Wall clock time and date at job start Mon Mar 30 2020 07:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 H 1.09003 * 109.47318 * 179.51665 * 3 2 1 5 5 C 1.50706 * 109.46904 * 299.51730 * 3 2 1 6 6 H 1.07997 * 119.99792 * 119.99764 * 5 3 2 7 7 C 1.37876 * 119.99905 * 300.00049 * 5 3 2 8 8 N 1.31519 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00205 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46896 * 59.99615 * 9 7 5 11 11 H 1.48494 * 109.47459 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46449 * 300.00001 * 9 7 5 13 13 N 1.46899 * 109.47036 * 59.51634 * 3 2 1 14 14 C 1.48531 * 111.00088 * 59.78678 * 13 3 2 15 15 C 1.54939 * 103.22524 * 159.71914 * 14 13 3 16 16 C 1.54596 * 102.92335 * 322.58508 * 15 14 13 17 17 H 1.08989 * 110.31183 * 263.04257 * 16 15 14 18 18 C 1.52996 * 110.39115 * 140.91531 * 16 15 14 19 19 C 1.54269 * 110.03671 * 181.40456 * 18 16 15 20 20 C 1.54886 * 104.19889 * 217.10746 * 19 18 16 21 21 C 1.54893 * 102.74623 * 37.93995 * 20 19 18 22 22 C 1.53873 * 110.03386 * 64.23384 * 18 16 15 23 23 C 1.47904 * 110.99933 * 177.18699 * 13 3 2 24 24 H 1.09004 * 109.46743 * 295.36418 * 1 2 3 25 25 H 1.08999 * 109.47286 * 55.36386 * 1 2 3 26 26 H 1.08999 * 109.47005 * 175.36613 * 1 2 3 27 27 H 1.09000 * 109.47302 * 120.00097 * 2 1 3 28 28 H 1.09001 * 109.46971 * 239.99849 * 2 1 3 29 29 H 0.97003 * 119.99710 * 179.97438 * 8 7 5 30 30 H 1.08994 * 110.66835 * 278.15598 * 14 13 3 31 31 H 1.08998 * 110.66482 * 41.28800 * 14 13 3 32 32 H 1.09001 * 110.72511 * 204.23105 * 15 14 13 33 33 H 1.09003 * 110.87545 * 81.01566 * 15 14 13 34 34 H 1.09003 * 110.02290 * 302.84397 * 18 16 15 35 35 H 1.09004 * 110.47735 * 335.78497 * 19 18 16 36 36 H 1.08994 * 110.48886 * 98.42324 * 19 18 16 37 37 H 1.08993 * 110.75590 * 279.62379 * 20 19 18 38 38 H 1.08998 * 110.75648 * 156.25149 * 20 19 18 39 39 H 1.09007 * 110.48204 * 203.38352 * 21 20 19 40 40 H 1.08990 * 110.60061 * 80.79566 * 21 20 19 41 41 H 1.08997 * 110.03569 * 238.56796 * 22 18 16 42 42 H 1.09006 * 110.03039 * 359.95626 * 22 18 16 43 43 H 1.09002 * 109.91573 * 333.50714 * 23 13 3 44 44 H 1.08998 * 109.91906 * 94.79770 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0087 5 6 1.5474 2.1494 -1.2365 6 1 0.9258 3.0278 -1.1448 7 6 1.8904 1.6748 -2.4847 8 7 2.6479 0.6054 -2.5963 9 14 1.2805 2.5514 -4.0174 10 1 1.7761 3.9513 -4.0171 11 1 1.7855 1.8483 -5.2239 12 1 -0.2044 2.5519 -4.0293 13 7 1.5408 2.1383 1.1935 14 6 2.0030 1.4653 2.4344 15 6 1.8571 2.5692 3.5118 16 6 2.2716 3.8504 2.7524 17 1 3.3176 4.0850 2.9489 18 6 1.3793 5.0243 3.1606 19 6 1.7769 6.2895 2.3725 20 6 1.6078 7.4418 3.3935 21 6 2.1029 6.8031 4.7149 22 6 1.5864 5.3509 4.6499 23 6 2.0691 3.5181 1.2624 24 1 -0.3633 0.4402 0.9287 25 1 -0.3634 0.5841 -0.8455 26 1 -0.3633 -1.0243 -0.0830 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 2.8889 0.2713 -3.4745 30 1 1.3666 0.6121 2.6691 31 1 3.0437 1.1558 2.3393 32 1 2.5297 2.3825 4.3489 33 1 0.8255 2.6417 3.8563 34 1 0.3334 4.7806 2.9738 35 1 2.8132 6.2224 2.0411 36 1 1.1118 6.4334 1.5211 37 1 0.5613 7.7354 3.4748 38 1 2.2292 8.2945 3.1201 39 1 1.6755 7.3219 5.5730 40 1 3.1916 6.8190 4.7642 41 1 0.6410 5.2665 5.1857 42 1 2.3221 4.6725 5.0821 43 1 3.0217 3.5777 0.7359 44 1 1.3539 4.2121 0.8209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708816549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:56 Heat of formation + Delta-G solvation = -25.102843 kcal Electronic energy + Delta-G solvation = -19675.915670 eV Core-core repulsion = 17012.638736 eV Total energy + Delta-G solvation = -2663.276934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.23885 -37.18466 -34.24121 -31.62420 -30.11645 -29.32163 -28.32852 -26.26890 -25.72323 -23.19623 -21.38945 -20.60292 -20.23621 -19.05632 -18.76629 -16.01297 -15.75099 -15.48523 -15.02448 -14.31795 -14.13566 -13.32399 -13.22217 -13.07981 -12.68647 -12.32090 -12.02888 -11.77338 -11.66702 -11.55274 -11.13771 -11.04501 -10.88010 -10.84587 -10.61904 -10.58178 -10.50830 -10.39215 -10.10228 -10.01889 -9.91323 -9.82059 -9.58201 -9.26360 -8.77503 -8.36381 -7.14520 -5.95874 -3.98974 3.34291 3.38722 3.41722 4.44903 4.66761 4.75262 4.80403 5.08672 5.28686 5.30906 5.35012 5.46297 5.53805 5.71999 5.73861 5.78606 5.86463 5.89510 5.96946 6.00790 6.06064 6.16163 6.23307 6.30928 6.38099 6.43811 6.47434 6.52923 6.60262 6.63481 6.69601 6.80241 6.82633 6.88033 7.17844 7.32791 7.46622 7.68802 7.78029 7.88938 8.20809 8.40613 8.63485 9.06529 9.64778 11.10674 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.006176 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.048433 B = 4532.574623 C = 5367.241560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.209 3.791 4 H -0.003 1.003 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.116 4.116 16 C -0.093 4.093 17 H 0.064 0.936 18 C -0.078 4.078 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.058 3.942 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 7.991 12.425 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.014 0.986 5 C -0.532 4.532 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.232 5.232 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.112 4.112 17 H 0.082 0.918 18 C -0.097 4.097 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.070 4.070 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.473 7.858 12.216 14.599 hybrid contribution 0.675 0.327 -0.927 1.192 sum -0.799 8.185 11.289 13.967 Atomic orbital electron populations 1.21464 0.97321 0.97527 1.01443 1.21527 0.95172 0.98198 0.99942 1.19453 0.92578 0.91058 0.86696 0.98584 1.20999 1.30794 1.11735 0.89641 0.92258 1.24899 0.95282 0.95116 0.98854 1.69874 1.36982 1.22900 1.23591 0.86653 0.79214 0.79637 0.82463 1.20449 1.21441 1.20253 1.64846 1.55420 1.00963 1.01983 1.23115 0.97867 0.96858 0.91522 1.22533 1.00967 0.94839 0.97069 1.22186 0.98287 0.94321 0.96423 0.91801 1.21798 0.99842 0.94282 0.93747 1.22444 1.01714 0.93897 0.97724 1.22496 1.00728 0.97737 0.95345 1.22354 1.00393 0.96012 0.97432 1.22221 1.00717 0.96071 0.96742 1.22654 0.98658 0.92651 0.93049 0.94176 0.92195 0.96655 0.96991 0.89147 0.93044 0.91185 0.95145 0.92519 0.91339 0.90789 0.91552 0.91576 0.91815 0.92070 0.92329 0.91989 0.92312 0.91851 0.94416 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.36 16 2 C -0.11 -2.68 5.20 -26.73 -0.14 -2.82 16 3 C 0.21 5.26 1.44 -68.86 -0.10 5.16 16 4 H 0.00 -0.09 7.99 -51.93 -0.41 -0.51 16 5 C -0.49 -13.38 6.82 -34.44 -0.23 -13.62 16 6 H 0.06 1.63 7.43 -52.49 -0.39 1.24 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.51 -10.91 4.40 -223.88 -0.99 -11.90 16 14 C 0.03 0.64 5.40 -1.90 -0.01 0.63 16 15 C -0.12 -1.75 5.82 -24.87 -0.14 -1.89 16 16 C -0.09 -1.42 2.22 -89.26 -0.20 -1.62 16 17 H 0.06 0.96 8.14 -51.94 -0.42 0.53 16 18 C -0.08 -1.04 2.20 -89.50 -0.20 -1.23 16 19 C -0.12 -1.52 5.48 -25.07 -0.14 -1.66 16 20 C -0.13 -1.33 6.91 -24.74 -0.17 -1.50 16 21 C -0.12 -1.26 6.83 -25.07 -0.17 -1.44 16 22 C -0.12 -1.35 6.10 -25.61 -0.16 -1.50 16 23 C 0.06 1.14 5.11 -2.75 -0.01 1.12 16 24 H 0.04 0.86 7.74 -51.93 -0.40 0.46 16 25 H 0.06 1.47 7.07 -51.93 -0.37 1.10 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.01 0.26 6.96 -51.93 -0.36 -0.10 16 28 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 31 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.71 7.31 -51.93 -0.38 0.33 16 43 H 0.04 0.81 7.69 -51.93 -0.40 0.41 16 44 H 0.07 1.40 7.02 -51.93 -0.36 1.03 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -27.60 327.23 -10.24 -37.84 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.38 Total: -1.25 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -1.41 Total: -21.19 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.36 Total: -36.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.60 -10.24 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708816549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.742 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds