Wall clock time and date at job start Mon Mar 30 2020 07:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 H 1.08999 * 109.47380 * 58.83292 * 3 2 1 5 5 C 1.50701 * 109.47399 * 178.83266 * 3 2 1 6 6 H 1.08007 * 120.00039 * 122.28033 * 5 3 2 7 7 C 1.37876 * 119.99838 * 302.28118 * 5 3 2 8 8 N 1.31511 * 120.00400 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99957 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46904 * 90.00173 * 9 7 5 11 11 H 1.48502 * 109.47672 * 210.00095 * 9 7 5 12 12 H 1.48499 * 109.47303 * 330.00719 * 9 7 5 13 13 N 1.46900 * 109.47515 * 298.83638 * 3 2 1 14 14 C 1.46898 * 111.00453 * 160.28947 * 13 3 2 15 15 C 1.52999 * 109.47486 * 66.72370 * 14 13 3 16 16 C 1.52996 * 109.46915 * 53.41946 * 15 14 13 17 17 C 1.53000 * 109.47056 * 186.72794 * 14 13 3 18 18 C 1.53003 * 117.51471 * 231.71962 * 17 14 13 19 19 C 1.52992 * 117.49829 * 300.34604 * 17 14 13 20 20 C 1.53002 * 109.46653 * 306.72401 * 14 13 3 21 21 C 1.53002 * 117.49892 * 140.60679 * 20 14 13 22 22 C 1.53006 * 117.49832 * 71.94806 * 20 14 13 23 23 H 1.08998 * 109.47036 * 305.01259 * 1 2 3 24 24 H 1.09001 * 109.46894 * 65.00493 * 1 2 3 25 25 H 1.08993 * 109.47231 * 185.00907 * 1 2 3 26 26 H 1.09004 * 109.46954 * 239.99974 * 2 1 3 27 27 H 1.08997 * 109.47129 * 120.00422 * 2 1 3 28 28 H 0.97004 * 120.00570 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99425 * 284.24092 * 13 3 2 30 30 H 1.08993 * 109.47235 * 173.42090 * 15 14 13 31 31 H 1.09005 * 109.46926 * 293.41907 * 15 14 13 32 32 H 1.09003 * 109.47354 * 312.37718 * 16 15 14 33 33 H 1.08999 * 109.46957 * 72.37847 * 16 15 14 34 34 H 1.09004 * 109.47030 * 192.37901 * 16 15 14 35 35 H 1.08995 * 115.55053 * 86.01904 * 17 14 13 36 36 H 1.08995 * 117.49613 * 214.97115 * 18 17 14 37 37 H 1.09000 * 117.49673 * 359.97438 * 18 17 14 38 38 H 1.09004 * 117.50371 * 359.97438 * 19 17 14 39 39 H 1.09003 * 117.50398 * 144.97673 * 19 17 14 40 40 H 1.09005 * 115.55139 * 286.27766 * 20 14 13 41 41 H 1.09000 * 117.49654 * 0.02562 * 21 20 14 42 42 H 1.08998 * 117.50292 * 145.01863 * 21 20 14 43 43 H 1.09001 * 117.49395 * 214.97646 * 22 20 14 44 44 H 1.08996 * 117.50020 * 359.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6598 1.9623 0.8793 5 6 3.5468 1.4425 0.0289 6 1 4.1019 1.9367 -0.7547 7 6 4.2165 0.8117 1.0558 8 7 3.5406 0.2095 2.0098 9 14 6.0842 0.8112 1.0913 10 1 6.5653 2.0000 1.8401 11 1 6.5664 -0.4237 1.7605 12 1 6.6058 0.8571 -0.2983 13 7 1.5735 2.1268 -1.2132 14 6 1.6258 3.5856 -1.0480 15 6 3.0841 4.0339 -0.9328 16 6 3.8788 3.4954 -2.1242 17 6 0.9792 4.2596 -2.2597 18 6 1.7824 5.3474 -2.9758 19 6 1.5908 3.9795 -3.6338 20 6 0.8685 3.9824 0.2209 21 6 1.4676 5.0963 1.0819 22 6 1.5165 3.6447 1.5652 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0897 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0118 -0.2346 2.7320 29 1 2.1049 1.8351 -2.0199 30 1 3.1301 5.1228 -0.9277 31 1 3.5109 3.6479 -0.0070 32 1 3.6569 2.4370 -2.2604 33 1 3.6006 4.0438 -3.0241 34 1 4.9451 3.6219 -1.9367 35 1 -0.1022 4.3853 -2.2063 36 1 1.2293 6.1886 -3.3934 37 1 2.7715 5.5832 -2.5833 38 1 2.4541 3.3154 -3.6746 39 1 0.9118 3.9205 -4.4845 40 1 -0.2181 3.9247 0.1573 41 1 2.4010 5.5467 0.7442 42 1 0.7752 5.7712 1.5851 43 1 0.8561 3.3651 2.3860 44 1 2.4821 3.1394 1.5456 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704667881.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:45 Heat of formation + Delta-G solvation = 72.397613 kcal Electronic energy + Delta-G solvation = -20922.617573 eV Core-core repulsion = 18263.568576 eV Total energy + Delta-G solvation = -2659.048997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45201 -37.65006 -36.50914 -33.89494 -33.23133 -31.27345 -29.04732 -26.84424 -24.59897 -23.78373 -23.48954 -22.70522 -21.94263 -20.87469 -19.11924 -18.49089 -17.50077 -16.59256 -16.25390 -15.88146 -15.28726 -15.11247 -14.59511 -14.49830 -13.95422 -13.79532 -13.44480 -13.15649 -13.00459 -12.69740 -12.63768 -12.40706 -12.34164 -12.14359 -11.97870 -11.66466 -11.59347 -11.50208 -11.33098 -11.10798 -10.93210 -10.80411 -10.70884 -10.56191 -10.35837 -9.83941 -8.75250 -7.86118 -6.00762 1.36857 1.42165 1.46676 2.48037 2.99116 3.20593 3.31914 3.71612 4.03628 4.13467 4.27906 4.29984 4.37197 4.44054 4.45273 4.49379 4.66191 4.73430 4.85424 4.87187 4.89259 4.91429 4.97872 5.06082 5.10914 5.17981 5.24310 5.32846 5.44062 5.45034 5.48395 5.55031 5.56240 5.58225 5.60289 5.74246 5.85632 5.88341 6.08328 6.35180 6.46429 6.68260 7.13634 7.26654 7.66162 9.07611 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.009848 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.116679 B = 2842.632297 C = 3180.887407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.540 4.540 6 H 0.080 0.920 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.922 3.078 10 H -0.284 1.284 11 H -0.295 1.295 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.187 3.813 15 C -0.150 4.150 16 C -0.168 4.168 17 C -0.133 4.133 18 C -0.178 4.178 19 C -0.191 4.191 20 C -0.126 4.126 21 C -0.170 4.170 22 C -0.189 4.189 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.252 0.748 29 H 0.324 0.676 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 9.352 -7.071 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.579 4.579 6 H 0.097 0.903 7 C -0.176 4.176 8 N -0.552 5.552 9 Si 0.750 3.250 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.198 1.198 13 N -0.301 5.301 14 C 0.096 3.904 15 C -0.189 4.189 16 C -0.225 4.225 17 C -0.152 4.152 18 C -0.215 4.215 19 C -0.227 4.227 20 C -0.144 4.144 21 C -0.207 4.207 22 C -0.225 4.225 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.143 0.857 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.735 9.175 -6.746 12.333 hybrid contribution 2.211 -0.520 0.507 2.327 sum -2.524 8.655 -6.239 10.964 Atomic orbital electron populations 1.21512 0.96975 0.98719 1.00576 1.21455 0.93832 0.99980 0.99493 1.19781 0.91058 0.90772 0.90586 0.91271 1.22819 0.94516 1.32210 1.08376 0.90260 1.25454 0.99894 0.95934 0.96325 1.69993 1.35322 1.37126 1.12732 0.86123 0.84257 0.76779 0.77793 1.21024 1.22132 1.19837 1.60885 1.59099 1.03863 1.06234 1.19603 0.91558 0.88064 0.91204 1.22453 0.97018 0.99609 0.99775 1.22492 0.98943 1.01594 0.99469 1.22107 0.98264 1.02537 0.92296 1.23265 1.02134 0.92364 1.03738 1.23359 1.03871 0.99633 0.95859 1.22109 0.98186 1.03030 0.91110 1.23160 1.02925 0.91271 1.03368 1.23014 1.03536 0.98455 0.97545 0.95003 0.92613 0.94790 0.96925 0.91997 0.93797 0.85695 0.91869 0.91681 0.92715 0.89442 0.94571 0.88284 0.87887 0.88177 0.88025 0.88474 0.88565 0.88734 0.87865 0.90460 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.70 71.98 0.70 -4.20 16 2 C -0.11 -5.18 5.41 30.59 0.17 -5.01 16 3 C 0.19 8.52 1.44 44.17 0.06 8.58 16 4 H 0.07 3.36 3.24 -2.39 -0.01 3.35 16 5 C -0.54 -26.74 5.36 25.60 0.14 -26.60 16 6 H 0.08 3.79 3.51 -2.91 -0.01 3.78 16 7 C 0.02 1.18 5.29 84.65 0.45 1.63 16 8 N -0.91 -50.59 11.14 21.45 0.24 -50.35 16 9 Si 0.92 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.67 -26.02 5.24 -452.11 -2.37 -28.39 16 14 C 0.19 6.27 0.65 3.53 0.00 6.27 16 15 C -0.15 -5.14 2.56 30.59 0.08 -5.06 16 16 C -0.17 -5.51 6.32 71.98 0.46 -5.05 16 17 C -0.13 -3.72 5.36 -10.79 -0.06 -3.78 16 18 C -0.18 -4.15 9.09 30.59 0.28 -3.87 16 19 C -0.19 -4.75 8.94 30.59 0.27 -4.47 16 20 C -0.13 -4.27 4.88 -10.79 -0.05 -4.33 16 21 C -0.17 -5.21 9.74 30.62 0.30 -4.91 16 22 C -0.19 -7.23 7.28 30.62 0.22 -7.00 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 2.14 7.79 -2.39 -0.02 2.13 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.06 3.34 5.86 -2.39 -0.01 3.33 16 28 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.32 12.73 5.53 -89.69 -0.50 12.23 16 30 H 0.06 1.94 5.31 -2.39 -0.01 1.93 16 31 H 0.06 2.72 4.25 -2.38 -0.01 2.71 16 32 H 0.05 2.01 4.24 -2.39 -0.01 2.00 16 33 H 0.09 2.39 3.81 -2.39 -0.01 2.38 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 2.72 8.11 -2.39 -0.02 2.70 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 2.41 4.83 -2.39 -0.01 2.40 16 38 H 0.10 2.72 4.58 -2.38 -0.01 2.71 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 41 H 0.09 2.85 6.09 -2.39 -0.01 2.83 16 42 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.10 4.49 4.68 -2.39 -0.01 4.48 16 Total: -1.00 -53.43 302.67 3.43 -50.00 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: 0.52 Total: 41.62 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 3.01 Total: -57.81 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -2.13 Total: -78.74 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -53.43 3.43 -50.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704667881.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.396 kcal (2) G-P(sol) polarization free energy of solvation -53.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds