Wall clock time and date at job start Mon Mar 30 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 H 1.09003 * 109.47159 * 300.96805 * 3 2 1 5 5 C 1.50707 * 109.47147 * 180.97247 * 3 2 1 6 6 H 1.08003 * 119.99756 * 239.99854 * 5 3 2 7 7 C 1.37877 * 119.99946 * 59.99499 * 5 3 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99827 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47293 * 60.00175 * 9 7 5 11 11 H 1.48498 * 109.46857 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47224 * 300.00086 * 9 7 5 13 13 N 1.46899 * 109.47458 * 60.97190 * 3 2 1 14 14 C 1.46905 * 110.99923 * 195.68659 * 13 3 2 15 15 C 1.46895 * 110.99856 * 71.73182 * 13 3 2 16 16 H 1.08993 * 110.83827 * 45.45105 * 15 13 3 17 17 C 1.56551 * 110.87165 * 281.64426 * 15 13 3 18 18 C 1.55911 * 105.72812 * 216.51054 * 17 15 13 19 19 C 1.49966 * 104.20834 * 353.54243 * 18 17 15 20 20 H 1.09006 * 108.49239 * 281.16021 * 19 18 17 21 21 C 1.49969 * 126.88807 * 149.14745 * 19 18 17 22 22 C 1.55916 * 104.08088 * 209.62022 * 21 19 18 23 23 C 1.56243 * 105.87240 * 6.58617 * 22 21 19 24 24 C 1.51739 * 110.93863 * 169.16264 * 15 13 3 25 25 H 1.09001 * 111.64136 * 46.26034 * 24 15 13 26 26 H 1.08993 * 109.47105 * 175.15303 * 1 2 3 27 27 H 1.09004 * 109.47070 * 295.16063 * 1 2 3 28 28 H 1.09002 * 109.46437 * 55.15139 * 1 2 3 29 29 H 1.09000 * 109.46960 * 239.99621 * 2 1 3 30 30 H 1.09006 * 109.46624 * 119.99713 * 2 1 3 31 31 H 0.97006 * 120.00061 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46917 * 296.04044 * 14 13 3 33 33 H 1.08993 * 109.47258 * 56.04590 * 14 13 3 34 34 H 1.09005 * 109.46607 * 176.04746 * 14 13 3 35 35 H 1.09000 * 110.19033 * 97.47731 * 17 15 13 36 36 H 1.09005 * 110.28000 * 335.59365 * 17 15 13 37 37 H 1.09004 * 110.50892 * 234.81613 * 18 17 15 38 38 H 1.09001 * 110.50213 * 112.26123 * 18 17 15 39 39 H 1.08997 * 110.50561 * 328.27395 * 21 19 18 40 40 H 1.09008 * 110.50694 * 90.97268 * 21 19 18 41 41 H 1.09000 * 110.16901 * 125.68144 * 22 21 19 42 42 H 1.08998 * 110.17208 * 247.47724 * 22 21 19 43 43 H 1.09003 * 110.94338 * 143.40466 * 23 22 21 44 44 H 1.09002 * 110.93943 * 267.05696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6626 1.9613 -0.8812 5 6 3.5469 1.4425 -0.0241 6 1 4.0998 1.9057 0.7798 7 6 4.2196 0.8513 -1.0724 8 7 3.5463 0.2878 -2.0515 9 14 6.0874 0.8508 -1.1019 10 1 6.6012 0.1436 0.0985 11 1 6.5628 0.1582 -2.3264 12 1 6.5829 2.2507 -1.1016 13 7 1.5697 2.1282 1.2110 14 6 1.7118 3.5845 1.0801 15 6 2.2740 1.6354 2.4021 16 1 3.3459 1.5653 2.2174 17 6 1.6918 0.2577 2.8643 18 6 1.7373 0.2809 4.4226 19 6 2.4683 1.5486 4.7506 20 1 3.5360 1.3777 4.6128 21 6 2.2769 2.4101 5.9632 22 6 2.6342 3.8451 5.4692 23 6 2.8498 3.7247 3.9264 24 6 1.9875 2.5157 3.6045 25 1 0.9243 2.7381 3.6955 26 1 -0.3633 -1.0239 -0.0868 27 1 -0.3633 0.4369 0.9302 28 1 -0.3632 0.5873 -0.8434 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.0196 -0.1279 -2.7892 32 1 2.7677 3.8401 0.9925 33 1 1.1810 3.9228 0.1903 34 1 1.2920 4.0710 1.9606 35 1 2.3063 -0.5576 2.4824 36 1 0.6635 0.1474 2.5198 37 1 2.2827 -0.5835 4.8016 38 1 0.7281 0.3047 4.8337 39 1 1.2414 2.3692 6.3010 40 1 2.9525 2.1016 6.7612 41 1 1.8140 4.5308 5.6817 42 1 3.5487 4.1915 5.9507 43 1 2.4774 4.6098 3.4107 44 1 3.9003 3.5528 3.6921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707930456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:05 Heat of formation + Delta-G solvation = 0.559932 kcal Electronic energy + Delta-G solvation = -20459.039083 eV Core-core repulsion = 17796.874970 eV Total energy + Delta-G solvation = -2662.164113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00849 -36.64236 -33.28673 -32.60510 -31.26392 -28.96641 -26.86095 -26.22545 -25.68526 -23.61949 -22.12161 -20.32070 -19.64810 -19.47425 -18.60394 -16.31991 -15.42913 -15.04454 -14.41133 -14.31091 -14.27064 -13.52260 -13.09325 -12.72701 -12.47349 -12.41182 -12.16003 -11.76716 -11.62454 -11.49351 -11.10774 -10.93832 -10.89938 -10.79434 -10.69178 -10.39266 -10.37070 -10.15415 -9.99651 -9.90294 -9.59742 -9.55292 -9.35713 -9.29372 -8.85556 -8.29327 -6.98603 -5.94615 -4.07098 3.28710 3.34106 3.36532 4.41804 4.48894 4.89845 4.99908 5.22069 5.30251 5.46127 5.47822 5.56621 5.77399 5.81445 5.93337 6.01633 6.03911 6.06215 6.14041 6.19495 6.30573 6.32634 6.42453 6.46194 6.49292 6.53515 6.54780 6.64716 6.73691 6.75474 6.79444 6.87208 6.93142 7.13669 7.24661 7.25488 7.48123 7.71111 7.84776 8.08132 8.24466 8.40840 8.59054 9.04099 9.59579 11.04615 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.008088 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.704055 B = 3461.186333 C = 3940.891359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.533 5.533 14 C 0.037 3.963 15 C 0.096 3.904 16 H 0.068 0.932 17 C -0.109 4.109 18 C -0.105 4.105 19 C -0.117 4.117 20 H 0.062 0.938 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.099 4.099 25 H 0.080 0.920 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.260 0.740 32 H 0.022 0.978 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 3.115 11.877 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.256 5.256 14 C -0.112 4.112 15 C -0.013 4.013 16 H 0.086 0.914 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.136 4.136 20 H 0.081 0.919 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.118 4.118 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.790 2.913 11.733 12.669 hybrid contribution 2.055 0.161 -0.275 2.079 sum -1.735 3.074 11.458 11.990 Atomic orbital electron populations 1.21744 0.99161 0.98080 1.00480 1.21790 0.91984 0.99398 1.02567 1.19250 0.92256 0.91080 0.86699 0.94937 1.21700 0.92778 1.36777 1.06646 0.92490 1.24894 0.97759 0.95204 0.95514 1.69875 1.35005 1.37344 1.10168 0.86799 0.86559 0.78121 0.77368 1.20357 1.21277 1.20463 1.62527 1.55633 1.03247 1.04227 1.22194 0.99128 0.90215 0.99682 1.22087 0.97860 0.92850 0.88470 0.91406 1.23170 1.02019 0.97556 0.91941 1.21479 0.99389 0.96060 0.97405 1.21570 1.00673 0.95594 0.95745 0.91922 1.21413 1.00892 0.94854 0.96926 1.22929 1.00605 0.96459 0.96062 1.22130 0.99942 0.98390 0.94683 1.22539 0.99402 0.94126 0.95746 0.90210 0.95856 0.93252 0.94527 0.89556 0.93430 0.92946 0.95916 0.93215 0.93311 0.91687 0.90699 0.92669 0.92483 0.92117 0.92490 0.92137 0.92426 0.91801 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.37 37.16 0.35 -2.45 16 2 C -0.12 -2.80 4.70 -26.73 -0.13 -2.92 16 3 C 0.21 5.22 1.72 -68.86 -0.12 5.10 16 4 H 0.03 0.90 7.90 -51.93 -0.41 0.49 16 5 C -0.54 -14.29 7.14 -34.44 -0.25 -14.54 16 6 H 0.06 1.52 5.86 -52.48 -0.31 1.21 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -24.93 11.31 55.43 0.63 -24.31 16 9 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.53 -11.09 3.98 -226.77 -0.90 -11.99 16 14 C 0.04 0.71 8.27 60.07 0.50 1.20 16 15 C 0.10 1.84 2.02 -66.44 -0.13 1.70 16 16 H 0.07 1.51 5.47 -51.93 -0.28 1.22 16 17 C -0.11 -1.93 4.65 -23.26 -0.11 -2.04 16 18 C -0.11 -1.54 6.72 -26.68 -0.18 -1.72 16 19 C -0.12 -1.68 2.53 -91.19 -0.23 -1.91 16 20 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 21 C -0.10 -1.25 6.70 -26.68 -0.18 -1.43 16 22 C -0.12 -1.47 6.92 -23.43 -0.16 -1.64 16 23 C -0.11 -1.64 5.90 -25.52 -0.15 -1.79 16 24 C -0.10 -1.57 1.20 -89.35 -0.11 -1.68 16 25 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.96 6.23 -51.93 -0.32 0.64 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 2.29 6.05 -51.93 -0.31 1.97 16 30 H 0.05 1.09 4.46 -51.93 -0.23 0.86 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.02 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 34 H 0.05 0.82 5.55 -51.93 -0.29 0.53 16 35 H 0.06 1.24 6.58 -51.93 -0.34 0.90 16 36 H 0.07 1.36 5.89 -51.93 -0.31 1.05 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.90 6.79 -51.93 -0.35 0.55 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -26.67 313.37 -9.31 -35.98 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.74 Total: 1.80 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.99 Total: -22.34 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.28 Total: -36.30 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.67 -9.31 -35.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.538 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds