Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 H 1.08997 * 109.47386 * 171.91056 * 3 2 1 5 5 C 1.50709 * 109.47137 * 51.91263 * 3 2 1 6 6 H 1.08002 * 119.99664 * 276.04654 * 5 3 2 7 7 C 1.37866 * 120.00072 * 96.04720 * 5 3 2 8 8 N 1.31515 * 119.99983 * 196.02393 * 7 5 3 9 9 Si 1.86807 * 119.99962 * 15.74326 * 7 5 3 10 10 H 1.48497 * 109.47190 * 84.68614 * 9 7 5 11 11 H 1.48508 * 109.46795 * 204.68483 * 9 7 5 12 12 H 1.48497 * 109.46886 * 324.68298 * 9 7 5 13 13 N 1.46905 * 109.46706 * 291.91454 * 3 2 1 14 14 C 1.46898 * 110.99710 * 184.22978 * 13 3 2 15 15 C 1.46892 * 111.00153 * 308.18130 * 13 3 2 16 16 H 1.09000 * 110.06918 * 343.64394 * 15 13 3 17 17 C 1.53540 * 110.08805 * 222.11949 * 15 13 3 18 18 C 1.53395 * 107.25564 * 223.39155 * 17 15 13 19 19 C 1.53790 * 107.61831 * 0.95729 * 18 17 15 20 20 H 1.09004 * 111.82811 * 253.57199 * 19 18 17 21 21 C 1.54152 * 108.36479 * 129.86178 * 19 18 17 22 22 C 1.56333 * 105.72824 * 248.63916 * 21 19 18 23 23 C 1.54965 * 104.58981 * 22.21646 * 22 21 19 24 24 C 1.53443 * 110.08427 * 105.22205 * 15 13 3 25 25 H 1.09000 * 111.94468 * 268.39403 * 24 15 13 26 26 H 1.08998 * 109.47204 * 307.38176 * 1 2 3 27 27 H 1.09004 * 109.47049 * 67.37847 * 1 2 3 28 28 H 1.08997 * 109.47505 * 187.38122 * 1 2 3 29 29 H 1.08994 * 109.47307 * 239.99444 * 2 1 3 30 30 H 1.09005 * 109.46956 * 119.99837 * 2 1 3 31 31 H 0.97006 * 119.99713 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47520 * 81.06268 * 14 13 3 33 33 H 1.09002 * 109.47514 * 201.06274 * 14 13 3 34 34 H 1.09004 * 109.47440 * 321.06533 * 14 13 3 35 35 H 1.08995 * 109.88498 * 342.80284 * 17 15 13 36 36 H 1.08999 * 109.89006 * 103.82432 * 17 15 13 37 37 H 1.08995 * 109.82612 * 120.47921 * 18 17 15 38 38 H 1.08997 * 109.82124 * 241.34654 * 18 17 15 39 39 H 1.09004 * 109.99808 * 7.82720 * 21 19 18 40 40 H 1.08998 * 110.00039 * 129.16980 * 21 19 18 41 41 H 1.09001 * 110.13475 * 263.50316 * 22 21 19 42 42 H 1.09001 * 110.50007 * 141.11204 * 22 21 19 43 43 H 1.09003 * 110.80038 * 203.75835 * 23 22 21 44 44 H 1.08996 * 110.96451 * 80.34668 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1204 1.4459 0.1446 5 6 1.3812 2.2083 1.1183 6 1 0.4048 2.6459 0.9711 7 6 2.0248 2.3502 2.3293 8 7 1.3497 2.7300 3.3922 9 14 3.8540 1.9955 2.4621 10 1 4.6224 3.2029 2.0661 11 1 4.1876 1.6339 3.8633 12 1 4.2060 0.8676 1.5625 13 7 1.7159 2.0764 -1.2850 14 6 2.2785 3.4312 -1.3603 15 6 2.1767 1.2518 -2.4099 16 1 2.8983 0.5129 -2.0611 17 6 2.8116 2.1399 -3.4895 18 6 2.2967 1.6446 -4.8469 19 6 1.3342 0.4749 -4.5810 20 1 1.7788 -0.4842 -4.8465 21 6 0.0276 0.7352 -5.3565 22 6 -1.0607 1.0182 -4.2703 23 6 -0.2593 1.4692 -3.0230 24 6 0.9835 0.5520 -3.0738 25 1 0.7986 -0.4329 -2.6450 26 1 -0.3633 0.6239 0.8166 27 1 -0.3633 0.3953 -0.9486 28 1 -0.3634 -1.0191 0.1320 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8025 2.8295 4.2443 32 1 3.3321 3.3726 -1.6335 33 1 1.7397 4.0072 -2.1127 34 1 2.1814 3.9195 -0.3906 35 1 2.5155 3.1778 -3.3370 36 1 3.8974 2.0545 -3.4487 37 1 1.7682 2.4493 -5.3579 38 1 3.1330 1.3052 -5.4580 39 1 0.1472 1.6004 -6.0086 40 1 -0.2373 -0.1425 -5.9459 41 1 -1.6212 0.1085 -4.0549 42 1 -1.7316 1.8115 -4.5998 43 1 -0.8315 1.2955 -2.1117 44 1 0.0295 2.5172 -3.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707930458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = 2.338346 kcal Electronic energy + Delta-G solvation = -20586.781304 eV Core-core repulsion = 17924.694310 eV Total energy + Delta-G solvation = -2662.086995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96402 -36.61717 -33.64569 -32.07734 -31.25532 -29.61599 -27.33653 -26.40653 -25.55645 -23.93467 -22.55277 -20.33692 -19.81807 -18.83334 -17.95861 -16.88253 -16.26782 -15.04792 -14.78526 -14.46348 -13.86831 -13.70423 -13.49758 -12.87929 -12.60169 -12.53740 -12.30167 -11.98800 -11.58616 -11.36645 -11.17437 -10.93281 -10.84893 -10.70020 -10.60659 -10.49181 -10.35333 -10.22109 -10.01481 -9.97153 -9.79885 -9.71106 -9.52760 -9.42951 -8.99838 -8.39180 -7.09479 -6.08690 -4.00704 3.26081 3.35485 3.37015 4.41818 4.61469 4.79453 4.84027 5.08013 5.27709 5.38838 5.43485 5.54174 5.71912 5.78434 5.87551 5.94606 5.99053 6.02888 6.12529 6.13344 6.18543 6.20923 6.24911 6.25805 6.32162 6.35143 6.44556 6.48702 6.57439 6.61921 6.66840 6.75099 6.91609 6.95310 7.00704 7.06699 7.20978 7.29187 7.60471 7.75396 8.14991 8.21434 8.72238 9.06731 9.58908 11.04225 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030822 B = 0.007443 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.212011 B = 3760.871912 C = 4116.117755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.179 3.821 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.862 3.138 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.517 5.517 14 C 0.032 3.968 15 C 0.082 3.918 16 H 0.045 0.955 17 C -0.144 4.144 18 C -0.111 4.111 19 C -0.098 4.098 20 H 0.069 0.931 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.010 0.990 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -3.239 -15.068 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.072 3.928 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.529 5.529 9 Si 0.690 3.310 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.241 5.241 14 C -0.116 4.116 15 C -0.027 4.027 16 H 0.063 0.937 17 C -0.182 4.182 18 C -0.149 4.149 19 C -0.117 4.117 20 H 0.087 0.913 21 C -0.154 4.154 22 C -0.169 4.169 23 C -0.129 4.129 24 C -0.092 4.092 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.195 -3.148 -14.877 15.208 hybrid contribution 2.123 -0.328 0.266 2.164 sum 1.928 -3.477 -14.611 15.142 Atomic orbital electron populations 1.21843 0.95937 0.98595 1.03532 1.21686 0.97138 0.97617 0.98227 1.19938 0.93577 0.91942 0.87334 0.98150 1.20802 1.04886 1.33249 0.93966 0.89992 1.24980 0.97258 0.94964 0.95665 1.69960 1.35447 1.47866 0.99631 0.87083 0.87848 0.79103 0.77009 1.20389 1.21568 1.19286 1.62268 1.58351 1.01405 1.02050 1.22333 0.95062 0.91788 1.02395 1.22093 0.94393 0.94840 0.91419 0.93653 1.22588 0.99293 1.01772 0.94545 1.22080 0.98262 0.97442 0.97114 1.22401 0.95341 0.97701 0.96247 0.91270 1.22701 0.95048 1.00345 0.97330 1.22843 0.97351 1.00319 0.96370 1.22275 0.94846 0.99456 0.96312 1.22408 0.95822 0.98522 0.92468 0.90718 0.90894 0.91877 0.96358 0.94982 0.93775 0.92759 0.97111 0.93231 0.90146 0.89678 0.92937 0.92062 0.93013 0.92143 0.92823 0.92400 0.92541 0.90378 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.21 37.16 0.34 -2.54 16 2 C -0.11 -2.30 5.17 -26.73 -0.14 -2.44 16 3 C 0.18 4.09 1.47 -68.86 -0.10 3.98 16 4 H 0.00 0.02 4.88 -51.93 -0.25 -0.23 16 5 C -0.49 -13.04 5.97 -34.44 -0.21 -13.24 16 6 H 0.08 2.41 7.82 -52.49 -0.41 2.00 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 9 Si 0.86 21.23 27.37 -169.99 -4.65 16.58 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.45 6.38 56.52 0.36 -6.09 16 13 N -0.52 -10.18 2.94 -227.68 -0.67 -10.85 16 14 C 0.03 0.61 8.25 60.06 0.50 1.11 16 15 C 0.08 1.38 2.11 -67.21 -0.14 1.24 16 16 H 0.05 0.83 6.53 -51.93 -0.34 0.49 16 17 C -0.14 -2.11 4.92 -26.25 -0.13 -2.24 16 18 C -0.11 -1.39 6.26 -26.12 -0.16 -1.56 16 19 C -0.10 -1.26 3.79 -88.59 -0.34 -1.59 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.12 -1.36 6.55 -24.34 -0.16 -1.51 16 22 C -0.13 -1.65 6.87 -23.90 -0.16 -1.81 16 23 C -0.09 -1.39 5.01 -24.89 -0.12 -1.51 16 24 C -0.07 -1.11 2.28 -88.56 -0.20 -1.31 16 25 H 0.07 1.19 6.72 -51.93 -0.35 0.84 16 26 H 0.07 1.70 6.55 -51.93 -0.34 1.36 16 27 H 0.06 1.19 3.47 -51.93 -0.18 1.01 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.62 5.11 -51.93 -0.27 0.35 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 33 H 0.05 0.83 6.97 -51.93 -0.36 0.47 16 34 H 0.08 1.74 6.74 -51.93 -0.35 1.39 16 35 H 0.08 1.27 4.90 -51.93 -0.25 1.01 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.67 7.02 -51.93 -0.36 0.30 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.32 5.49 -51.93 -0.28 1.03 16 44 H 0.07 1.14 7.59 -51.93 -0.39 0.74 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -27.47 305.29 -8.50 -35.97 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.43 Total: 0.85 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.12 Total: -21.48 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.10 Total: -36.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.65 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.47 -8.50 -35.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.307 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds