Wall clock time and date at job start Mon Mar 30 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 H 1.08998 * 110.06680 * 55.21259 * 3 2 1 5 5 C 1.53989 * 109.92186 * 176.41948 * 3 2 1 6 6 H 1.08996 * 110.31209 * 239.59700 * 5 3 2 7 7 C 1.50709 * 110.30767 * 1.66159 * 5 3 2 8 8 H 1.08001 * 119.99528 * 4.17934 * 7 5 3 9 9 C 1.37868 * 120.00387 * 184.17601 * 7 5 3 10 10 N 1.31514 * 119.99740 * 355.17041 * 9 7 5 11 11 Si 1.86798 * 120.00390 * 175.16976 * 9 7 5 12 12 H 1.48491 * 109.47255 * 94.99524 * 11 9 7 13 13 H 1.48501 * 109.47152 * 215.00219 * 11 9 7 14 14 H 1.48505 * 109.46650 * 334.99731 * 11 9 7 15 15 C 1.54586 * 105.14196 * 120.57695 * 5 3 2 16 16 C 1.54936 * 102.92151 * 21.96165 * 15 5 3 17 17 N 1.47905 * 109.91783 * 294.01049 * 3 2 1 18 18 C 1.46897 * 110.99881 * 94.80086 * 17 3 2 19 19 C 1.53006 * 109.47284 * 61.93217 * 18 17 3 20 20 C 1.53001 * 109.47037 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47167 * 299.99746 * 20 19 18 22 22 C 1.53001 * 109.46966 * 60.00535 * 21 20 19 23 23 C 1.52999 * 109.47348 * 181.93385 * 18 17 3 24 24 H 1.08998 * 109.47634 * 306.76253 * 1 2 3 25 25 H 1.09000 * 109.47373 * 66.75876 * 1 2 3 26 26 H 1.08999 * 109.47641 * 186.75888 * 1 2 3 27 27 H 1.09003 * 109.46793 * 240.00125 * 2 1 3 28 28 H 1.09002 * 109.47138 * 120.00504 * 2 1 3 29 29 H 0.97006 * 120.00006 * 180.02562 * 10 9 7 30 30 H 1.09004 * 110.72533 * 140.31835 * 15 5 3 31 31 H 1.09001 * 110.73014 * 263.42683 * 15 5 3 32 32 H 1.09007 * 110.66944 * 204.14710 * 16 15 5 33 33 H 1.08996 * 110.66910 * 81.01882 * 16 15 5 34 34 H 1.08997 * 109.47413 * 301.93257 * 18 17 3 35 35 H 1.08993 * 109.47322 * 299.99919 * 19 18 17 36 36 H 1.09002 * 109.46703 * 60.00176 * 19 18 17 37 37 H 1.08997 * 109.47463 * 60.00160 * 20 19 18 38 38 H 1.08996 * 109.46846 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47734 * 300.00445 * 21 20 19 40 40 H 1.08996 * 109.47247 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47252 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47497 * 59.99632 * 22 21 20 43 43 H 1.09009 * 109.46986 * 299.99915 * 23 18 17 44 44 H 1.09003 * 109.47262 * 59.99611 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6140 1.9898 0.8408 5 6 3.5772 1.4554 0.0904 6 1 3.8993 1.9941 0.9815 7 6 4.1119 0.0465 0.1103 8 1 3.4370 -0.7888 -0.0045 9 6 5.4625 -0.1760 0.2749 10 7 6.2958 0.8405 0.3193 11 14 6.1089 -1.9213 0.4349 12 1 6.5512 -2.4093 -0.8960 13 1 7.2578 -1.9393 1.3757 14 1 5.0315 -2.8026 0.9524 15 6 4.0505 2.1910 -1.1842 16 6 2.8038 3.0160 -1.5912 17 7 1.6745 2.1061 -1.2702 18 6 0.4185 2.8549 -1.1305 19 6 0.5943 3.9548 -0.0815 20 6 -0.7138 4.7351 0.0635 21 6 -1.0826 5.3665 -1.2804 22 6 -1.2585 4.2667 -2.3294 23 6 0.0489 3.4862 -2.4743 24 1 -0.3634 0.6150 0.8232 25 1 -0.3634 0.4055 -0.9443 26 1 -0.3634 -1.0205 0.1209 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 7.2461 0.6839 0.4348 30 1 4.8914 2.8476 -0.9609 31 1 4.3162 1.4781 -1.9648 32 1 2.8239 3.2431 -2.6572 33 1 2.7394 3.9314 -1.0030 34 1 -0.3756 2.1773 -0.8169 35 1 0.8575 3.5051 0.8758 36 1 1.3883 4.6324 -0.3952 37 1 -1.5081 4.0577 0.3770 38 1 -0.5883 5.5188 0.8105 39 1 -0.2883 6.0439 -1.5939 40 1 -2.0142 5.9227 -1.1770 41 1 -1.5218 4.7164 -3.2868 42 1 -2.0528 3.5893 -2.0160 43 1 0.8430 4.1640 -2.7880 44 1 -0.0764 2.7027 -3.2217 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:33 Heat of formation + Delta-G solvation = -15.024209 kcal Electronic energy + Delta-G solvation = -20188.839669 eV Core-core repulsion = 17525.999777 eV Total energy + Delta-G solvation = -2662.839892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.65477 -36.90177 -33.08671 -32.46880 -30.92450 -30.61526 -27.66446 -27.10174 -24.28708 -22.84664 -22.49310 -21.26032 -20.33876 -18.84603 -18.52109 -16.01358 -15.83250 -14.65143 -14.55948 -14.29403 -14.11530 -13.99113 -13.58144 -13.19778 -12.65636 -12.42199 -12.23461 -12.07157 -11.84425 -11.63094 -11.38792 -11.15972 -10.99369 -10.86976 -10.61723 -10.39688 -10.36104 -10.27357 -10.15186 -10.03757 -9.73551 -9.59613 -9.40870 -9.02605 -8.51069 -8.29532 -7.49500 -5.94705 -3.94468 3.34581 3.41881 3.45046 4.49947 4.62258 4.83565 4.92296 5.14114 5.33927 5.40279 5.40789 5.59441 5.65791 5.69225 5.75736 5.81329 5.81549 5.90792 6.01064 6.06935 6.10361 6.14648 6.19726 6.27548 6.29068 6.34477 6.39448 6.45130 6.54722 6.61749 6.69373 6.72503 6.93474 7.03247 7.21764 7.29449 7.37976 7.60034 7.71263 7.98858 7.99308 8.13859 8.53548 9.06956 9.68990 11.15851 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.006092 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.085528 B = 4595.157339 C = 4934.213745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C 0.071 3.929 4 H 0.033 0.967 5 C 0.045 3.955 6 H 0.027 0.973 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.274 1.274 15 C -0.093 4.093 16 C 0.024 3.976 17 N -0.503 5.503 18 C 0.071 3.929 19 C -0.158 4.158 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.108 4.108 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.257 0.743 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 6.483 -2.698 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.129 4.129 3 C -0.037 4.037 4 H 0.051 0.949 5 C 0.026 3.974 6 H 0.045 0.955 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.714 3.286 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.131 4.131 16 C -0.104 4.104 17 N -0.226 5.226 18 C -0.038 4.038 19 C -0.196 4.196 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.146 4.146 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.800 6.119 -3.090 14.520 hybrid contribution 0.637 -0.201 0.767 1.017 sum -12.162 5.918 -2.323 13.724 Atomic orbital electron populations 1.22012 0.98792 0.99809 1.00599 1.21491 0.91998 0.96823 1.02547 1.22533 0.98701 0.93865 0.88580 0.94900 1.19490 0.87502 0.96519 0.93893 0.95453 1.21523 0.92363 0.92216 1.48806 0.90916 1.25013 0.97244 0.96423 0.95474 1.69997 1.02754 1.29895 1.50494 0.86673 0.78561 0.85551 0.77776 1.20949 1.21465 1.19884 1.22415 0.93759 0.97312 0.99656 1.23391 0.93030 0.94916 0.99037 1.64867 1.01024 1.25332 1.31356 1.21963 0.94536 0.93477 0.93830 1.22294 0.97591 0.99025 1.00736 1.21459 0.97767 0.99108 0.96806 1.21533 1.00769 0.97779 0.95514 1.21508 0.98050 0.97493 0.98446 1.21519 0.96570 0.99078 0.97470 0.94287 0.92761 0.94176 0.91062 0.91478 0.93330 0.92737 0.92204 0.92207 0.94635 0.89947 0.91593 0.91517 0.92323 0.92604 0.92253 0.92588 0.92365 0.92241 0.92218 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.59 37.16 0.32 -2.19 16 2 C -0.09 -1.79 4.10 -26.73 -0.11 -1.90 16 3 C 0.07 1.45 2.38 -66.65 -0.16 1.29 16 4 H 0.03 0.67 5.62 -51.93 -0.29 0.37 16 5 C 0.04 1.11 2.84 -90.42 -0.26 0.85 16 6 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.51 -13.63 7.43 -34.44 -0.26 -13.88 16 8 H 0.07 1.89 4.74 -52.49 -0.25 1.64 16 9 C 0.06 1.64 5.39 -17.82 -0.10 1.54 16 10 N -0.89 -25.68 12.74 55.43 0.71 -24.98 16 11 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C -0.09 -2.17 5.89 -24.88 -0.15 -2.31 16 16 C 0.02 0.46 5.40 -1.90 -0.01 0.45 16 17 N -0.50 -9.36 4.77 -214.68 -1.03 -10.38 16 18 C 0.07 1.09 1.93 -67.71 -0.13 0.96 16 19 C -0.16 -2.30 4.53 -26.73 -0.12 -2.42 16 20 C -0.11 -1.35 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.12 -1.30 5.92 -26.76 -0.16 -1.46 16 23 C -0.11 -1.46 5.16 -26.76 -0.14 -1.60 16 24 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.05 0.86 6.36 -51.93 -0.33 0.53 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.53 7.19 -51.93 -0.37 1.16 16 28 H 0.07 1.40 7.03 -51.93 -0.37 1.03 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 32 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 33 H 0.04 0.66 5.50 -51.93 -0.29 0.37 16 34 H 0.08 1.27 5.27 -51.93 -0.27 1.00 16 35 H 0.07 1.06 6.08 -51.93 -0.32 0.74 16 36 H 0.07 1.03 5.98 -51.93 -0.31 0.72 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.83 7.06 -51.92 -0.37 0.47 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -27.22 313.98 -9.94 -37.16 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.75 Total: 0.78 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.58 Total: -23.61 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.32 Total: -35.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.22 -9.94 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.138 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds