Wall clock time and date at job start Mon Mar 30 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47408 * 2 1 4 4 H 1.08997 * 109.47386 * 171.91056 * 3 2 1 5 5 C 1.50709 * 109.47137 * 51.91263 * 3 2 1 6 6 H 1.08002 * 119.99664 * 276.04654 * 5 3 2 7 7 C 1.37866 * 120.00072 * 96.04720 * 5 3 2 8 8 N 1.31515 * 119.99983 * 196.02393 * 7 5 3 9 9 Si 1.86807 * 119.99962 * 15.74326 * 7 5 3 10 10 H 1.48497 * 109.47190 * 84.68614 * 9 7 5 11 11 H 1.48508 * 109.46795 * 204.68483 * 9 7 5 12 12 H 1.48497 * 109.46886 * 324.68298 * 9 7 5 13 13 N 1.46905 * 109.46706 * 291.91454 * 3 2 1 14 14 C 1.46898 * 110.99710 * 184.22978 * 13 3 2 15 15 C 1.46892 * 111.00153 * 308.18130 * 13 3 2 16 16 H 1.09000 * 110.06918 * 343.64394 * 15 13 3 17 17 C 1.53540 * 110.08805 * 222.11949 * 15 13 3 18 18 C 1.53395 * 107.25564 * 223.39155 * 17 15 13 19 19 C 1.53790 * 107.61831 * 0.95729 * 18 17 15 20 20 H 1.09004 * 111.82811 * 253.57199 * 19 18 17 21 21 C 1.54152 * 108.36479 * 129.86178 * 19 18 17 22 22 C 1.56333 * 105.72824 * 248.63916 * 21 19 18 23 23 C 1.54965 * 104.58981 * 22.21646 * 22 21 19 24 24 C 1.53443 * 110.08427 * 105.22205 * 15 13 3 25 25 H 1.09000 * 111.94468 * 268.39403 * 24 15 13 26 26 H 1.08998 * 109.47204 * 307.38176 * 1 2 3 27 27 H 1.09004 * 109.47049 * 67.37847 * 1 2 3 28 28 H 1.08997 * 109.47505 * 187.38122 * 1 2 3 29 29 H 1.08994 * 109.47307 * 239.99444 * 2 1 3 30 30 H 1.09005 * 109.46956 * 119.99837 * 2 1 3 31 31 H 0.97006 * 119.99713 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47520 * 81.06268 * 14 13 3 33 33 H 1.09002 * 109.47514 * 201.06274 * 14 13 3 34 34 H 1.09004 * 109.47440 * 321.06533 * 14 13 3 35 35 H 1.08995 * 109.88498 * 342.80284 * 17 15 13 36 36 H 1.08999 * 109.89006 * 103.82432 * 17 15 13 37 37 H 1.08995 * 109.82612 * 120.47921 * 18 17 15 38 38 H 1.08997 * 109.82124 * 241.34654 * 18 17 15 39 39 H 1.09004 * 109.99808 * 7.82720 * 21 19 18 40 40 H 1.08998 * 110.00039 * 129.16980 * 21 19 18 41 41 H 1.09001 * 110.13475 * 263.50316 * 22 21 19 42 42 H 1.09001 * 110.50007 * 141.11204 * 22 21 19 43 43 H 1.09003 * 110.80038 * 203.75835 * 23 22 21 44 44 H 1.08996 * 110.96451 * 80.34668 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1204 1.4459 0.1446 5 6 1.3812 2.2083 1.1183 6 1 0.4048 2.6459 0.9711 7 6 2.0248 2.3502 2.3293 8 7 1.3497 2.7300 3.3922 9 14 3.8540 1.9955 2.4621 10 1 4.6224 3.2029 2.0661 11 1 4.1876 1.6339 3.8633 12 1 4.2060 0.8676 1.5625 13 7 1.7159 2.0764 -1.2850 14 6 2.2785 3.4312 -1.3603 15 6 2.1767 1.2518 -2.4099 16 1 2.8983 0.5129 -2.0611 17 6 2.8116 2.1399 -3.4895 18 6 2.2967 1.6446 -4.8469 19 6 1.3342 0.4749 -4.5810 20 1 1.7788 -0.4842 -4.8465 21 6 0.0276 0.7352 -5.3565 22 6 -1.0607 1.0182 -4.2703 23 6 -0.2593 1.4692 -3.0230 24 6 0.9835 0.5520 -3.0738 25 1 0.7986 -0.4329 -2.6450 26 1 -0.3633 0.6239 0.8166 27 1 -0.3633 0.3953 -0.9486 28 1 -0.3634 -1.0191 0.1320 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8025 2.8295 4.2443 32 1 3.3321 3.3726 -1.6335 33 1 1.7397 4.0072 -2.1127 34 1 2.1814 3.9195 -0.3906 35 1 2.5155 3.1778 -3.3370 36 1 3.8974 2.0545 -3.4487 37 1 1.7682 2.4493 -5.3579 38 1 3.1330 1.3052 -5.4580 39 1 0.1472 1.6004 -6.0086 40 1 -0.2373 -0.1425 -5.9459 41 1 -1.6212 0.1085 -4.0549 42 1 -1.7316 1.8115 -4.5998 43 1 -0.8315 1.2955 -2.1117 44 1 0.0295 2.5172 -3.1030 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707930458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:07 Heat of formation + Delta-G solvation = -12.098649 kcal Electronic energy + Delta-G solvation = -20587.407340 eV Core-core repulsion = 17924.694310 eV Total energy + Delta-G solvation = -2662.713030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22551 -38.11835 -35.18820 -33.95011 -32.71717 -30.90073 -28.76053 -28.00054 -26.94897 -25.37361 -24.26044 -21.43632 -21.39579 -20.00416 -19.37568 -18.83746 -17.63452 -16.50770 -16.38037 -15.93924 -15.50974 -15.03920 -14.75166 -14.54585 -14.28151 -13.91508 -13.86488 -13.35642 -13.10179 -12.91088 -12.72296 -12.54132 -12.44280 -12.10653 -12.03516 -11.75136 -11.69474 -11.59524 -11.45629 -11.38616 -11.20662 -11.07625 -10.90213 -10.88750 -10.84781 -10.50284 -8.70776 -8.25991 -6.19917 1.28422 1.31696 1.39323 2.33858 3.04400 3.32031 3.68561 3.73980 3.95469 4.31468 4.32176 4.38162 4.45928 4.53135 4.58559 4.61287 4.71541 4.77383 4.79241 4.80649 4.89020 4.92932 4.99067 5.05827 5.07706 5.17057 5.20126 5.25172 5.26250 5.28669 5.31995 5.39675 5.42775 5.49343 5.53430 5.62532 5.69036 5.77597 5.81052 5.95320 6.25755 6.53587 6.82730 6.89355 7.42412 8.90814 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030822 B = 0.007443 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.212011 B = 3760.871912 C = 4116.117755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.183 3.817 4 H -0.010 1.010 5 C -0.476 4.476 6 H 0.041 0.959 7 C 0.018 3.982 8 N -0.940 5.940 9 Si 0.921 3.079 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.522 5.522 14 C 0.036 3.964 15 C 0.077 3.923 16 H 0.034 0.966 17 C -0.142 4.142 18 C -0.106 4.106 19 C -0.093 4.093 20 H 0.081 0.919 21 C -0.110 4.110 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.075 4.075 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -4.321 -18.180 18.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.007 0.993 5 C -0.514 4.514 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.580 5.580 9 Si 0.747 3.253 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.181 1.181 13 N -0.246 5.246 14 C -0.112 4.112 15 C -0.032 4.032 16 H 0.052 0.948 17 C -0.180 4.180 18 C -0.143 4.143 19 C -0.112 4.112 20 H 0.099 0.901 21 C -0.148 4.148 22 C -0.165 4.165 23 C -0.128 4.128 24 C -0.094 4.094 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.817 -4.235 -18.019 18.528 hybrid contribution 1.721 0.033 1.193 2.094 sum 2.537 -4.202 -16.826 17.528 Atomic orbital electron populations 1.21737 0.95369 0.99198 1.02733 1.21634 0.97595 0.96493 0.98756 1.19772 0.92366 0.92488 0.87801 0.99261 1.20883 1.03149 1.32212 0.95185 0.94104 1.25675 1.01333 0.95504 0.95421 1.70094 1.37191 1.50481 1.00260 0.86127 0.82747 0.79424 0.77031 1.19674 1.21543 1.18066 1.62167 1.58848 1.01926 1.01637 1.22310 0.96235 0.91456 1.01166 1.22219 0.95199 0.94762 0.90977 0.94799 1.22541 0.99431 1.01019 0.94978 1.22062 0.98833 0.97566 0.95877 1.22388 0.96176 0.98477 0.94170 0.90106 1.22677 0.93624 1.01583 0.96909 1.22802 0.97602 1.00701 0.95366 1.22162 0.95156 0.98813 0.96662 1.22389 0.94918 0.97740 0.94320 0.91398 0.94799 0.90476 0.94142 0.92431 0.95127 0.92843 0.95827 0.91021 0.93556 0.90039 0.92516 0.91134 0.91318 0.91075 0.91195 0.92000 0.91747 0.92863 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 9.21 71.98 0.66 -4.78 16 2 C -0.11 -4.48 5.17 30.59 0.16 -4.33 16 3 C 0.18 8.43 1.47 44.17 0.06 8.49 16 4 H -0.01 -0.49 4.88 -2.39 -0.01 -0.50 16 5 C -0.48 -26.27 5.97 25.60 0.15 -26.12 16 6 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 7 C 0.02 1.05 5.47 84.65 0.46 1.51 16 8 N -0.94 -58.07 13.96 21.44 0.30 -57.77 16 9 Si 0.92 44.50 27.37 68.60 1.88 46.37 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.26 -11.80 6.38 99.48 0.63 -11.17 16 13 N -0.52 -20.39 2.94 -874.25 -2.57 -22.96 16 14 C 0.04 1.37 8.25 127.69 1.05 2.42 16 15 C 0.08 2.47 2.11 45.25 0.10 2.56 16 16 H 0.03 1.17 6.53 -2.39 -0.02 1.16 16 17 C -0.14 -3.75 4.92 30.91 0.15 -3.60 16 18 C -0.11 -2.23 6.26 30.99 0.19 -2.03 16 19 C -0.09 -2.03 3.79 -9.48 -0.04 -2.07 16 20 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 21 C -0.11 -2.11 6.55 32.14 0.21 -1.90 16 22 C -0.13 -2.84 6.87 32.43 0.22 -2.62 16 23 C -0.09 -2.61 5.01 31.79 0.16 -2.45 16 24 C -0.07 -2.09 2.28 -9.46 -0.02 -2.11 16 25 H 0.07 1.99 6.72 -2.39 -0.02 1.98 16 26 H 0.03 1.62 6.55 -2.39 -0.02 1.60 16 27 H 0.08 2.91 3.47 -2.38 -0.01 2.90 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.13 5.11 -2.39 -0.01 2.12 16 30 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 32 H 0.02 0.81 6.86 -2.39 -0.02 0.80 16 33 H 0.07 2.35 6.97 -2.39 -0.02 2.33 16 34 H 0.05 2.04 6.74 -2.39 -0.02 2.03 16 35 H 0.08 2.21 4.90 -2.39 -0.01 2.20 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.38 7.02 -2.39 -0.02 1.37 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.24 7.02 -2.39 -0.02 1.22 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.79 5.49 -2.39 -0.01 1.77 16 44 H 0.06 1.79 7.59 -2.39 -0.02 1.77 16 Total: -1.00 -61.12 305.29 4.03 -57.09 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.90 Total: 14.29 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.53 Total: -37.01 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.27 Total: -80.74 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.37 kcal Total: -61.12 4.03 -57.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.992 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds