Wall clock time and date at job start Mon Mar 30 2020 07:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 H 1.09003 * 109.47159 * 300.96805 * 3 2 1 5 5 C 1.50707 * 109.47147 * 180.97247 * 3 2 1 6 6 H 1.08003 * 119.99756 * 239.99854 * 5 3 2 7 7 C 1.37877 * 119.99946 * 59.99499 * 5 3 2 8 8 N 1.31509 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99827 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47293 * 60.00175 * 9 7 5 11 11 H 1.48498 * 109.46857 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47224 * 300.00086 * 9 7 5 13 13 N 1.46899 * 109.47458 * 60.97190 * 3 2 1 14 14 C 1.46905 * 110.99923 * 195.68659 * 13 3 2 15 15 C 1.46895 * 110.99856 * 71.73182 * 13 3 2 16 16 H 1.08993 * 110.83827 * 45.45105 * 15 13 3 17 17 C 1.56551 * 110.87165 * 281.64426 * 15 13 3 18 18 C 1.55911 * 105.72812 * 216.51054 * 17 15 13 19 19 C 1.49966 * 104.20834 * 353.54243 * 18 17 15 20 20 H 1.09006 * 108.49239 * 281.16021 * 19 18 17 21 21 C 1.49969 * 126.88807 * 149.14745 * 19 18 17 22 22 C 1.55916 * 104.08088 * 209.62022 * 21 19 18 23 23 C 1.56243 * 105.87240 * 6.58617 * 22 21 19 24 24 C 1.51739 * 110.93863 * 169.16264 * 15 13 3 25 25 H 1.09001 * 111.64136 * 46.26034 * 24 15 13 26 26 H 1.08993 * 109.47105 * 175.15303 * 1 2 3 27 27 H 1.09004 * 109.47070 * 295.16063 * 1 2 3 28 28 H 1.09002 * 109.46437 * 55.15139 * 1 2 3 29 29 H 1.09000 * 109.46960 * 239.99621 * 2 1 3 30 30 H 1.09006 * 109.46624 * 119.99713 * 2 1 3 31 31 H 0.97006 * 120.00061 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46917 * 296.04044 * 14 13 3 33 33 H 1.08993 * 109.47258 * 56.04590 * 14 13 3 34 34 H 1.09005 * 109.46607 * 176.04746 * 14 13 3 35 35 H 1.09000 * 110.19033 * 97.47731 * 17 15 13 36 36 H 1.09005 * 110.28000 * 335.59365 * 17 15 13 37 37 H 1.09004 * 110.50892 * 234.81613 * 18 17 15 38 38 H 1.09001 * 110.50213 * 112.26123 * 18 17 15 39 39 H 1.08997 * 110.50561 * 328.27395 * 21 19 18 40 40 H 1.09008 * 110.50694 * 90.97268 * 21 19 18 41 41 H 1.09000 * 110.16901 * 125.68144 * 22 21 19 42 42 H 1.08998 * 110.17208 * 247.47724 * 22 21 19 43 43 H 1.09003 * 110.94338 * 143.40466 * 23 22 21 44 44 H 1.09002 * 110.93943 * 267.05696 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6626 1.9613 -0.8812 5 6 3.5469 1.4425 -0.0241 6 1 4.0998 1.9057 0.7798 7 6 4.2196 0.8513 -1.0724 8 7 3.5463 0.2878 -2.0515 9 14 6.0874 0.8508 -1.1019 10 1 6.6012 0.1436 0.0985 11 1 6.5628 0.1582 -2.3264 12 1 6.5829 2.2507 -1.1016 13 7 1.5697 2.1282 1.2110 14 6 1.7118 3.5845 1.0801 15 6 2.2740 1.6354 2.4021 16 1 3.3459 1.5653 2.2174 17 6 1.6918 0.2577 2.8643 18 6 1.7373 0.2809 4.4226 19 6 2.4683 1.5486 4.7506 20 1 3.5360 1.3777 4.6128 21 6 2.2769 2.4101 5.9632 22 6 2.6342 3.8451 5.4692 23 6 2.8498 3.7247 3.9264 24 6 1.9875 2.5157 3.6045 25 1 0.9243 2.7381 3.6955 26 1 -0.3633 -1.0239 -0.0868 27 1 -0.3633 0.4369 0.9302 28 1 -0.3632 0.5873 -0.8434 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 4.0196 -0.1279 -2.7892 32 1 2.7677 3.8401 0.9925 33 1 1.1810 3.9228 0.1903 34 1 1.2920 4.0710 1.9606 35 1 2.3063 -0.5576 2.4824 36 1 0.6635 0.1474 2.5198 37 1 2.2827 -0.5835 4.8016 38 1 0.7281 0.3047 4.8337 39 1 1.2414 2.3692 6.3010 40 1 2.9525 2.1016 6.7612 41 1 1.8140 4.5308 5.6817 42 1 3.5487 4.1915 5.9507 43 1 2.4774 4.6098 3.4107 44 1 3.9003 3.5528 3.6921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707930456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:05 Heat of formation + Delta-G solvation = -12.867261 kcal Electronic energy + Delta-G solvation = -20459.621329 eV Core-core repulsion = 17796.874970 eV Total energy + Delta-G solvation = -2662.746359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33072 -38.27927 -34.82674 -34.23944 -33.12699 -30.25523 -28.70009 -27.56621 -27.03850 -25.42233 -23.77623 -21.52718 -21.25105 -20.87055 -20.12906 -18.22175 -16.90277 -16.74161 -16.03164 -15.67844 -15.48912 -15.20162 -14.80052 -14.13043 -14.05741 -13.89410 -13.53873 -13.39352 -13.20501 -13.05193 -12.89927 -12.70571 -12.56947 -12.16916 -12.04161 -11.97569 -11.72725 -11.62868 -11.42870 -11.33769 -11.24100 -11.10400 -10.96813 -10.78367 -10.62677 -10.33482 -8.81401 -8.01207 -6.23057 1.34774 1.35573 1.42641 2.38813 3.15967 3.30837 3.50325 3.85647 3.99411 4.28172 4.31019 4.36207 4.51293 4.62314 4.69034 4.70084 4.77414 4.78379 4.81869 4.84874 4.88780 4.95704 4.98563 4.99932 5.09694 5.15380 5.22847 5.24519 5.30038 5.36152 5.37881 5.42958 5.48250 5.54765 5.60705 5.64131 5.70991 5.76300 5.89776 6.15187 6.26927 6.44684 6.79604 7.01454 7.46901 8.93080 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.008088 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.704055 B = 3461.186333 C = 3940.891359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.221 3.779 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.041 3.959 15 C 0.093 3.907 16 H 0.031 0.969 17 C -0.108 4.108 18 C -0.097 4.097 19 C -0.108 4.108 20 H 0.044 0.956 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.117 4.117 24 C -0.098 4.098 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.260 0.740 32 H 0.004 0.996 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 3.582 14.433 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.113 3.887 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.108 4.108 15 C -0.016 4.016 16 H 0.049 0.951 17 C -0.146 4.146 18 C -0.135 4.135 19 C -0.127 4.127 20 H 0.063 0.937 21 C -0.136 4.136 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.117 4.117 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.347 3.387 14.303 15.328 hybrid contribution 2.231 0.031 -1.094 2.485 sum -2.115 3.419 13.209 13.807 Atomic orbital electron populations 1.21600 0.96561 0.99310 1.00720 1.21630 0.94256 0.98273 1.01009 1.19014 0.91109 0.91620 0.86944 0.98757 1.21950 0.94117 1.36173 1.06251 0.93215 1.25581 1.01688 0.95196 0.95395 1.70010 1.36337 1.38104 1.10624 0.85892 0.81934 0.78089 0.77423 1.19970 1.20830 1.20201 1.62514 1.55327 1.03828 1.03484 1.22218 0.98084 0.89566 1.00938 1.22077 0.95527 0.94992 0.88966 0.95100 1.23099 1.01035 0.95782 0.94660 1.21408 1.00829 0.96681 0.94553 1.21571 0.99445 0.95230 0.96441 0.93695 1.21418 1.02245 0.93936 0.95975 1.22890 1.01870 0.96902 0.93607 1.22132 0.98592 0.97687 0.97068 1.22469 0.99893 0.94961 0.94360 0.89645 0.93921 0.92037 0.95323 0.92859 0.93163 0.93069 0.97776 0.93677 0.90249 0.93910 0.90943 0.91644 0.90471 0.90636 0.91058 0.90501 0.91322 0.91628 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.37 71.98 0.67 -4.36 16 2 C -0.11 -5.46 4.70 30.59 0.14 -5.31 16 3 C 0.22 11.15 1.72 44.17 0.08 11.23 16 4 H -0.01 -0.32 7.90 -2.39 -0.02 -0.34 16 5 C -0.55 -29.93 7.14 25.60 0.18 -29.75 16 6 H 0.05 2.76 5.86 -2.91 -0.02 2.74 16 7 C 0.02 1.17 5.30 84.66 0.45 1.62 16 8 N -0.91 -52.99 11.31 21.45 0.24 -52.75 16 9 Si 0.94 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.53 -22.24 3.98 -871.37 -3.47 -25.70 16 14 C 0.04 1.57 8.27 127.69 1.06 2.63 16 15 C 0.09 3.56 2.02 45.74 0.09 3.66 16 16 H 0.03 1.43 5.47 -2.39 -0.01 1.41 16 17 C -0.11 -3.75 4.65 32.84 0.15 -3.60 16 18 C -0.10 -2.60 6.72 30.63 0.21 -2.39 16 19 C -0.11 -2.85 2.53 -11.16 -0.03 -2.88 16 20 H 0.04 1.34 8.00 -2.38 -0.02 1.32 16 21 C -0.10 -2.00 6.70 30.63 0.21 -1.80 16 22 C -0.12 -2.36 6.92 32.73 0.23 -2.13 16 23 C -0.12 -3.17 5.90 31.38 0.19 -2.99 16 24 C -0.10 -2.94 1.20 -9.97 -0.01 -2.95 16 25 H 0.09 2.52 8.02 -2.39 -0.02 2.50 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 2.32 6.23 -2.38 -0.01 2.30 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 2.93 6.05 -2.39 -0.01 2.91 16 30 H 0.05 2.36 4.46 -2.38 -0.01 2.35 16 31 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 32 H 0.00 0.15 7.66 -2.39 -0.02 0.14 16 33 H 0.04 1.76 8.00 -2.39 -0.02 1.74 16 34 H 0.08 2.56 5.55 -2.38 -0.01 2.55 16 35 H 0.04 1.65 6.58 -2.39 -0.02 1.63 16 36 H 0.07 2.54 5.89 -2.38 -0.01 2.52 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.72 6.79 -2.39 -0.02 1.71 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -58.99 313.37 3.36 -55.63 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.95 Total: 15.45 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 3.61 Total: -39.03 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -3.23 Total: -78.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -58.99 3.36 -55.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.762 kcal (2) G-P(sol) polarization free energy of solvation -58.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds