free energy of solvation -58.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds