Wall clock time and date at job start Mon Mar 30 2020 07:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 H 1.09000 * 109.47307 * 303.95633 * 3 2 1 5 5 C 1.50692 * 109.47016 * 183.95543 * 3 2 1 6 6 H 1.08000 * 120.00519 * 300.84663 * 5 3 2 7 7 C 1.37877 * 120.00306 * 120.85181 * 5 3 2 8 8 N 1.31512 * 120.00809 * 172.91568 * 7 5 3 9 9 Si 1.86802 * 119.99831 * 352.91745 * 7 5 3 10 10 H 1.48499 * 109.47380 * 84.94435 * 9 7 5 11 11 H 1.48500 * 109.47455 * 204.94949 * 9 7 5 12 12 H 1.48503 * 109.47140 * 324.94893 * 9 7 5 13 13 N 1.46900 * 109.46960 * 63.95156 * 3 2 1 14 14 C 1.48807 * 111.18232 * 62.66868 * 13 3 2 15 15 C 1.54936 * 103.35132 * 159.50462 * 14 13 3 16 16 C 1.54599 * 102.91814 * 322.68412 * 15 14 13 17 17 H 1.08997 * 110.31190 * 263.03764 * 16 15 14 18 18 C 1.53010 * 110.39076 * 140.91696 * 16 15 14 19 19 C 1.54262 * 110.02878 * 181.40325 * 18 16 15 20 20 C 1.54897 * 104.19275 * 217.10418 * 19 18 16 21 21 C 1.54890 * 102.74816 * 37.94632 * 20 19 18 22 22 C 1.53873 * 110.03077 * 64.23506 * 18 16 15 23 23 C 1.47909 * 110.99989 * 179.97438 * 13 3 2 24 24 H 1.09007 * 109.46801 * 299.99442 * 1 2 3 25 25 H 1.08994 * 109.47152 * 59.99422 * 1 2 3 26 26 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46733 * 240.00486 * 2 1 3 28 28 H 1.08994 * 109.47170 * 120.00021 * 2 1 3 29 29 H 0.96995 * 120.00788 * 179.97438 * 8 7 5 30 30 H 1.08997 * 110.52520 * 41.06510 * 14 13 3 31 31 H 1.09000 * 110.83989 * 278.08715 * 14 13 3 32 32 H 1.09001 * 110.72780 * 204.33215 * 15 14 13 33 33 H 1.08991 * 110.87936 * 81.11555 * 15 14 13 34 34 H 1.08994 * 110.01324 * 302.84570 * 18 16 15 35 35 H 1.08994 * 110.48741 * 335.78294 * 19 18 16 36 36 H 1.09003 * 110.48501 * 98.43206 * 19 18 16 37 37 H 1.08997 * 110.75612 * 279.62765 * 20 19 18 38 38 H 1.08993 * 110.75348 * 156.25810 * 20 19 18 39 39 H 1.08996 * 110.48513 * 203.38426 * 21 20 19 40 40 H 1.08998 * 110.60044 * 80.78688 * 21 20 19 41 41 H 1.09001 * 110.03300 * 238.56648 * 22 18 16 42 42 H 1.09005 * 110.03150 * 359.95224 * 22 18 16 43 43 H 1.09002 * 109.91535 * 94.80333 * 23 13 3 44 44 H 1.08996 * 109.91682 * 333.71547 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6199 1.9764 -0.8524 5 6 3.5437 1.4437 -0.0980 6 1 4.1345 0.9462 0.6569 7 6 4.1655 2.0799 -1.1514 8 7 5.4749 2.2022 -1.1656 9 14 3.1480 2.7684 -2.5586 10 1 2.6690 4.1286 -2.2039 11 1 3.9836 2.8417 -3.7840 12 1 1.9825 1.8823 -2.8065 13 7 1.6298 2.1069 1.2443 14 6 2.2356 1.4457 2.4318 15 6 2.1529 2.5361 3.5294 16 6 2.4406 3.8375 2.7461 17 1 3.4910 4.1125 2.8420 18 6 1.5473 4.9724 3.2514 19 6 1.8162 6.2572 2.4409 20 6 1.7030 7.3956 3.4852 21 6 2.3498 6.7690 4.7454 22 6 1.8866 5.2978 4.7165 23 6 2.1068 3.5065 1.2801 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9123 2.6494 -1.9068 30 1 3.2733 1.1784 2.2325 31 1 1.6616 0.5652 2.7204 32 1 2.9112 2.3712 4.2950 33 1 1.1582 2.5653 3.9738 34 1 0.4986 4.6883 3.1651 35 1 2.8168 6.2336 2.0093 36 1 1.0656 6.3798 1.6601 37 1 0.6588 7.6467 3.6712 38 1 2.2608 8.2740 3.1609 39 1 1.9886 7.2650 5.6462 40 1 3.4367 6.8279 4.6882 41 1 1.0022 5.1724 5.3413 42 1 2.6870 4.6466 5.0679 43 1 1.3254 4.1744 0.9175 44 1 2.9994 3.6104 0.6633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708816551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:01 Heat of formation + Delta-G solvation = -26.712945 kcal Electronic energy + Delta-G solvation = -19897.607687 eV Core-core repulsion = 17234.260933 eV Total energy + Delta-G solvation = -2663.346753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.16382 -37.22452 -34.02406 -32.10572 -30.39070 -29.17810 -28.29100 -26.80874 -25.69921 -22.85180 -21.50285 -20.52962 -20.25381 -18.98326 -18.59826 -16.92852 -15.70158 -15.35703 -15.07411 -14.33215 -13.96030 -13.47175 -13.19315 -12.90455 -12.68956 -12.40997 -12.23800 -11.98759 -11.83242 -11.61081 -11.23893 -11.00186 -10.92855 -10.90586 -10.82044 -10.52171 -10.43380 -10.35615 -10.13392 -9.91453 -9.90402 -9.82143 -9.59503 -9.43261 -9.12495 -8.60548 -7.06983 -6.15091 -4.15934 3.24533 3.33157 3.36147 4.35587 4.74692 4.82854 4.88995 5.06525 5.31721 5.41123 5.44242 5.58415 5.60775 5.78797 5.82295 5.85101 5.94905 5.99170 6.04656 6.06005 6.10427 6.16250 6.19520 6.28547 6.31083 6.36600 6.44360 6.47597 6.55254 6.60036 6.71442 6.75830 6.77637 6.87392 6.98557 7.02960 7.13387 7.22855 7.28923 7.64078 8.04827 8.33115 8.46832 8.90418 9.49411 10.97362 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.007404 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.074545 B = 3780.824271 C = 4413.711079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C 0.161 3.839 4 H 0.044 0.956 5 C -0.535 4.535 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.513 5.513 14 C 0.039 3.961 15 C -0.116 4.116 16 C -0.084 4.084 17 H 0.067 0.933 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.120 4.120 23 C 0.042 3.958 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.264 0.736 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 5.860 8.877 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C 0.054 3.946 4 H 0.062 0.938 5 C -0.574 4.574 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.238 5.238 14 C -0.090 4.090 15 C -0.154 4.154 16 C -0.104 4.104 17 H 0.086 0.914 18 C -0.097 4.097 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.087 4.087 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.280 5.889 8.764 13.418 hybrid contribution 0.586 0.395 -0.984 1.211 sum -7.694 6.284 7.780 12.618 Atomic orbital electron populations 1.21755 0.97747 0.99126 1.01488 1.21578 0.93527 0.98576 1.00635 1.19884 0.94224 0.91222 0.89257 0.93848 1.21486 0.90606 1.34977 1.10373 0.90679 1.25103 0.94697 0.94990 0.97737 1.69922 1.08532 1.42899 1.31864 0.86950 0.80586 0.80071 0.82476 1.19962 1.21607 1.19023 1.65314 1.53690 1.01427 1.03333 1.23068 0.99451 0.95976 0.90460 1.22503 1.00345 0.95220 0.97293 1.22038 0.98572 0.94019 0.95723 0.91447 1.21816 0.99617 0.94592 0.93689 1.22456 1.02011 0.93984 0.97420 1.22492 1.00226 0.97831 0.95715 1.22353 1.00317 0.95950 0.97578 1.22214 1.00720 0.95960 0.96818 1.22720 0.99721 0.91131 0.95091 0.92221 0.94117 0.94922 0.92940 0.93175 0.92647 0.92201 0.92215 0.92602 0.91995 0.91142 0.91330 0.91938 0.91945 0.92097 0.92382 0.91863 0.92450 0.91699 0.92801 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.79 37.16 0.36 -2.22 16 2 C -0.10 -2.19 5.28 -26.73 -0.14 -2.33 16 3 C 0.16 3.75 1.80 -68.87 -0.12 3.62 16 4 H 0.04 1.07 4.75 -51.93 -0.25 0.82 16 5 C -0.54 -14.38 6.72 -34.44 -0.23 -14.61 16 6 H 0.08 2.22 6.62 -52.49 -0.35 1.87 16 7 C 0.08 2.18 5.01 -17.82 -0.09 2.09 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.87 21.39 26.97 -169.99 -4.58 16.80 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.76 56.52 0.38 -5.97 16 13 N -0.51 -10.77 4.72 -223.67 -1.06 -11.82 16 14 C 0.04 0.75 5.36 -1.74 -0.01 0.74 16 15 C -0.12 -1.90 5.82 -24.87 -0.14 -2.04 16 16 C -0.08 -1.44 2.22 -89.28 -0.20 -1.64 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.08 -1.12 2.20 -89.50 -0.20 -1.31 16 19 C -0.12 -1.66 5.48 -25.07 -0.14 -1.80 16 20 C -0.13 -1.44 6.91 -24.73 -0.17 -1.61 16 21 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 22 C -0.12 -1.47 6.10 -25.61 -0.16 -1.63 16 23 C 0.04 0.85 5.75 -2.77 -0.02 0.84 16 24 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.03 6.83 -51.93 -0.35 0.67 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 30 H 0.06 1.33 5.86 -51.93 -0.30 1.03 16 31 H 0.06 1.09 7.61 -51.93 -0.39 0.70 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.02 7.85 -51.93 -0.41 0.62 16 36 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 43 H 0.05 1.06 7.16 -51.93 -0.37 0.69 16 44 H 0.07 1.59 6.19 -51.93 -0.32 1.27 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -27.85 323.60 -9.57 -37.43 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.16 Total: 2.03 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -1.42 Total: -23.48 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.28 Total: -37.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.58 Total: 16.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.85 -9.57 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708816551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.713 kcal (2) G-P(sol) polarization free energy of solvation -27.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds