Wall clock time and date at job start Mon Mar 30 2020 07:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 H 1.08994 * 109.47217 * 175.15618 * 3 2 1 5 5 C 1.50703 * 109.46841 * 55.15699 * 3 2 1 6 6 H 1.08001 * 120.00369 * 239.99639 * 5 3 2 7 7 C 1.37882 * 120.00006 * 60.27906 * 5 3 2 8 8 N 1.31514 * 119.99895 * 359.72264 * 7 5 3 9 9 Si 1.86798 * 120.00250 * 179.72045 * 7 5 3 10 10 H 1.48503 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47178 * 120.00117 * 9 7 5 12 12 H 1.48494 * 109.47280 * 240.00201 * 9 7 5 13 13 N 1.46898 * 109.46968 * 295.16303 * 3 2 1 14 14 C 1.46907 * 110.99730 * 274.06375 * 13 3 2 15 15 H 1.09000 * 109.46719 * 38.81152 * 14 13 3 16 16 C 1.53001 * 109.47307 * 278.80904 * 14 13 3 17 17 C 1.53003 * 109.46801 * 158.80861 * 14 13 3 18 18 C 1.52304 * 115.91301 * 111.71285 * 17 14 13 19 19 C 1.52069 * 115.92798 * 180.02562 * 17 14 13 20 20 H 1.09001 * 117.25333 * 0.63384 * 19 17 14 21 21 C 1.52707 * 120.52049 * 150.35637 * 19 17 14 22 22 C 1.52870 * 110.15753 * 338.53422 * 21 19 17 23 23 C 1.53303 * 108.58415 * 54.51735 * 22 21 19 24 24 C 1.52071 * 114.63822 * 326.61868 * 17 14 13 25 25 H 1.08998 * 109.46745 * 184.96642 * 1 2 3 26 26 H 1.08995 * 109.47053 * 304.97464 * 1 2 3 27 27 H 1.09008 * 109.46883 * 64.97051 * 1 2 3 28 28 H 1.09001 * 109.47231 * 240.00035 * 2 1 3 29 29 H 1.09007 * 109.47206 * 119.99888 * 2 1 3 30 30 H 0.96999 * 119.99996 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00129 * 38.01932 * 13 3 2 32 32 H 1.08994 * 109.46659 * 179.97438 * 16 14 13 33 33 H 1.08998 * 109.46891 * 300.00339 * 16 14 13 34 34 H 1.09006 * 109.47037 * 59.99821 * 16 14 13 35 35 H 1.09001 * 117.53617 * 213.89999 * 18 17 14 36 36 H 1.09001 * 117.54004 * 359.15140 * 18 17 14 37 37 H 1.09008 * 109.35303 * 98.74418 * 21 19 17 38 38 H 1.09002 * 109.35722 * 218.45393 * 21 19 17 39 39 H 1.08999 * 109.62184 * 174.24825 * 22 21 19 40 40 H 1.09006 * 109.61671 * 294.78972 * 22 21 19 41 41 H 1.08996 * 109.61345 * 45.28739 * 23 22 21 42 42 H 1.08994 * 109.61524 * 165.83098 * 23 22 21 43 43 H 1.08997 * 109.27059 * 314.64217 * 24 17 14 44 44 H 1.09000 * 109.26923 * 74.10545 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0868 5 6 1.4421 2.1867 1.1661 6 1 0.8321 3.0610 0.9934 7 6 1.6787 1.7547 2.4540 8 7 2.4216 0.6901 2.6645 9 14 0.9440 2.6816 3.8998 10 1 0.1535 3.8345 3.3986 11 1 0.0586 1.7732 4.6719 12 1 2.0353 3.1737 4.7784 13 7 1.6481 2.1004 -1.2535 14 6 2.6315 1.8416 -2.3138 15 1 2.9825 0.8123 -2.2402 16 6 3.8159 2.7971 -2.1551 17 6 1.9783 2.0613 -3.6798 18 6 2.4827 3.2592 -4.4738 19 6 2.8717 1.8312 -4.8887 20 1 3.8987 1.5194 -4.6983 21 6 2.2777 1.3556 -6.2127 22 6 0.9268 0.6818 -5.9721 23 6 0.0274 1.6528 -5.1984 24 6 0.5035 1.6960 -3.7435 25 1 -0.3633 -1.0238 0.0890 26 1 -0.3633 0.5890 0.8420 27 1 -0.3633 0.4348 -0.9312 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5877 0.3860 3.5705 31 1 0.7241 1.8129 -1.5393 32 1 4.5457 2.6046 -2.9415 33 1 3.4647 3.8263 -2.2286 34 1 4.2812 2.6406 -1.1819 35 1 1.7638 3.7876 -5.0999 36 1 3.2538 3.8787 -4.0159 37 1 2.1423 2.2102 -6.8756 38 1 2.9575 0.6418 -6.6779 39 1 0.4642 0.4375 -6.9284 40 1 1.0702 -0.2279 -5.3890 41 1 0.0959 2.6465 -5.6410 42 1 -1.0044 1.3034 -5.2344 43 1 0.3502 0.7328 -3.2570 44 1 -0.0784 2.4573 -3.2239 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709091011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:26 Heat of formation + Delta-G solvation = 3.537681 kcal Electronic energy + Delta-G solvation = -19898.079830 eV Core-core repulsion = 17236.044842 eV Total energy + Delta-G solvation = -2662.034988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07432 -36.47004 -34.00824 -32.28170 -30.94266 -30.13432 -28.12240 -26.26607 -24.50048 -23.35875 -22.86134 -21.42353 -20.15108 -18.91472 -17.61015 -16.64731 -15.53853 -14.90797 -14.56324 -14.30886 -13.87292 -13.78589 -13.41863 -13.31405 -12.80983 -12.53114 -12.41020 -11.96184 -11.91993 -11.50327 -11.24071 -11.15064 -10.96127 -10.86896 -10.76782 -10.64375 -10.49610 -10.45658 -10.03076 -9.90152 -9.75787 -9.51612 -9.34997 -9.15433 -8.86699 -8.29296 -7.08091 -5.92867 -3.93738 3.33891 3.42128 3.47227 3.94554 4.48332 4.74223 4.86241 4.90968 5.09780 5.25764 5.31959 5.38360 5.39610 5.51318 5.60434 5.71284 5.73580 5.87576 5.99233 6.01844 6.03715 6.17889 6.18212 6.28302 6.33633 6.35972 6.39787 6.40225 6.44251 6.51084 6.61311 6.63364 6.69590 6.90936 6.95379 7.34591 7.38657 7.56583 7.76492 7.96401 8.37271 8.67039 8.72854 9.12974 9.69914 11.14263 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033327 B = 0.005705 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.947837 B = 4907.077411 C = 5173.519060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.117 3.883 15 H 0.033 0.967 16 C -0.137 4.137 17 C -0.095 4.095 18 C -0.179 4.179 19 C -0.151 4.151 20 H 0.099 0.901 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.085 4.085 25 H 0.022 0.978 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.009 0.991 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.329 0.671 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 0.517 -15.234 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.313 5.313 14 C 0.006 3.994 15 H 0.051 0.949 16 C -0.195 4.195 17 C -0.096 4.096 18 C -0.216 4.216 19 C -0.170 4.170 20 H 0.117 0.883 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.122 4.122 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.041 1.037 -14.898 14.970 hybrid contribution -0.449 -0.567 0.726 1.025 sum -1.490 0.470 -14.172 14.258 Atomic orbital electron populations 1.21604 0.97812 0.98591 1.00707 1.22103 0.94892 1.01381 1.00113 1.19229 0.95899 0.88369 0.85845 0.94952 1.21122 1.30141 1.11374 0.89655 0.92075 1.24915 0.95618 0.95201 0.98716 1.69896 1.39128 1.24091 1.20603 0.86548 0.78897 0.79911 0.82698 1.19787 1.21315 1.21268 1.60908 1.03835 1.63236 1.03337 1.20942 0.93359 0.96601 0.88481 0.94915 1.21898 0.96688 1.00076 1.00807 1.21183 0.94478 1.01823 0.92092 1.23379 1.03681 0.90729 1.03778 1.22318 0.99486 0.99952 0.95222 0.88321 1.21027 0.96333 0.99735 0.95233 1.21573 0.95591 0.98851 0.99708 1.21657 0.98654 0.99499 0.95839 1.20860 0.93370 1.01859 0.96134 0.95844 0.91267 0.95471 0.97202 0.89019 0.93279 0.85031 0.93968 0.92057 0.92371 0.89528 0.88184 0.92066 0.92166 0.92466 0.91750 0.91961 0.92077 0.91410 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.15 -3.44 5.50 -26.73 -0.15 -3.58 16 3 C 0.21 5.30 2.14 -68.86 -0.15 5.15 16 4 H 0.03 0.89 6.84 -51.93 -0.36 0.54 16 5 C -0.48 -13.12 7.26 -34.44 -0.25 -13.37 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 8 N -0.90 -25.47 11.38 55.43 0.63 -24.84 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.68 -14.33 6.01 -100.95 -0.61 -14.94 16 14 C 0.12 2.12 2.68 -67.71 -0.18 1.94 16 15 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 16 C -0.14 -2.38 7.91 37.16 0.29 -2.09 16 17 C -0.10 -1.42 2.45 -155.81 -0.38 -1.81 16 18 C -0.18 -2.39 8.58 -26.72 -0.23 -2.62 16 19 C -0.15 -1.96 5.54 -90.88 -0.50 -2.46 16 20 H 0.10 1.29 7.48 -51.93 -0.39 0.90 16 21 C -0.09 -0.94 5.81 -26.95 -0.16 -1.09 16 22 C -0.12 -1.30 5.92 -26.64 -0.16 -1.46 16 23 C -0.12 -1.37 5.71 -26.50 -0.15 -1.52 16 24 C -0.08 -1.20 4.03 -27.13 -0.11 -1.31 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.63 6.88 -51.93 -0.36 1.27 16 27 H 0.03 0.52 6.62 -51.92 -0.34 0.18 16 28 H 0.01 0.21 7.40 -51.93 -0.38 -0.18 16 29 H 0.09 2.44 6.23 -51.93 -0.32 2.11 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.63 3.87 -39.29 -0.15 6.47 16 32 H 0.04 0.62 6.88 -51.93 -0.36 0.27 16 33 H 0.06 1.05 6.87 -51.93 -0.36 0.70 16 34 H 0.06 1.13 7.16 -51.93 -0.37 0.76 16 35 H 0.09 1.08 7.14 -51.93 -0.37 0.71 16 36 H 0.10 1.36 5.60 -51.93 -0.29 1.07 16 37 H 0.06 0.62 8.04 -51.92 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 41 H 0.06 0.70 7.00 -51.93 -0.36 0.33 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.03 7.82 -51.93 -0.41 0.62 16 44 H 0.07 1.07 7.57 -51.93 -0.39 0.68 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -27.40 319.76 -9.70 -37.10 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.66 Total: 6.66 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.87 Total: -25.24 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.02 Total: -39.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.40 -9.70 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709091011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.635 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds