Wall clock time and date at job start Mon Mar 30 2020 07:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 H 1.09000 * 109.47307 * 303.95633 * 3 2 1 5 5 C 1.50692 * 109.47016 * 183.95543 * 3 2 1 6 6 H 1.08000 * 120.00519 * 300.84663 * 5 3 2 7 7 C 1.37877 * 120.00306 * 120.85181 * 5 3 2 8 8 N 1.31512 * 120.00809 * 172.91568 * 7 5 3 9 9 Si 1.86802 * 119.99831 * 352.91745 * 7 5 3 10 10 H 1.48499 * 109.47380 * 84.94435 * 9 7 5 11 11 H 1.48500 * 109.47455 * 204.94949 * 9 7 5 12 12 H 1.48503 * 109.47140 * 324.94893 * 9 7 5 13 13 N 1.46900 * 109.46960 * 63.95156 * 3 2 1 14 14 C 1.48807 * 111.18232 * 62.66868 * 13 3 2 15 15 C 1.54936 * 103.35132 * 159.50462 * 14 13 3 16 16 C 1.54599 * 102.91814 * 322.68412 * 15 14 13 17 17 H 1.08997 * 110.31190 * 263.03764 * 16 15 14 18 18 C 1.53010 * 110.39076 * 140.91696 * 16 15 14 19 19 C 1.54262 * 110.02878 * 181.40325 * 18 16 15 20 20 C 1.54897 * 104.19275 * 217.10418 * 19 18 16 21 21 C 1.54890 * 102.74816 * 37.94632 * 20 19 18 22 22 C 1.53873 * 110.03077 * 64.23506 * 18 16 15 23 23 C 1.47909 * 110.99989 * 179.97438 * 13 3 2 24 24 H 1.09007 * 109.46801 * 299.99442 * 1 2 3 25 25 H 1.08994 * 109.47152 * 59.99422 * 1 2 3 26 26 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46733 * 240.00486 * 2 1 3 28 28 H 1.08994 * 109.47170 * 120.00021 * 2 1 3 29 29 H 0.96995 * 120.00788 * 179.97438 * 8 7 5 30 30 H 1.08997 * 110.52520 * 41.06510 * 14 13 3 31 31 H 1.09000 * 110.83989 * 278.08715 * 14 13 3 32 32 H 1.09001 * 110.72780 * 204.33215 * 15 14 13 33 33 H 1.08991 * 110.87936 * 81.11555 * 15 14 13 34 34 H 1.08994 * 110.01324 * 302.84570 * 18 16 15 35 35 H 1.08994 * 110.48741 * 335.78294 * 19 18 16 36 36 H 1.09003 * 110.48501 * 98.43206 * 19 18 16 37 37 H 1.08997 * 110.75612 * 279.62765 * 20 19 18 38 38 H 1.08993 * 110.75348 * 156.25810 * 20 19 18 39 39 H 1.08996 * 110.48513 * 203.38426 * 21 20 19 40 40 H 1.08998 * 110.60044 * 80.78688 * 21 20 19 41 41 H 1.09001 * 110.03300 * 238.56648 * 22 18 16 42 42 H 1.09005 * 110.03150 * 359.95224 * 22 18 16 43 43 H 1.09002 * 109.91535 * 94.80333 * 23 13 3 44 44 H 1.08996 * 109.91682 * 333.71547 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6199 1.9764 -0.8524 5 6 3.5437 1.4437 -0.0980 6 1 4.1345 0.9462 0.6569 7 6 4.1655 2.0799 -1.1514 8 7 5.4749 2.2022 -1.1656 9 14 3.1480 2.7684 -2.5586 10 1 2.6690 4.1286 -2.2039 11 1 3.9836 2.8417 -3.7840 12 1 1.9825 1.8823 -2.8065 13 7 1.6298 2.1069 1.2443 14 6 2.2356 1.4457 2.4318 15 6 2.1529 2.5361 3.5294 16 6 2.4406 3.8375 2.7461 17 1 3.4910 4.1125 2.8420 18 6 1.5473 4.9724 3.2514 19 6 1.8162 6.2572 2.4409 20 6 1.7030 7.3956 3.4852 21 6 2.3498 6.7690 4.7454 22 6 1.8866 5.2978 4.7165 23 6 2.1068 3.5065 1.2801 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9123 2.6494 -1.9068 30 1 3.2733 1.1784 2.2325 31 1 1.6616 0.5652 2.7204 32 1 2.9112 2.3712 4.2950 33 1 1.1582 2.5653 3.9738 34 1 0.4986 4.6883 3.1651 35 1 2.8168 6.2336 2.0093 36 1 1.0656 6.3798 1.6601 37 1 0.6588 7.6467 3.6712 38 1 2.2608 8.2740 3.1609 39 1 1.9886 7.2650 5.6462 40 1 3.4367 6.8279 4.6882 41 1 1.0022 5.1724 5.3413 42 1 2.6870 4.6466 5.0679 43 1 1.3254 4.1744 0.9175 44 1 2.9994 3.6104 0.6633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708816551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:01 Heat of formation + Delta-G solvation = -42.123031 kcal Electronic energy + Delta-G solvation = -19898.275918 eV Core-core repulsion = 17234.260933 eV Total energy + Delta-G solvation = -2664.014985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58657 -38.58650 -35.63560 -34.15784 -31.81655 -30.55675 -29.48719 -28.52798 -27.16252 -24.63280 -23.02857 -21.86380 -21.35059 -20.43206 -20.18791 -18.98787 -17.14740 -16.75357 -16.35536 -16.12060 -15.43226 -14.96855 -14.80381 -14.35205 -14.15087 -14.00172 -13.92813 -13.46037 -13.29395 -12.99526 -12.87413 -12.78895 -12.45532 -12.07077 -11.91690 -11.86437 -11.81237 -11.71267 -11.57793 -11.48559 -11.43086 -11.23050 -11.15892 -11.04340 -10.88810 -10.73430 -8.90775 -8.33995 -6.37183 1.26820 1.29149 1.38621 2.27718 2.99495 3.58032 3.66430 3.77112 3.83845 4.07121 4.09627 4.33138 4.37027 4.54329 4.61674 4.66190 4.69001 4.72114 4.76561 4.81551 4.84993 4.89766 4.91091 4.97175 5.02523 5.08956 5.13144 5.20562 5.22360 5.22950 5.29684 5.32697 5.36284 5.47784 5.49522 5.51941 5.55478 5.62531 5.64895 5.68220 6.16825 6.41366 6.49901 6.72004 7.31144 8.82136 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020328 B = 0.007404 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.074545 B = 3780.824271 C = 4413.711079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C 0.163 3.837 4 H 0.036 0.964 5 C -0.526 4.526 6 H 0.035 0.965 7 C 0.025 3.975 8 N -0.943 5.943 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.505 5.505 14 C 0.037 3.963 15 C -0.104 4.104 16 C -0.079 4.079 17 H 0.047 0.953 18 C -0.073 4.073 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.117 4.117 23 C 0.042 3.958 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.264 0.736 30 H 0.022 0.978 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 6.595 10.094 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C 0.055 3.945 4 H 0.054 0.946 5 C -0.565 4.565 6 H 0.053 0.947 7 C -0.174 4.174 8 N -0.583 5.583 9 Si 0.753 3.247 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.228 5.228 14 C -0.091 4.091 15 C -0.142 4.142 16 C -0.098 4.098 17 H 0.066 0.934 18 C -0.091 4.091 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.086 4.086 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -11.127 6.617 9.993 16.354 hybrid contribution 1.525 0.119 -1.306 2.011 sum -9.602 6.735 8.687 14.596 Atomic orbital electron populations 1.21640 0.94722 1.00975 1.01685 1.21510 0.96141 0.96464 1.00168 1.19842 0.91519 0.93007 0.90130 0.94640 1.21661 0.92595 1.33401 1.08863 0.94679 1.25843 0.95534 0.95668 1.00351 1.70059 1.10387 1.44895 1.32951 0.86033 0.79500 0.79847 0.79356 1.19257 1.21389 1.17460 1.65295 1.53091 1.01587 1.02858 1.23096 0.97314 0.97667 0.91007 1.22474 1.02158 0.93108 0.96428 1.21967 0.98257 0.95830 0.93723 0.93414 1.21761 0.98842 0.93351 0.95166 1.22466 1.00668 0.95131 0.98141 1.22476 1.01313 0.97043 0.94813 1.22361 1.00001 0.95369 0.98340 1.22194 1.01381 0.96571 0.95259 1.22716 0.97911 0.91176 0.96844 0.91881 0.94002 0.92288 0.93953 0.93258 0.92699 0.95974 0.90545 0.91223 0.89612 0.90698 0.93525 0.92065 0.90476 0.91457 0.90278 0.92543 0.90630 0.92183 0.91888 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.79 71.98 0.70 -3.70 16 2 C -0.10 -4.29 5.28 30.60 0.16 -4.12 16 3 C 0.16 7.60 1.80 44.17 0.08 7.68 16 4 H 0.04 1.72 4.75 -2.39 -0.01 1.71 16 5 C -0.53 -29.44 6.72 25.60 0.17 -29.27 16 6 H 0.04 2.21 6.62 -2.91 -0.02 2.19 16 7 C 0.02 1.43 5.01 84.65 0.42 1.85 16 8 N -0.94 -58.67 13.96 21.45 0.30 -58.37 16 9 Si 0.93 44.83 26.97 68.60 1.85 46.68 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.25 -11.42 6.76 99.48 0.67 -10.75 16 13 N -0.50 -20.97 4.72 -861.55 -4.06 -25.03 16 14 C 0.04 1.43 5.36 86.60 0.46 1.90 16 15 C -0.10 -3.24 5.82 31.80 0.19 -3.05 16 16 C -0.08 -2.65 2.22 -9.92 -0.02 -2.68 16 17 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 18 C -0.07 -1.93 2.20 -10.07 -0.02 -1.95 16 19 C -0.13 -3.33 5.48 31.67 0.17 -3.16 16 20 C -0.12 -2.44 6.91 31.89 0.22 -2.22 16 21 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 22 C -0.12 -2.53 6.10 31.32 0.19 -2.34 16 23 C 0.04 1.74 5.75 86.43 0.50 2.23 16 24 H 0.06 2.05 7.72 -2.38 -0.02 2.03 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.00 6.83 -2.39 -0.02 1.98 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.02 1.02 5.86 -2.39 -0.01 1.01 16 31 H 0.08 2.68 7.61 -2.39 -0.02 2.66 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.32 7.86 -2.39 -0.02 2.30 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.41 7.85 -2.39 -0.02 1.39 16 36 H 0.06 1.60 8.07 -2.39 -0.02 1.58 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.37 7.30 -2.38 -0.02 1.35 16 43 H 0.06 2.45 7.16 -2.39 -0.02 2.44 16 44 H 0.02 1.05 6.19 -2.39 -0.01 1.04 16 Total: -1.00 -62.48 323.60 2.43 -60.05 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.90 Total: 17.70 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.45 Total: -41.03 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.77 Total: -83.41 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.85 Total: 46.68 kcal Total: -62.48 2.43 -60.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708816551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.929 kcal (2) G-P(sol) polarization free energy of solvation -62.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds