Wall clock time and date at job start Mon Mar 30 2020 07:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47312 * 2 1 4 4 H 1.08994 * 109.47217 * 175.15618 * 3 2 1 5 5 C 1.50703 * 109.46841 * 55.15699 * 3 2 1 6 6 H 1.08001 * 120.00369 * 239.99639 * 5 3 2 7 7 C 1.37882 * 120.00006 * 60.27906 * 5 3 2 8 8 N 1.31514 * 119.99895 * 359.72264 * 7 5 3 9 9 Si 1.86798 * 120.00250 * 179.72045 * 7 5 3 10 10 H 1.48503 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47178 * 120.00117 * 9 7 5 12 12 H 1.48494 * 109.47280 * 240.00201 * 9 7 5 13 13 N 1.46898 * 109.46968 * 295.16303 * 3 2 1 14 14 C 1.46907 * 110.99730 * 274.06375 * 13 3 2 15 15 H 1.09000 * 109.46719 * 38.81152 * 14 13 3 16 16 C 1.53001 * 109.47307 * 278.80904 * 14 13 3 17 17 C 1.53003 * 109.46801 * 158.80861 * 14 13 3 18 18 C 1.52304 * 115.91301 * 111.71285 * 17 14 13 19 19 C 1.52069 * 115.92798 * 180.02562 * 17 14 13 20 20 H 1.09001 * 117.25333 * 0.63384 * 19 17 14 21 21 C 1.52707 * 120.52049 * 150.35637 * 19 17 14 22 22 C 1.52870 * 110.15753 * 338.53422 * 21 19 17 23 23 C 1.53303 * 108.58415 * 54.51735 * 22 21 19 24 24 C 1.52071 * 114.63822 * 326.61868 * 17 14 13 25 25 H 1.08998 * 109.46745 * 184.96642 * 1 2 3 26 26 H 1.08995 * 109.47053 * 304.97464 * 1 2 3 27 27 H 1.09008 * 109.46883 * 64.97051 * 1 2 3 28 28 H 1.09001 * 109.47231 * 240.00035 * 2 1 3 29 29 H 1.09007 * 109.47206 * 119.99888 * 2 1 3 30 30 H 0.96999 * 119.99996 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00129 * 38.01932 * 13 3 2 32 32 H 1.08994 * 109.46659 * 179.97438 * 16 14 13 33 33 H 1.08998 * 109.46891 * 300.00339 * 16 14 13 34 34 H 1.09006 * 109.47037 * 59.99821 * 16 14 13 35 35 H 1.09001 * 117.53617 * 213.89999 * 18 17 14 36 36 H 1.09001 * 117.54004 * 359.15140 * 18 17 14 37 37 H 1.09008 * 109.35303 * 98.74418 * 21 19 17 38 38 H 1.09002 * 109.35722 * 218.45393 * 21 19 17 39 39 H 1.08999 * 109.62184 * 174.24825 * 22 21 19 40 40 H 1.09006 * 109.61671 * 294.78972 * 22 21 19 41 41 H 1.08996 * 109.61345 * 45.28739 * 23 22 21 42 42 H 1.08994 * 109.61524 * 165.83098 * 23 22 21 43 43 H 1.08997 * 109.27059 * 314.64217 * 24 17 14 44 44 H 1.09000 * 109.26923 * 74.10545 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0868 5 6 1.4421 2.1867 1.1661 6 1 0.8321 3.0610 0.9934 7 6 1.6787 1.7547 2.4540 8 7 2.4216 0.6901 2.6645 9 14 0.9440 2.6816 3.8998 10 1 0.1535 3.8345 3.3986 11 1 0.0586 1.7732 4.6719 12 1 2.0353 3.1737 4.7784 13 7 1.6481 2.1004 -1.2535 14 6 2.6315 1.8416 -2.3138 15 1 2.9825 0.8123 -2.2402 16 6 3.8159 2.7971 -2.1551 17 6 1.9783 2.0613 -3.6798 18 6 2.4827 3.2592 -4.4738 19 6 2.8717 1.8312 -4.8887 20 1 3.8987 1.5194 -4.6983 21 6 2.2777 1.3556 -6.2127 22 6 0.9268 0.6818 -5.9721 23 6 0.0274 1.6528 -5.1984 24 6 0.5035 1.6960 -3.7435 25 1 -0.3633 -1.0238 0.0890 26 1 -0.3633 0.5890 0.8420 27 1 -0.3633 0.4348 -0.9312 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5877 0.3860 3.5705 31 1 0.7241 1.8129 -1.5393 32 1 4.5457 2.6046 -2.9415 33 1 3.4647 3.8263 -2.2286 34 1 4.2812 2.6406 -1.1819 35 1 1.7638 3.7876 -5.0999 36 1 3.2538 3.8787 -4.0159 37 1 2.1423 2.2102 -6.8756 38 1 2.9575 0.6418 -6.6779 39 1 0.4642 0.4375 -6.9284 40 1 1.0702 -0.2279 -5.3890 41 1 0.0959 2.6465 -5.6410 42 1 -1.0044 1.3034 -5.2344 43 1 0.3502 0.7328 -3.2570 44 1 -0.0784 2.4573 -3.2239 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709091011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:25 Heat of formation + Delta-G solvation = -10.410212 kcal Electronic energy + Delta-G solvation = -19898.684656 eV Core-core repulsion = 17236.044842 eV Total energy + Delta-G solvation = -2662.639814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22608 -38.16882 -35.39571 -33.93310 -32.55125 -31.30500 -29.71217 -28.11183 -25.88034 -24.99621 -24.19784 -22.46824 -21.57086 -20.54618 -18.80900 -18.31632 -17.23441 -16.76355 -16.15312 -15.38597 -15.24068 -14.94555 -14.77388 -14.50735 -14.42387 -14.19843 -14.06891 -13.51738 -13.06842 -12.92752 -12.82218 -12.64757 -12.51245 -12.40493 -12.38417 -12.05858 -11.80144 -11.72631 -11.70527 -11.49422 -11.40706 -10.96771 -10.92063 -10.46816 -10.41952 -10.30677 -8.83888 -8.04358 -6.12492 1.41188 1.43878 1.55257 2.46040 2.84693 3.24325 3.63885 3.75142 3.90113 3.96968 4.06017 4.26860 4.34670 4.39378 4.47017 4.51870 4.57030 4.62858 4.66641 4.73961 4.77895 4.85437 4.89437 5.00270 5.04249 5.08217 5.11415 5.17427 5.28325 5.30376 5.37578 5.40408 5.43754 5.45042 5.47320 5.53317 5.57305 5.69396 5.74328 5.88557 6.35658 6.75408 6.94064 7.03975 7.55638 9.01377 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.033327 B = 0.005705 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.947837 B = 4907.077411 C = 5173.519060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.495 4.495 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.116 3.884 15 H 0.011 0.989 16 C -0.130 4.130 17 C -0.114 4.114 18 C -0.171 4.171 19 C -0.139 4.139 20 H 0.096 0.904 21 C -0.084 4.084 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.083 4.083 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.335 0.665 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 1.029 -17.261 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.315 5.315 14 C 0.006 3.994 15 H 0.029 0.971 16 C -0.187 4.187 17 C -0.114 4.114 18 C -0.208 4.208 19 C -0.158 4.158 20 H 0.114 0.886 21 C -0.122 4.122 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.121 4.121 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.001 1.552 -16.941 17.129 hybrid contribution -0.099 -0.731 1.334 1.524 sum -2.101 0.822 -15.607 15.769 Atomic orbital electron populations 1.21477 0.95865 0.99597 1.00792 1.21944 0.96546 1.00323 0.98944 1.18943 0.93425 0.89143 0.87113 0.98711 1.21314 1.30035 1.11211 0.90833 0.93091 1.25605 0.95965 0.95925 1.01083 1.70029 1.40051 1.25226 1.21040 0.85606 0.78155 0.78838 0.79628 1.19345 1.20733 1.21122 1.60807 1.04835 1.62735 1.03098 1.20967 0.93150 0.95532 0.89764 0.97067 1.21839 0.96898 0.99993 0.99986 1.21066 0.95172 1.04363 0.90806 1.23430 1.03569 0.90710 1.03086 1.22410 0.98902 0.99390 0.95088 0.88578 1.21074 0.96447 1.00616 0.94021 1.21573 0.95565 0.98042 1.00417 1.21633 0.99326 1.00321 0.93777 1.20814 0.92718 1.00475 0.98049 0.93922 0.93466 0.93418 0.96297 0.92125 0.93295 0.84416 0.91287 0.91839 0.95498 0.88014 0.88526 0.90556 0.91001 0.90314 0.93020 0.91068 0.91004 0.92990 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.40 71.98 0.68 -4.45 16 2 C -0.14 -6.68 5.50 30.59 0.17 -6.51 16 3 C 0.22 11.38 2.14 44.17 0.09 11.48 16 4 H -0.01 -0.29 6.84 -2.39 -0.02 -0.31 16 5 C -0.50 -27.48 7.26 25.60 0.19 -27.30 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.67 5.30 84.66 0.45 1.12 16 8 N -0.92 -53.73 11.38 21.45 0.24 -53.48 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.68 -29.30 6.01 -473.29 -2.84 -32.14 16 14 C 0.12 4.27 2.68 44.92 0.12 4.39 16 15 H 0.01 0.47 7.17 -2.39 -0.02 0.45 16 16 C -0.13 -4.56 7.91 71.98 0.57 -3.99 16 17 C -0.11 -3.27 2.45 -53.02 -0.13 -3.40 16 18 C -0.17 -4.19 8.58 30.60 0.26 -3.93 16 19 C -0.14 -3.28 5.54 -10.96 -0.06 -3.34 16 20 H 0.10 2.32 7.48 -2.39 -0.02 2.30 16 21 C -0.08 -1.55 5.81 30.45 0.18 -1.37 16 22 C -0.12 -2.21 5.92 30.65 0.18 -2.03 16 23 C -0.11 -2.29 5.71 30.74 0.18 -2.12 16 24 C -0.08 -2.24 4.03 30.34 0.12 -2.12 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 2.22 6.88 -2.39 -0.02 2.20 16 27 H 0.05 1.81 6.62 -2.38 -0.02 1.79 16 28 H 0.02 0.85 7.40 -2.39 -0.02 0.83 16 29 H 0.06 3.33 6.23 -2.38 -0.01 3.31 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.33 13.56 3.87 -89.70 -0.35 13.21 16 32 H 0.07 2.01 6.88 -2.39 -0.02 1.99 16 33 H 0.06 2.18 6.87 -2.39 -0.02 2.16 16 34 H 0.03 1.08 7.16 -2.38 -0.02 1.06 16 35 H 0.10 2.20 7.14 -2.39 -0.02 2.18 16 36 H 0.10 2.43 5.60 -2.39 -0.01 2.42 16 37 H 0.08 1.22 8.04 -2.38 -0.02 1.20 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.10 8.04 -2.38 -0.02 1.08 16 41 H 0.07 1.34 7.00 -2.39 -0.02 1.32 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 44 H 0.06 1.73 7.57 -2.39 -0.02 1.72 16 Total: -1.00 -59.87 319.76 3.03 -56.83 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.61 Total: 25.83 kcal Atomic # 6 Polarization: -46.56 SS G_CDS: 2.99 Total: -43.57 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.60 Total: -85.63 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -59.87 3.03 -56.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709091011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.420 kcal (2) G-P(sol) polarization free energy of solvation -59.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds