Wall clock time and date at job start Mon Mar 30 2020 07:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 H 1.08999 * 109.47380 * 58.83292 * 3 2 1 5 5 C 1.50701 * 109.47399 * 178.83266 * 3 2 1 6 6 H 1.08007 * 120.00039 * 122.28033 * 5 3 2 7 7 C 1.37876 * 119.99838 * 302.28118 * 5 3 2 8 8 N 1.31511 * 120.00400 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46904 * 90.00173 * 9 7 5 11 11 H 1.48502 * 109.47672 * 210.00095 * 9 7 5 12 12 H 1.48499 * 109.47303 * 330.00719 * 9 7 5 13 13 N 1.46900 * 109.47515 * 298.83638 * 3 2 1 14 14 C 1.46898 * 111.00453 * 160.28947 * 13 3 2 15 15 C 1.52999 * 109.47486 * 66.72370 * 14 13 3 16 16 C 1.52996 * 109.46915 * 53.41946 * 15 14 13 17 17 C 1.53000 * 109.47056 * 186.72794 * 14 13 3 18 18 C 1.53003 * 117.51471 * 231.71962 * 17 14 13 19 19 C 1.52992 * 117.49829 * 300.34604 * 17 14 13 20 20 C 1.53002 * 109.46653 * 306.72401 * 14 13 3 21 21 C 1.53002 * 117.49892 * 140.60679 * 20 14 13 22 22 C 1.53006 * 117.49832 * 71.94806 * 20 14 13 23 23 H 1.08998 * 109.47036 * 305.01259 * 1 2 3 24 24 H 1.09001 * 109.46894 * 65.00493 * 1 2 3 25 25 H 1.08993 * 109.47231 * 185.00907 * 1 2 3 26 26 H 1.09004 * 109.46954 * 239.99974 * 2 1 3 27 27 H 1.08997 * 109.47129 * 120.00422 * 2 1 3 28 28 H 0.97004 * 120.00570 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99425 * 284.24092 * 13 3 2 30 30 H 1.08993 * 109.47235 * 173.42090 * 15 14 13 31 31 H 1.09005 * 109.46926 * 293.41907 * 15 14 13 32 32 H 1.09003 * 109.47354 * 312.37718 * 16 15 14 33 33 H 1.08999 * 109.46957 * 72.37847 * 16 15 14 34 34 H 1.09004 * 109.47030 * 192.37901 * 16 15 14 35 35 H 1.08995 * 115.55053 * 86.01904 * 17 14 13 36 36 H 1.08995 * 117.49613 * 214.97115 * 18 17 14 37 37 H 1.09000 * 117.49673 * 359.97438 * 18 17 14 38 38 H 1.09004 * 117.50371 * 359.97438 * 19 17 14 39 39 H 1.09003 * 117.50398 * 144.97673 * 19 17 14 40 40 H 1.09005 * 115.55139 * 286.27766 * 20 14 13 41 41 H 1.09000 * 117.49654 * 0.02562 * 21 20 14 42 42 H 1.08998 * 117.50292 * 145.01863 * 21 20 14 43 43 H 1.09001 * 117.49395 * 214.97646 * 22 20 14 44 44 H 1.08996 * 117.50020 * 359.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6598 1.9623 0.8793 5 6 3.5468 1.4425 0.0289 6 1 4.1019 1.9367 -0.7547 7 6 4.2165 0.8117 1.0558 8 7 3.5406 0.2095 2.0098 9 14 6.0842 0.8112 1.0913 10 1 6.5653 2.0000 1.8401 11 1 6.5664 -0.4237 1.7605 12 1 6.6058 0.8571 -0.2983 13 7 1.5735 2.1268 -1.2132 14 6 1.6258 3.5856 -1.0480 15 6 3.0841 4.0339 -0.9328 16 6 3.8788 3.4954 -2.1242 17 6 0.9792 4.2596 -2.2597 18 6 1.7824 5.3474 -2.9758 19 6 1.5908 3.9795 -3.6338 20 6 0.8685 3.9824 0.2209 21 6 1.4676 5.0963 1.0819 22 6 1.5165 3.6447 1.5652 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0897 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0118 -0.2346 2.7320 29 1 2.1049 1.8351 -2.0199 30 1 3.1301 5.1228 -0.9277 31 1 3.5109 3.6479 -0.0070 32 1 3.6569 2.4370 -2.2604 33 1 3.6006 4.0438 -3.0241 34 1 4.9451 3.6219 -1.9367 35 1 -0.1022 4.3853 -2.2063 36 1 1.2293 6.1886 -3.3934 37 1 2.7715 5.5832 -2.5833 38 1 2.4541 3.3154 -3.6746 39 1 0.9118 3.9205 -4.4845 40 1 -0.2181 3.9247 0.1573 41 1 2.4010 5.5467 0.7442 42 1 0.7752 5.7712 1.5851 43 1 0.8561 3.3651 2.3860 44 1 2.4821 3.1394 1.5456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704667881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:47 Heat of formation + Delta-G solvation = 84.010125 kcal Electronic energy + Delta-G solvation = -20922.114017 eV Core-core repulsion = 18263.568576 eV Total energy + Delta-G solvation = -2658.545441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04062 -36.32009 -34.83732 -32.19868 -31.55168 -29.72326 -27.38908 -25.18973 -22.96779 -22.33002 -21.98084 -21.49856 -20.63533 -19.15491 -17.69740 -16.63933 -16.12153 -14.95583 -14.58794 -14.49859 -13.89100 -13.36101 -13.05555 -12.78123 -12.49769 -12.24293 -11.90963 -11.54197 -11.27296 -11.14064 -10.93578 -10.89376 -10.88327 -10.54705 -10.35765 -10.20126 -10.13825 -9.97278 -9.70443 -9.62636 -9.48778 -9.40740 -9.18887 -8.95360 -8.55144 -8.07201 -7.07432 -5.91982 -4.02043 3.26702 3.35299 3.37648 4.22666 4.42686 4.55018 5.00656 5.27912 5.33197 5.37307 5.57028 5.68965 5.71038 5.74420 5.85268 5.86226 5.95881 6.10082 6.17336 6.24918 6.30144 6.34005 6.46479 6.48032 6.55626 6.59249 6.64266 6.75880 6.77533 6.81685 6.91433 7.00731 7.11041 7.26609 7.35060 7.37557 7.57439 7.79136 7.90845 8.24505 8.31367 8.48481 8.83055 9.11669 9.62992 11.05797 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.009848 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.116679 B = 2842.632297 C = 3180.887407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 C 0.183 3.817 4 H 0.077 0.923 5 C -0.550 4.550 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.876 3.124 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.187 3.813 15 C -0.156 4.156 16 C -0.174 4.174 17 C -0.119 4.119 18 C -0.194 4.194 19 C -0.193 4.193 20 C -0.125 4.125 21 C -0.198 4.198 22 C -0.168 4.168 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.019 0.981 26 H 0.023 0.977 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.325 0.675 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 7.407 -5.413 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C 0.075 3.925 4 H 0.094 0.906 5 C -0.589 4.589 6 H 0.093 0.907 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.704 3.296 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.305 5.305 14 C 0.096 3.904 15 C -0.194 4.194 16 C -0.230 4.230 17 C -0.138 4.138 18 C -0.232 4.232 19 C -0.230 4.230 20 C -0.143 4.143 21 C -0.236 4.236 22 C -0.204 4.204 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.059 7.218 -5.072 9.711 hybrid contribution 2.013 0.051 0.017 2.014 sum -2.046 7.268 -5.055 9.086 Atomic orbital electron populations 1.21668 0.99285 0.97804 1.00380 1.21550 0.91777 0.99842 1.01620 1.19935 0.92069 0.90977 0.89477 0.90601 1.22484 0.93250 1.34006 1.09173 0.90706 1.24918 0.97229 0.95315 0.95993 1.69866 1.34595 1.35689 1.12120 0.86856 0.87289 0.77389 0.78028 1.20926 1.21436 1.20155 1.60939 1.59651 1.02326 1.07624 1.19543 0.91518 0.89451 0.89928 1.22576 0.96937 0.98731 1.01199 1.22540 0.99363 1.02508 0.98607 1.22230 0.97966 1.00845 0.92710 1.23224 1.02547 0.92161 1.05226 1.23332 1.04058 0.99373 0.96206 1.22031 0.97991 1.02501 0.91826 1.23131 1.02621 0.92545 1.05269 1.23277 1.05028 0.95859 0.96274 0.94588 0.93508 0.96152 0.95783 0.88982 0.93162 0.85531 0.93561 0.88265 0.90819 0.92063 0.94058 0.88720 0.90052 0.87917 0.87214 0.90071 0.89026 0.89024 0.90369 0.90111 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.70 37.16 0.36 -2.40 16 2 C -0.11 -2.56 5.41 -26.74 -0.14 -2.70 16 3 C 0.18 4.13 1.44 -68.87 -0.10 4.03 16 4 H 0.08 1.80 3.24 -51.93 -0.17 1.63 16 5 C -0.55 -13.39 5.36 -34.44 -0.18 -13.57 16 6 H 0.08 1.78 3.51 -52.48 -0.18 1.59 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.69 11.14 55.43 0.62 -23.07 16 9 Si 0.88 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -13.32 5.24 -94.25 -0.49 -13.81 16 14 C 0.19 3.28 0.65 -131.60 -0.09 3.20 16 15 C -0.16 -2.78 2.56 -26.73 -0.07 -2.85 16 16 C -0.17 -2.97 6.32 37.16 0.23 -2.73 16 17 C -0.12 -1.84 5.36 -90.62 -0.49 -2.33 16 18 C -0.19 -2.66 9.09 -26.73 -0.24 -2.90 16 19 C -0.19 -2.73 8.94 -26.74 -0.24 -2.97 16 20 C -0.12 -2.21 4.88 -90.61 -0.44 -2.66 16 21 C -0.20 -3.24 9.74 -26.69 -0.26 -3.50 16 22 C -0.17 -3.21 7.28 -26.69 -0.19 -3.40 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 2.41 5.86 -51.93 -0.30 2.10 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.33 6.51 5.53 -39.29 -0.22 6.29 16 30 H 0.05 0.77 5.31 -51.93 -0.28 0.49 16 31 H 0.10 2.08 4.25 -51.93 -0.22 1.86 16 32 H 0.07 1.38 4.24 -51.93 -0.22 1.16 16 33 H 0.06 0.92 3.81 -51.93 -0.20 0.72 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.44 4.83 -51.93 -0.25 1.19 16 38 H 0.11 1.62 4.58 -51.93 -0.24 1.38 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.09 1.49 6.09 -51.93 -0.32 1.17 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.13 2.98 4.68 -51.93 -0.24 2.74 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -24.69 302.67 -8.88 -33.57 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -6.60 Total: 16.44 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -1.95 Total: -33.14 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.12 Total: -36.88 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -24.69 -8.88 -33.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704667881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.579 kcal (2) G-P(sol) polarization free energy of solvation -24.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds