Wall clock time and date at job start Mon Mar 30 2020 07:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 H 1.09000 * 109.47166 * 182.24838 * 3 2 1 5 5 C 1.50701 * 109.46724 * 62.25254 * 3 2 1 6 6 H 1.07999 * 119.99947 * 245.83636 * 5 3 2 7 7 C 1.37881 * 120.00331 * 65.83545 * 5 3 2 8 8 N 1.31513 * 119.99895 * 191.65996 * 7 5 3 9 9 Si 1.86798 * 119.99657 * 11.65993 * 7 5 3 10 10 H 1.48502 * 109.46906 * 92.22842 * 9 7 5 11 11 H 1.48506 * 109.46638 * 212.22398 * 9 7 5 12 12 H 1.48496 * 109.47270 * 332.22148 * 9 7 5 13 13 N 1.46896 * 109.47128 * 302.25238 * 3 2 1 14 14 C 1.46903 * 110.99798 * 179.40857 * 13 3 2 15 15 C 1.46894 * 111.00140 * 303.36362 * 13 3 2 16 16 H 1.09002 * 110.56218 * 49.71579 * 15 13 3 17 17 C 1.55003 * 110.48589 * 287.69789 * 15 13 3 18 18 C 1.56258 * 105.65254 * 248.85238 * 17 15 13 19 19 C 1.51732 * 101.91762 * 24.48367 * 18 17 15 20 20 H 1.09001 * 111.63611 * 71.88493 * 19 18 17 21 21 C 1.51729 * 122.51734 * 206.95919 * 19 18 17 22 22 C 1.56254 * 101.94833 * 153.06076 * 21 19 18 23 23 C 1.55920 * 105.87060 * 334.72908 * 22 21 19 24 24 C 1.49973 * 110.51009 * 172.38687 * 15 13 3 25 25 H 1.09000 * 108.50076 * 196.26871 * 24 15 13 26 26 H 1.09007 * 109.46957 * 64.86675 * 1 2 3 27 27 H 1.09000 * 109.47470 * 184.86314 * 1 2 3 28 28 H 1.08998 * 109.47429 * 304.86816 * 1 2 3 29 29 H 1.09001 * 109.47506 * 240.00162 * 2 1 3 30 30 H 1.09006 * 109.46964 * 120.00134 * 2 1 3 31 31 H 0.97001 * 120.00044 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46991 * 200.71603 * 14 13 3 33 33 H 1.08994 * 109.47354 * 320.71548 * 14 13 3 34 34 H 1.08994 * 109.46905 * 80.71577 * 14 13 3 35 35 H 1.09001 * 110.92268 * 129.47993 * 17 15 13 36 36 H 1.08997 * 109.69293 * 7.58081 * 17 15 13 37 37 H 1.08993 * 110.94126 * 266.32113 * 18 17 15 38 38 H 1.09003 * 110.93603 * 142.63810 * 18 17 15 39 39 H 1.08995 * 110.94246 * 34.88589 * 21 19 18 40 40 H 1.08997 * 110.93944 * 271.22964 * 21 19 18 41 41 H 1.08997 * 110.17436 * 93.83077 * 22 21 19 42 42 H 1.09002 * 110.17337 * 215.62971 * 22 21 19 43 43 H 1.08997 * 110.50850 * 112.07123 * 23 22 21 44 44 H 1.09004 * 110.50375 * 234.77467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 -0.0403 5 6 1.5838 2.1365 1.2575 6 1 0.8846 2.9575 1.1978 7 6 2.0589 1.7234 2.4841 8 7 1.4982 2.1646 3.5890 9 14 3.4989 0.5372 2.5766 10 1 4.7666 1.3044 2.6751 11 1 3.3503 -0.3292 3.7736 12 1 3.5244 -0.3066 1.3550 13 7 1.5064 2.1505 -1.1713 14 6 1.9650 3.5459 -1.1968 15 6 1.8649 1.4557 -2.4148 16 1 1.6221 0.3954 -2.3446 17 6 3.3738 1.6350 -2.7208 18 6 3.4416 2.5486 -3.9867 19 6 2.1196 3.2893 -3.9097 20 1 2.1159 4.0222 -3.1029 21 6 1.4172 3.8343 -5.1393 22 6 -0.0784 3.8281 -4.6869 23 6 -0.1854 2.7321 -3.5831 24 6 1.1645 2.0787 -3.5855 25 1 1.2120 1.3859 -4.4257 26 1 -0.3633 0.4365 -0.9304 27 1 -0.3634 -1.0239 0.0871 28 1 -0.3634 0.5875 0.8431 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.8322 1.8737 4.4519 32 1 1.2976 4.1362 -1.8247 33 1 1.9612 3.9483 -0.1839 34 1 2.9764 3.5886 -1.6009 35 1 3.8464 0.6742 -2.9250 36 1 3.8640 2.1230 -1.8784 37 1 3.5009 1.9506 -4.8960 38 1 4.2807 3.2415 -3.9225 39 1 1.5676 3.1783 -5.9967 40 1 1.7525 4.8471 -5.3626 41 1 -0.3515 4.8010 -4.2782 42 1 -0.7246 3.5785 -5.5284 43 1 -0.3884 3.1856 -2.6130 44 1 -0.9602 2.0087 -3.8372 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707930460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:10 Heat of formation + Delta-G solvation = 5.289945 kcal Electronic energy + Delta-G solvation = -20591.538661 eV Core-core repulsion = 17929.579657 eV Total energy + Delta-G solvation = -2661.959004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87044 -38.19822 -35.20210 -33.88316 -32.89588 -30.80696 -28.65025 -27.85869 -27.29680 -25.32477 -24.17999 -22.06470 -21.14575 -20.77085 -19.35570 -18.40799 -17.39119 -16.57537 -16.32759 -15.77604 -15.46664 -15.36750 -14.81868 -14.65842 -14.32839 -13.91418 -13.52494 -13.49803 -13.10723 -12.92371 -12.83404 -12.68290 -12.49822 -12.26831 -12.07166 -11.95426 -11.87499 -11.69929 -11.62001 -11.28426 -11.14191 -11.03840 -10.88126 -10.70802 -10.56961 -10.50742 -8.75295 -8.23739 -6.20140 1.31205 1.35909 1.43855 2.36729 3.11018 3.24862 3.41889 3.87355 3.93638 4.20345 4.30805 4.37467 4.40314 4.46179 4.56062 4.58735 4.67308 4.68727 4.76396 4.79048 4.80992 4.91814 4.93230 4.99766 5.04542 5.10538 5.15367 5.21998 5.22639 5.29685 5.33478 5.38513 5.40438 5.44402 5.47040 5.59788 5.67501 5.74658 5.77534 5.84471 6.17672 6.53232 6.84033 6.87903 7.42655 8.92989 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030636 B = 0.007213 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.729154 B = 3880.731414 C = 4041.043555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C 0.194 3.806 4 H -0.016 1.016 5 C -0.487 4.487 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.915 3.085 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.226 1.226 13 N -0.514 5.514 14 C 0.029 3.971 15 C 0.084 3.916 16 H 0.076 0.924 17 C -0.158 4.158 18 C -0.096 4.096 19 C -0.139 4.139 20 H 0.090 0.910 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.103 4.103 24 C -0.090 4.090 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -0.806 -18.597 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.157 4.157 3 C 0.086 3.914 4 H 0.002 0.998 5 C -0.525 4.525 6 H 0.056 0.944 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.741 3.259 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.149 1.149 13 N -0.236 5.236 14 C -0.119 4.119 15 C -0.025 4.025 16 H 0.094 0.906 17 C -0.197 4.197 18 C -0.133 4.133 19 C -0.157 4.157 20 H 0.108 0.892 21 C -0.140 4.140 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.108 4.108 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.259 -0.826 -18.376 18.438 hybrid contribution 1.467 -0.345 1.098 1.864 sum 2.726 -1.171 -17.278 17.531 Atomic orbital electron populations 1.21349 0.95190 0.99161 1.01481 1.21931 0.97529 0.96918 0.99309 1.19431 0.91404 0.91704 0.88908 0.99843 1.21035 1.25150 1.16268 0.90078 0.94410 1.25610 0.98995 0.97988 0.95320 1.70079 1.42330 1.48035 0.98250 0.86396 0.80232 0.80258 0.79048 1.20968 1.21560 1.14932 1.62080 1.58750 1.01709 1.01109 1.22626 0.97968 0.90561 1.00726 1.21658 0.92867 0.98333 0.89655 0.90572 1.23450 0.97732 1.00271 0.98250 1.21822 0.96838 0.97530 0.97146 1.23109 0.94857 0.97942 0.99769 0.89203 1.21902 0.94518 1.00994 0.96572 1.22896 0.96548 0.98298 0.97786 1.21334 0.95975 0.97775 0.99012 1.21476 0.95546 0.97387 0.96438 0.91039 0.92362 0.93689 0.94928 0.92607 0.94021 0.92929 0.90818 0.93962 0.94773 0.91320 0.93266 0.90308 0.91877 0.90868 0.91349 0.92076 0.90853 0.92698 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.52 71.98 0.69 -3.96 16 2 C -0.12 -4.98 4.50 30.59 0.14 -4.85 16 3 C 0.19 8.80 1.07 44.17 0.05 8.85 16 4 H -0.02 -0.74 5.80 -2.39 -0.01 -0.76 16 5 C -0.49 -27.09 6.69 25.60 0.17 -26.92 16 6 H 0.04 2.38 7.35 -2.91 -0.02 2.36 16 7 C 0.02 1.03 5.39 84.66 0.46 1.49 16 8 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 9 Si 0.92 43.79 25.81 68.60 1.77 45.56 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.23 -9.82 5.25 99.48 0.52 -9.29 16 13 N -0.51 -19.98 3.37 -877.91 -2.95 -22.93 16 14 C 0.03 1.09 7.36 127.69 0.94 2.03 16 15 C 0.08 2.63 2.67 44.63 0.12 2.75 16 16 H 0.08 2.45 5.84 -2.39 -0.01 2.44 16 17 C -0.16 -4.51 5.67 32.41 0.18 -4.33 16 18 C -0.10 -2.19 6.41 31.31 0.20 -1.99 16 19 C -0.14 -3.29 2.49 -10.01 -0.02 -3.32 16 20 H 0.09 2.45 3.79 -2.39 -0.01 2.44 16 21 C -0.10 -1.97 6.61 31.31 0.21 -1.76 16 22 C -0.12 -2.40 6.94 32.74 0.23 -2.17 16 23 C -0.10 -2.66 6.25 30.63 0.19 -2.46 16 24 C -0.09 -2.34 2.15 -11.12 -0.02 -2.36 16 25 H 0.07 1.70 8.02 -2.39 -0.02 1.68 16 26 H 0.06 2.23 7.58 -2.38 -0.02 2.21 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.54 7.13 -2.39 -0.02 1.53 16 29 H 0.06 2.04 6.27 -2.39 -0.01 2.02 16 30 H 0.04 1.84 4.66 -2.38 -0.01 1.83 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.07 2.50 5.09 -2.39 -0.01 2.49 16 33 H 0.04 1.89 6.16 -2.39 -0.01 1.88 16 34 H 0.03 1.19 4.73 -2.39 -0.01 1.18 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.64 5.41 -2.39 -0.01 1.63 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.71 6.70 -2.39 -0.02 1.69 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -61.83 302.44 3.42 -58.42 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.79 Total: 16.70 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 3.52 Total: -39.01 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -2.65 Total: -81.67 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.77 Total: 45.56 kcal Total: -61.83 3.42 -58.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.705 kcal (2) G-P(sol) polarization free energy of solvation -61.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds