Wall clock time and date at job start Mon Mar 30 2020 07:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47571 * 2 1 4 4 H 1.09002 * 109.47060 * 306.51737 * 3 2 1 5 5 C 1.50700 * 109.47150 * 186.52078 * 3 2 1 6 6 H 1.08004 * 120.00014 * 244.78643 * 5 3 2 7 7 C 1.37875 * 120.00074 * 64.78590 * 5 3 2 8 8 N 1.31506 * 120.00157 * 9.38409 * 7 5 3 9 9 Si 1.86808 * 119.99881 * 189.38581 * 7 5 3 10 10 H 1.48501 * 109.46945 * 269.99842 * 9 7 5 11 11 H 1.48503 * 109.46983 * 29.99753 * 9 7 5 12 12 H 1.48501 * 109.46956 * 149.99971 * 9 7 5 13 13 N 1.46902 * 109.47233 * 66.51770 * 3 2 1 14 14 C 1.46900 * 110.99958 * 211.92915 * 13 3 2 15 15 C 1.52998 * 109.47129 * 61.24743 * 14 13 3 16 16 C 1.53003 * 109.47088 * 62.29526 * 15 14 13 17 17 C 1.53000 * 109.46844 * 181.24691 * 14 13 3 18 18 C 1.53003 * 117.50069 * 15.38154 * 17 14 13 19 19 C 1.53002 * 117.49928 * 306.71872 * 17 14 13 20 20 C 1.53000 * 109.46932 * 301.24481 * 14 13 3 21 21 C 1.53001 * 117.49540 * 137.98633 * 20 14 13 22 22 C 1.53001 * 117.49851 * 69.32615 * 20 14 13 23 23 H 1.09001 * 109.47522 * 57.82506 * 1 2 3 24 24 H 1.08995 * 109.47889 * 177.83495 * 1 2 3 25 25 H 1.09006 * 109.46949 * 297.82964 * 1 2 3 26 26 H 1.09002 * 109.46760 * 239.99473 * 2 1 3 27 27 H 1.09005 * 109.47223 * 120.00421 * 2 1 3 28 28 H 0.97003 * 120.00068 * 356.47788 * 8 7 5 29 29 H 1.00903 * 111.00103 * 335.88515 * 13 3 2 30 30 H 1.08998 * 109.46853 * 182.29464 * 15 14 13 31 31 H 1.08994 * 109.46850 * 302.29426 * 15 14 13 32 32 H 1.08997 * 109.47264 * 311.83855 * 16 15 14 33 33 H 1.09003 * 109.46855 * 71.83767 * 16 15 14 34 34 H 1.08996 * 109.47155 * 191.83510 * 16 15 14 35 35 H 1.08996 * 115.54860 * 161.04690 * 17 14 13 36 36 H 1.09002 * 117.49925 * 359.97438 * 18 17 14 37 37 H 1.08999 * 117.50300 * 145.01798 * 18 17 14 38 38 H 1.08993 * 117.49922 * 214.97696 * 19 17 14 39 39 H 1.08999 * 117.49815 * 359.97438 * 19 17 14 40 40 H 1.08999 * 115.55215 * 283.65288 * 20 14 13 41 41 H 1.09005 * 117.49714 * 359.97438 * 21 20 14 42 42 H 1.09000 * 117.49773 * 145.02117 * 21 20 14 43 43 H 1.08997 * 117.49899 * 214.97179 * 22 20 14 44 44 H 1.09001 * 117.49748 * 359.97423 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5847 1.9888 -0.8259 5 6 3.5384 1.4454 -0.1614 6 1 4.1668 1.8125 0.6367 7 6 4.1071 0.9793 -1.3277 8 7 3.3478 0.7061 -2.3661 9 14 5.9563 0.7359 -1.4329 10 1 6.5936 1.9876 -1.9149 11 1 6.4880 0.3955 -0.0888 12 1 6.2571 -0.3687 -2.3787 13 7 1.6830 2.0881 1.2703 14 6 1.4395 3.5243 1.0806 15 6 0.2694 3.7200 0.1145 16 6 -0.9980 3.1120 0.7188 17 6 1.1017 4.1665 2.4276 18 6 1.4229 3.3668 3.6919 19 6 -0.0307 3.5407 3.2444 20 6 2.6940 4.1822 0.5023 21 6 2.5010 5.2160 -0.6090 22 6 3.0734 3.8350 -0.9387 23 1 -0.3634 0.5472 -0.8698 24 1 -0.3635 -1.0268 -0.0388 25 1 -0.3633 0.4798 0.9089 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.3834 0.7835 -2.2955 29 1 0.8844 1.6386 1.6925 30 1 0.1149 4.7851 -0.0579 31 1 0.4933 3.2274 -0.8316 32 1 -0.7809 2.1084 1.0843 33 1 -1.3404 3.7338 1.5460 34 1 -1.7755 3.0610 -0.0434 35 1 1.2169 5.2493 2.4742 36 1 1.8745 2.3831 3.5640 37 1 1.7490 3.9236 4.5704 38 1 -0.6601 4.2118 3.8286 39 1 -0.5352 2.6717 2.8219 40 1 3.5058 4.3497 1.2101 41 1 1.4804 5.4270 -0.9284 42 1 3.1862 6.0633 -0.6326 43 1 4.1348 3.7746 -1.1790 44 1 2.4295 3.1376 -1.4745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704667859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:44 Heat of formation + Delta-G solvation = 66.538111 kcal Electronic energy + Delta-G solvation = -20992.809584 eV Core-core repulsion = 18333.506500 eV Total energy + Delta-G solvation = -2659.303084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91107 -36.16587 -35.08036 -32.77090 -31.33039 -30.30600 -26.85755 -25.29241 -23.27793 -22.33260 -21.76298 -21.51140 -20.51702 -19.75741 -17.82125 -16.57943 -15.66993 -15.14844 -14.53919 -14.49202 -14.10561 -13.69171 -13.65941 -12.78050 -12.62182 -12.38464 -12.13601 -11.95440 -11.54433 -11.20018 -10.96988 -10.84440 -10.77510 -10.65787 -10.52140 -10.33566 -10.27465 -10.06404 -9.82303 -9.71634 -9.65057 -9.43940 -9.09326 -8.75470 -8.57495 -8.17213 -7.12643 -6.18754 -3.82786 3.47458 3.52332 3.67261 4.22422 4.57958 4.73872 5.08802 5.23535 5.31993 5.42358 5.45230 5.48106 5.55296 5.63434 5.84800 5.85017 5.89460 5.96992 5.97366 6.05392 6.15547 6.16855 6.20993 6.27401 6.35387 6.41153 6.46477 6.51097 6.59121 6.69663 6.73153 6.80469 6.90247 6.94042 6.99924 7.21665 7.26378 7.38062 7.53014 8.15693 8.28602 8.55995 8.82382 9.05369 9.77946 11.14691 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.009424 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.906342 B = 2970.464340 C = 3357.255069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.199 3.801 4 H 0.016 0.984 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 1.059 2.941 10 H -0.292 1.292 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.665 5.665 14 C 0.186 3.814 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.132 4.132 18 C -0.169 4.169 19 C -0.197 4.197 20 C -0.116 4.116 21 C -0.231 4.231 22 C -0.102 4.102 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.267 0.733 29 H 0.315 0.685 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 5.312 6.651 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.091 3.909 4 H 0.033 0.967 5 C -0.586 4.586 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.557 5.557 9 Si 0.890 3.110 10 H -0.219 1.219 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.297 5.297 14 C 0.095 3.905 15 C -0.193 4.193 16 C -0.220 4.220 17 C -0.150 4.150 18 C -0.206 4.206 19 C -0.234 4.234 20 C -0.135 4.135 21 C -0.269 4.269 22 C -0.139 4.139 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.482 4.925 5.830 8.851 hybrid contribution -2.046 0.474 0.653 2.199 sum -6.528 5.399 6.484 10.668 Atomic orbital electron populations 1.22033 0.99121 0.99928 1.00145 1.21952 0.91883 1.01418 1.02017 1.19627 0.96484 0.88619 0.86145 0.96729 1.21860 0.90750 1.42685 1.03286 0.92750 1.25519 1.06053 0.94903 0.92296 1.70796 1.06617 1.48026 1.30225 0.83669 0.75442 0.76670 0.75262 1.21880 1.21677 1.21427 1.60832 1.40225 1.00354 1.28276 1.19603 0.91199 0.89376 0.90363 1.22330 0.95664 1.00690 1.00611 1.22297 0.97644 1.01313 1.00748 1.22256 1.02514 0.97845 0.92433 1.22975 0.97462 1.03310 0.96833 1.23213 0.91907 1.03667 1.04575 1.21756 0.98177 1.01239 0.92338 1.23426 1.01547 0.94884 1.07033 1.22877 1.01377 0.92752 0.96850 0.93690 0.94211 0.93782 0.91065 0.93247 0.92134 0.86519 0.92152 0.91159 0.92094 0.91983 0.93930 0.88614 0.86954 0.90303 0.89935 0.88464 0.89142 0.89843 0.90656 0.89891 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.29 37.16 0.35 -2.44 16 2 C -0.13 -2.91 5.13 -26.74 -0.14 -3.05 16 3 C 0.20 4.44 0.89 -68.87 -0.06 4.38 16 4 H 0.02 0.37 2.85 -51.93 -0.15 0.22 16 5 C -0.55 -13.89 4.93 -34.44 -0.17 -14.06 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.02 0.40 4.40 -17.82 -0.08 0.32 16 8 N -0.92 -25.61 13.01 55.43 0.72 -24.89 16 9 Si 1.06 24.75 29.91 -169.99 -5.09 19.67 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.67 -13.01 4.48 -94.25 -0.42 -13.43 16 14 C 0.19 3.30 0.63 -131.60 -0.08 3.22 16 15 C -0.15 -2.60 3.66 -26.73 -0.10 -2.70 16 16 C -0.16 -2.40 8.12 37.16 0.30 -2.10 16 17 C -0.13 -2.05 4.97 -90.62 -0.45 -2.50 16 18 C -0.17 -2.51 9.79 -26.69 -0.26 -2.77 16 19 C -0.20 -2.68 7.48 -26.69 -0.20 -2.88 16 20 C -0.12 -2.26 4.53 -90.62 -0.41 -2.67 16 21 C -0.23 -4.14 9.71 -26.69 -0.26 -4.40 16 22 C -0.10 -2.18 6.13 -26.69 -0.16 -2.34 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.72 4.66 -51.93 -0.24 0.48 16 26 H 0.07 1.74 6.30 -51.93 -0.33 1.41 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.27 7.42 6.05 -40.82 -0.25 7.17 16 29 H 0.32 5.78 3.74 -39.29 -0.15 5.64 16 30 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 31 H 0.07 1.36 5.21 -51.93 -0.27 1.09 16 32 H 0.06 0.92 2.83 -51.93 -0.15 0.77 16 33 H 0.06 0.83 5.73 -51.93 -0.30 0.53 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.11 1.88 6.97 -51.93 -0.36 1.52 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.34 4.80 -51.93 -0.25 1.09 16 40 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.08 1.42 5.84 -51.93 -0.30 1.11 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.91 7.86 -51.93 -0.41 1.50 16 44 H 0.11 2.53 4.47 -51.93 -0.23 2.30 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -25.88 303.10 -8.66 -34.55 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.72 Total: 13.53 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: -1.72 Total: -33.99 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.30 Total: -38.32 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.88 -8.66 -34.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704667859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.084 kcal (2) G-P(sol) polarization free energy of solvation -25.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds