Wall clock time and date at job start Mon Mar 30 2020 07:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47571 * 2 1 4 4 H 1.09002 * 109.47060 * 306.51737 * 3 2 1 5 5 C 1.50700 * 109.47150 * 186.52078 * 3 2 1 6 6 H 1.08004 * 120.00014 * 244.78643 * 5 3 2 7 7 C 1.37875 * 120.00074 * 64.78590 * 5 3 2 8 8 N 1.31506 * 120.00157 * 9.38409 * 7 5 3 9 9 Si 1.86808 * 119.99881 * 189.38581 * 7 5 3 10 10 H 1.48501 * 109.46945 * 269.99842 * 9 7 5 11 11 H 1.48503 * 109.46983 * 29.99753 * 9 7 5 12 12 H 1.48501 * 109.46956 * 149.99971 * 9 7 5 13 13 N 1.46902 * 109.47233 * 66.51770 * 3 2 1 14 14 C 1.46900 * 110.99958 * 211.92915 * 13 3 2 15 15 C 1.52998 * 109.47129 * 61.24743 * 14 13 3 16 16 C 1.53003 * 109.47088 * 62.29526 * 15 14 13 17 17 C 1.53000 * 109.46844 * 181.24691 * 14 13 3 18 18 C 1.53003 * 117.50069 * 15.38154 * 17 14 13 19 19 C 1.53002 * 117.49928 * 306.71872 * 17 14 13 20 20 C 1.53000 * 109.46932 * 301.24481 * 14 13 3 21 21 C 1.53001 * 117.49540 * 137.98633 * 20 14 13 22 22 C 1.53001 * 117.49851 * 69.32615 * 20 14 13 23 23 H 1.09001 * 109.47522 * 57.82506 * 1 2 3 24 24 H 1.08995 * 109.47889 * 177.83495 * 1 2 3 25 25 H 1.09006 * 109.46949 * 297.82964 * 1 2 3 26 26 H 1.09002 * 109.46760 * 239.99473 * 2 1 3 27 27 H 1.09005 * 109.47223 * 120.00421 * 2 1 3 28 28 H 0.97003 * 120.00068 * 356.47788 * 8 7 5 29 29 H 1.00903 * 111.00103 * 335.88515 * 13 3 2 30 30 H 1.08998 * 109.46853 * 182.29464 * 15 14 13 31 31 H 1.08994 * 109.46850 * 302.29426 * 15 14 13 32 32 H 1.08997 * 109.47264 * 311.83855 * 16 15 14 33 33 H 1.09003 * 109.46855 * 71.83767 * 16 15 14 34 34 H 1.08996 * 109.47155 * 191.83510 * 16 15 14 35 35 H 1.08996 * 115.54860 * 161.04690 * 17 14 13 36 36 H 1.09002 * 117.49925 * 359.97438 * 18 17 14 37 37 H 1.08999 * 117.50300 * 145.01798 * 18 17 14 38 38 H 1.08993 * 117.49922 * 214.97696 * 19 17 14 39 39 H 1.08999 * 117.49815 * 359.97438 * 19 17 14 40 40 H 1.08999 * 115.55215 * 283.65288 * 20 14 13 41 41 H 1.09005 * 117.49714 * 359.97438 * 21 20 14 42 42 H 1.09000 * 117.49773 * 145.02117 * 21 20 14 43 43 H 1.08997 * 117.49899 * 214.97179 * 22 20 14 44 44 H 1.09001 * 117.49748 * 359.97423 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5847 1.9888 -0.8259 5 6 3.5384 1.4454 -0.1614 6 1 4.1668 1.8125 0.6367 7 6 4.1071 0.9793 -1.3277 8 7 3.3478 0.7061 -2.3661 9 14 5.9563 0.7359 -1.4329 10 1 6.5936 1.9876 -1.9149 11 1 6.4880 0.3955 -0.0888 12 1 6.2571 -0.3687 -2.3787 13 7 1.6830 2.0881 1.2703 14 6 1.4395 3.5243 1.0806 15 6 0.2694 3.7200 0.1145 16 6 -0.9980 3.1120 0.7188 17 6 1.1017 4.1665 2.4276 18 6 1.4229 3.3668 3.6919 19 6 -0.0307 3.5407 3.2444 20 6 2.6940 4.1822 0.5023 21 6 2.5010 5.2160 -0.6090 22 6 3.0734 3.8350 -0.9387 23 1 -0.3634 0.5472 -0.8698 24 1 -0.3635 -1.0268 -0.0388 25 1 -0.3633 0.4798 0.9089 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.3834 0.7835 -2.2955 29 1 0.8844 1.6386 1.6925 30 1 0.1149 4.7851 -0.0579 31 1 0.4933 3.2274 -0.8316 32 1 -0.7809 2.1084 1.0843 33 1 -1.3404 3.7338 1.5460 34 1 -1.7755 3.0610 -0.0434 35 1 1.2169 5.2493 2.4742 36 1 1.8745 2.3831 3.5640 37 1 1.7490 3.9236 4.5704 38 1 -0.6601 4.2118 3.8286 39 1 -0.5352 2.6717 2.8219 40 1 3.5058 4.3497 1.2101 41 1 1.4804 5.4270 -0.9284 42 1 3.1862 6.0633 -0.6326 43 1 4.1348 3.7746 -1.1790 44 1 2.4295 3.1376 -1.4745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704667859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:43 Heat of formation + Delta-G solvation = 53.927930 kcal Electronic energy + Delta-G solvation = -20993.356402 eV Core-core repulsion = 18333.506500 eV Total energy + Delta-G solvation = -2659.849903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37357 -37.56842 -36.77212 -34.40207 -32.97502 -31.79874 -28.44250 -26.97921 -25.01867 -23.69971 -23.15608 -22.92706 -21.94348 -21.44500 -19.34637 -18.47690 -17.09848 -16.60484 -16.14343 -15.78891 -15.62238 -15.59934 -15.15899 -14.33765 -14.08673 -13.96054 -13.64443 -13.38780 -13.08071 -12.81113 -12.61417 -12.38241 -12.29986 -12.12352 -12.00365 -11.94981 -11.89491 -11.66921 -11.38916 -11.26208 -11.02841 -10.79044 -10.68537 -10.43246 -10.27341 -10.16875 -8.81061 -8.26766 -5.91813 1.54181 1.60468 1.77190 2.64622 3.03554 3.16751 3.41709 3.73772 3.86939 4.01825 4.09498 4.19216 4.30966 4.34735 4.37268 4.42069 4.45342 4.51825 4.55468 4.57831 4.76020 4.84663 4.86543 4.94195 4.96427 5.10881 5.12541 5.16502 5.18091 5.24472 5.34613 5.39657 5.41387 5.42868 5.49363 5.55089 5.58954 5.67401 5.75456 6.27446 6.41235 6.78260 6.85483 7.15658 7.73248 9.04606 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021651 B = 0.009424 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.906342 B = 2970.464340 C = 3357.255069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.206 3.794 4 H 0.004 0.996 5 C -0.535 4.535 6 H 0.031 0.969 7 C -0.023 4.023 8 N -0.943 5.943 9 Si 1.091 2.909 10 H -0.285 1.285 11 H -0.282 1.282 12 H -0.291 1.291 13 N -0.668 5.668 14 C 0.186 3.814 15 C -0.149 4.149 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.175 4.175 19 C -0.174 4.174 20 C -0.118 4.118 21 C -0.197 4.197 22 C -0.126 4.126 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.324 0.676 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 6.628 8.355 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.098 3.902 4 H 0.021 0.979 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.221 4.221 8 N -0.583 5.583 9 Si 0.918 3.082 10 H -0.211 1.211 11 H -0.208 1.208 12 H -0.218 1.218 13 N -0.300 5.300 14 C 0.094 3.906 15 C -0.188 4.188 16 C -0.215 4.215 17 C -0.162 4.162 18 C -0.212 4.212 19 C -0.211 4.211 20 C -0.137 4.137 21 C -0.235 4.235 22 C -0.163 4.163 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.174 6.249 7.554 11.586 hybrid contribution -1.497 0.104 0.157 1.509 sum -7.671 6.353 7.711 12.596 Atomic orbital electron populations 1.21897 0.95847 1.01318 1.00918 1.21807 0.94831 1.00332 0.99967 1.19374 0.94550 0.89138 0.87119 0.97882 1.21942 0.92410 1.41139 1.01963 0.95015 1.26335 1.08378 0.95031 0.92392 1.70872 1.06225 1.50253 1.30936 0.83232 0.72811 0.76671 0.75478 1.21118 1.20796 1.21751 1.60710 1.41063 1.01579 1.26681 1.19649 0.90719 0.88022 0.92187 1.22238 0.96327 1.01220 0.98980 1.22262 0.96566 1.01078 1.01544 1.22180 1.04669 0.98281 0.91093 1.22945 0.98857 1.02263 0.97135 1.23284 0.91259 1.03494 1.03027 1.21844 0.98762 1.01821 0.91235 1.23427 1.02331 0.93491 1.04203 1.22538 0.99452 0.95481 0.98864 0.94122 0.92452 0.91791 0.94301 0.94009 0.93093 0.85498 0.90995 0.94261 0.92666 0.89957 0.93068 0.87498 0.89256 0.88637 0.87291 0.88501 0.90336 0.88361 0.88794 0.92530 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.29 71.98 0.67 -4.29 16 2 C -0.13 -5.76 5.13 30.59 0.16 -5.60 16 3 C 0.21 9.41 0.89 44.17 0.04 9.45 16 4 H 0.00 0.20 2.85 -2.39 -0.01 0.19 16 5 C -0.54 -28.11 4.93 25.60 0.13 -27.98 16 6 H 0.03 1.78 7.74 -2.91 -0.02 1.75 16 7 C -0.02 -1.27 4.40 84.66 0.37 -0.90 16 8 N -0.94 -54.61 13.01 21.45 0.28 -54.33 16 9 Si 1.09 51.30 29.91 68.60 2.05 53.35 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 N -0.67 -25.84 4.48 -452.10 -2.03 -27.86 16 14 C 0.19 6.34 0.63 3.53 0.00 6.34 16 15 C -0.15 -4.75 3.66 30.59 0.11 -4.64 16 16 C -0.16 -4.16 8.12 71.98 0.58 -3.57 16 17 C -0.14 -4.05 4.97 -10.79 -0.05 -4.10 16 18 C -0.17 -4.75 9.79 30.62 0.30 -4.45 16 19 C -0.17 -4.03 7.48 30.62 0.23 -3.80 16 20 C -0.12 -4.53 4.53 -10.79 -0.05 -4.58 16 21 C -0.20 -6.81 9.71 30.62 0.30 -6.51 16 22 C -0.13 -5.54 6.13 30.62 0.19 -5.36 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.96 4.66 -2.38 -0.01 1.95 16 26 H 0.04 1.95 6.30 -2.39 -0.02 1.94 16 27 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.26 15.02 6.05 -92.71 -0.56 14.46 16 29 H 0.32 11.45 3.74 -89.69 -0.34 11.11 16 30 H 0.07 2.11 6.40 -2.39 -0.02 2.10 16 31 H 0.04 1.51 5.21 -2.39 -0.01 1.50 16 32 H 0.05 1.51 2.83 -2.39 -0.01 1.50 16 33 H 0.08 1.84 5.73 -2.39 -0.01 1.83 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.09 2.87 6.97 -2.39 -0.02 2.86 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.28 4.80 -2.39 -0.01 2.27 16 40 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.10 3.12 5.84 -2.38 -0.01 3.11 16 42 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.06 2.72 7.86 -2.39 -0.02 2.70 16 44 H 0.08 4.02 4.47 -2.39 -0.01 4.01 16 Total: -1.00 -57.72 303.10 4.15 -53.57 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.87 Total: 35.29 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 2.97 Total: -60.01 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.75 Total: -82.20 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -57.72 4.15 -53.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704667859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.495 kcal (2) G-P(sol) polarization free energy of solvation -57.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds