Wall clock time and date at job start Mon Mar 30 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 H 1.09000 * 109.47166 * 182.24838 * 3 2 1 5 5 C 1.50701 * 109.46724 * 62.25254 * 3 2 1 6 6 H 1.07999 * 119.99947 * 245.83636 * 5 3 2 7 7 C 1.37881 * 120.00331 * 65.83545 * 5 3 2 8 8 N 1.31513 * 119.99895 * 191.65996 * 7 5 3 9 9 Si 1.86798 * 119.99657 * 11.65993 * 7 5 3 10 10 H 1.48502 * 109.46906 * 92.22842 * 9 7 5 11 11 H 1.48506 * 109.46638 * 212.22398 * 9 7 5 12 12 H 1.48496 * 109.47270 * 332.22148 * 9 7 5 13 13 N 1.46896 * 109.47128 * 302.25238 * 3 2 1 14 14 C 1.46903 * 110.99798 * 179.40857 * 13 3 2 15 15 C 1.46894 * 111.00140 * 303.36362 * 13 3 2 16 16 H 1.09002 * 110.56218 * 49.71579 * 15 13 3 17 17 C 1.55003 * 110.48589 * 287.69789 * 15 13 3 18 18 C 1.56258 * 105.65254 * 248.85238 * 17 15 13 19 19 C 1.51732 * 101.91762 * 24.48367 * 18 17 15 20 20 H 1.09001 * 111.63611 * 71.88493 * 19 18 17 21 21 C 1.51729 * 122.51734 * 206.95919 * 19 18 17 22 22 C 1.56254 * 101.94833 * 153.06076 * 21 19 18 23 23 C 1.55920 * 105.87060 * 334.72908 * 22 21 19 24 24 C 1.49973 * 110.51009 * 172.38687 * 15 13 3 25 25 H 1.09000 * 108.50076 * 196.26871 * 24 15 13 26 26 H 1.09007 * 109.46957 * 64.86675 * 1 2 3 27 27 H 1.09000 * 109.47470 * 184.86314 * 1 2 3 28 28 H 1.08998 * 109.47429 * 304.86816 * 1 2 3 29 29 H 1.09001 * 109.47506 * 240.00162 * 2 1 3 30 30 H 1.09006 * 109.46964 * 120.00134 * 2 1 3 31 31 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46991 * 200.71603 * 14 13 3 33 33 H 1.08994 * 109.47354 * 320.71548 * 14 13 3 34 34 H 1.08994 * 109.46905 * 80.71577 * 14 13 3 35 35 H 1.09001 * 110.92268 * 129.47993 * 17 15 13 36 36 H 1.08997 * 109.69293 * 7.58081 * 17 15 13 37 37 H 1.08993 * 110.94126 * 266.32113 * 18 17 15 38 38 H 1.09003 * 110.93603 * 142.63810 * 18 17 15 39 39 H 1.08995 * 110.94246 * 34.88589 * 21 19 18 40 40 H 1.08997 * 110.93944 * 271.22964 * 21 19 18 41 41 H 1.08997 * 110.17436 * 93.83077 * 22 21 19 42 42 H 1.09002 * 110.17337 * 215.62971 * 22 21 19 43 43 H 1.08997 * 110.50850 * 112.07123 * 23 22 21 44 44 H 1.09004 * 110.50375 * 234.77467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 -0.0403 5 6 1.5838 2.1365 1.2575 6 1 0.8846 2.9575 1.1978 7 6 2.0589 1.7234 2.4841 8 7 1.4982 2.1646 3.5890 9 14 3.4989 0.5372 2.5766 10 1 4.7666 1.3044 2.6751 11 1 3.3503 -0.3292 3.7736 12 1 3.5244 -0.3066 1.3550 13 7 1.5064 2.1505 -1.1713 14 6 1.9650 3.5459 -1.1968 15 6 1.8649 1.4557 -2.4148 16 1 1.6221 0.3954 -2.3446 17 6 3.3738 1.6350 -2.7208 18 6 3.4416 2.5486 -3.9867 19 6 2.1196 3.2893 -3.9097 20 1 2.1159 4.0222 -3.1029 21 6 1.4172 3.8343 -5.1393 22 6 -0.0784 3.8281 -4.6869 23 6 -0.1854 2.7321 -3.5831 24 6 1.1645 2.0787 -3.5855 25 1 1.2120 1.3859 -4.4257 26 1 -0.3633 0.4365 -0.9304 27 1 -0.3634 -1.0239 0.0871 28 1 -0.3634 0.5875 0.8431 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.8322 1.8737 4.4519 32 1 1.2976 4.1362 -1.8247 33 1 1.9612 3.9483 -0.1839 34 1 2.9764 3.5886 -1.6009 35 1 3.8464 0.6742 -2.9250 36 1 3.8640 2.1230 -1.8784 37 1 3.5009 1.9506 -4.8960 38 1 4.2807 3.2415 -3.9225 39 1 1.5676 3.1783 -5.9967 40 1 1.7525 4.8471 -5.3626 41 1 -0.3515 4.8010 -4.2782 42 1 -0.7246 3.5785 -5.5284 43 1 -0.3884 3.1856 -2.6130 44 1 -0.9602 2.0087 -3.8372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707930460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:11 Heat of formation + Delta-G solvation = 20.677787 kcal Electronic energy + Delta-G solvation = -20590.871394 eV Core-core repulsion = 17929.579657 eV Total energy + Delta-G solvation = -2661.291737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64269 -36.67843 -33.74959 -32.06265 -31.26697 -29.57966 -26.89059 -26.54361 -26.09547 -23.73836 -22.50998 -20.72547 -19.80267 -19.64035 -17.91818 -16.41509 -15.87697 -15.24811 -14.93001 -14.32637 -14.07919 -13.88121 -13.31753 -12.97891 -12.68224 -12.50216 -12.35823 -11.96521 -11.68837 -11.47837 -11.22397 -11.18215 -10.97121 -10.93862 -10.56714 -10.48811 -10.47090 -10.23692 -10.15139 -10.00551 -9.85293 -9.58233 -9.37164 -9.17232 -8.87611 -8.44342 -7.17365 -6.05479 -3.99140 3.27825 3.37562 3.40023 4.36593 4.43948 4.82119 4.93142 5.04866 5.26885 5.28341 5.37801 5.47772 5.59823 5.74731 5.78181 5.88757 5.92037 5.97275 5.98123 6.03532 6.12857 6.17694 6.21612 6.25639 6.30690 6.33963 6.43353 6.46540 6.51973 6.57404 6.65120 6.74518 6.83340 6.86999 6.90888 7.07410 7.15736 7.27029 7.55180 7.74771 8.07690 8.19785 8.72278 9.05157 9.60127 11.07415 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.007213 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.729154 B = 3880.731414 C = 4041.043555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.188 3.812 4 H -0.008 1.008 5 C -0.498 4.498 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.506 5.506 14 C 0.018 3.982 15 C 0.088 3.912 16 H 0.081 0.919 17 C -0.158 4.158 18 C -0.104 4.104 19 C -0.143 4.143 20 H 0.108 0.892 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.087 4.087 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 0.390 -15.374 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C 0.080 3.920 4 H 0.009 0.991 5 C -0.536 4.536 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.229 5.229 14 C -0.130 4.130 15 C -0.022 4.022 16 H 0.099 0.901 17 C -0.197 4.197 18 C -0.142 4.142 19 C -0.160 4.160 20 H 0.126 0.874 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.139 4.139 24 C -0.106 4.106 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.360 0.371 -15.118 15.126 hybrid contribution 1.831 -0.786 0.129 1.997 sum 2.191 -0.415 -14.989 15.154 Atomic orbital electron populations 1.21485 0.95727 0.98247 1.02782 1.21972 0.97056 0.97975 0.98640 1.19630 0.91990 0.90976 0.89381 0.99085 1.20867 1.26989 1.17733 0.88061 0.90131 1.24856 0.96401 0.95813 0.95694 1.69934 1.40266 1.45609 0.97605 0.87342 0.83892 0.82072 0.78205 1.20990 1.21457 1.17624 1.62143 1.58565 1.01452 1.00707 1.22721 0.96757 0.90791 1.02702 1.21545 0.91337 0.98783 0.90490 0.90135 1.23488 0.99144 0.99275 0.97808 1.21859 0.96802 0.97779 0.97751 1.23173 0.94870 0.98790 0.99215 0.87438 1.21922 0.95412 1.00135 0.97212 1.22930 0.95785 0.99216 0.98101 1.21341 0.96020 0.97078 0.99489 1.21489 0.95115 0.96662 0.97332 0.92625 0.93193 0.96219 0.91111 0.95428 0.92777 0.92813 0.92563 0.90151 0.95972 0.92416 0.90957 0.92224 0.92530 0.92255 0.92422 0.92021 0.92542 0.89936 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.52 37.15 0.35 -2.24 16 2 C -0.12 -2.57 4.50 -26.73 -0.12 -2.69 16 3 C 0.19 4.26 1.07 -68.87 -0.07 4.19 16 4 H -0.01 -0.20 5.80 -51.93 -0.30 -0.50 16 5 C -0.50 -13.33 6.69 -34.44 -0.23 -13.56 16 6 H 0.08 2.37 7.35 -52.49 -0.39 1.99 16 7 C 0.07 2.07 5.39 -17.82 -0.10 1.98 16 8 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 9 Si 0.86 21.01 25.81 -169.99 -4.39 16.62 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.25 -5.83 5.25 56.52 0.30 -5.53 16 13 N -0.51 -9.88 3.37 -228.84 -0.77 -10.65 16 14 C 0.02 0.33 7.36 60.07 0.44 0.78 16 15 C 0.09 1.47 2.67 -68.16 -0.18 1.29 16 16 H 0.08 1.41 5.84 -51.93 -0.30 1.11 16 17 C -0.16 -2.46 5.67 -23.92 -0.14 -2.59 16 18 C -0.10 -1.38 6.41 -25.63 -0.16 -1.54 16 19 C -0.14 -1.90 2.49 -89.41 -0.22 -2.13 16 20 H 0.11 1.57 3.79 -51.93 -0.20 1.37 16 21 C -0.11 -1.26 6.61 -25.63 -0.17 -1.43 16 22 C -0.12 -1.43 6.94 -23.42 -0.16 -1.59 16 23 C -0.10 -1.41 6.25 -26.67 -0.17 -1.57 16 24 C -0.09 -1.26 2.15 -91.13 -0.20 -1.45 16 25 H 0.06 0.77 8.02 -51.93 -0.42 0.36 16 26 H 0.05 0.98 7.58 -51.93 -0.39 0.59 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 1.66 7.13 -51.93 -0.37 1.29 16 29 H 0.03 0.54 6.27 -51.93 -0.33 0.22 16 30 H 0.05 1.24 4.66 -51.93 -0.24 1.00 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 0.95 5.09 -51.93 -0.26 0.68 16 33 H 0.08 1.71 6.16 -51.93 -0.32 1.39 16 34 H 0.02 0.39 4.73 -51.93 -0.25 0.14 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.26 5.41 -51.93 -0.28 0.98 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.31 6.70 -51.93 -0.35 0.96 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -27.68 302.44 -8.39 -36.07 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.44 Total: 1.99 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.12 Total: -22.56 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.00 Total: -36.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.39 Total: 16.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.68 -8.39 -36.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.748 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds