Wall clock time and date at job start Mon Mar 30 2020 07:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 H 1.08998 * 110.06680 * 55.21259 * 3 2 1 5 5 C 1.53989 * 109.92186 * 176.41948 * 3 2 1 6 6 H 1.08996 * 110.31209 * 239.59700 * 5 3 2 7 7 C 1.50709 * 110.30767 * 1.66159 * 5 3 2 8 8 H 1.08001 * 119.99528 * 4.17934 * 7 5 3 9 9 C 1.37868 * 120.00387 * 184.17601 * 7 5 3 10 10 N 1.31514 * 119.99740 * 355.17041 * 9 7 5 11 11 Si 1.86798 * 120.00390 * 175.16976 * 9 7 5 12 12 H 1.48491 * 109.47255 * 94.99524 * 11 9 7 13 13 H 1.48501 * 109.47152 * 215.00219 * 11 9 7 14 14 H 1.48505 * 109.46650 * 334.99731 * 11 9 7 15 15 C 1.54586 * 105.14196 * 120.57695 * 5 3 2 16 16 C 1.54936 * 102.92151 * 21.96165 * 15 5 3 17 17 N 1.47905 * 109.91783 * 294.01049 * 3 2 1 18 18 C 1.46897 * 110.99881 * 94.80086 * 17 3 2 19 19 C 1.53006 * 109.47284 * 61.93217 * 18 17 3 20 20 C 1.53001 * 109.47037 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47167 * 299.99746 * 20 19 18 22 22 C 1.53001 * 109.46966 * 60.00535 * 21 20 19 23 23 C 1.52999 * 109.47348 * 181.93385 * 18 17 3 24 24 H 1.08998 * 109.47634 * 306.76253 * 1 2 3 25 25 H 1.09000 * 109.47373 * 66.75876 * 1 2 3 26 26 H 1.08999 * 109.47641 * 186.75888 * 1 2 3 27 27 H 1.09003 * 109.46793 * 240.00125 * 2 1 3 28 28 H 1.09002 * 109.47138 * 120.00504 * 2 1 3 29 29 H 0.97006 * 120.00006 * 180.02562 * 10 9 7 30 30 H 1.09004 * 110.72533 * 140.31835 * 15 5 3 31 31 H 1.09001 * 110.73014 * 263.42683 * 15 5 3 32 32 H 1.09007 * 110.66944 * 204.14710 * 16 15 5 33 33 H 1.08996 * 110.66910 * 81.01882 * 16 15 5 34 34 H 1.08997 * 109.47413 * 301.93257 * 18 17 3 35 35 H 1.08993 * 109.47322 * 299.99919 * 19 18 17 36 36 H 1.09002 * 109.46703 * 60.00176 * 19 18 17 37 37 H 1.08997 * 109.47463 * 60.00160 * 20 19 18 38 38 H 1.08996 * 109.46846 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.47734 * 300.00445 * 21 20 19 40 40 H 1.08996 * 109.47247 * 180.02562 * 21 20 19 41 41 H 1.09003 * 109.47252 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47497 * 59.99632 * 22 21 20 43 43 H 1.09009 * 109.46986 * 299.99915 * 23 18 17 44 44 H 1.09003 * 109.47262 * 59.99611 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6140 1.9898 0.8408 5 6 3.5772 1.4554 0.0904 6 1 3.8993 1.9941 0.9815 7 6 4.1119 0.0465 0.1103 8 1 3.4370 -0.7888 -0.0045 9 6 5.4625 -0.1760 0.2749 10 7 6.2958 0.8405 0.3193 11 14 6.1089 -1.9213 0.4349 12 1 6.5512 -2.4093 -0.8960 13 1 7.2578 -1.9393 1.3757 14 1 5.0315 -2.8026 0.9524 15 6 4.0505 2.1910 -1.1842 16 6 2.8038 3.0160 -1.5912 17 7 1.6745 2.1061 -1.2702 18 6 0.4185 2.8549 -1.1305 19 6 0.5943 3.9548 -0.0815 20 6 -0.7138 4.7351 0.0635 21 6 -1.0826 5.3665 -1.2804 22 6 -1.2585 4.2667 -2.3294 23 6 0.0489 3.4862 -2.4743 24 1 -0.3634 0.6150 0.8232 25 1 -0.3634 0.4055 -0.9443 26 1 -0.3634 -1.0205 0.1209 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 7.2461 0.6839 0.4348 30 1 4.8914 2.8476 -0.9609 31 1 4.3162 1.4781 -1.9648 32 1 2.8239 3.2431 -2.6572 33 1 2.7394 3.9314 -1.0030 34 1 -0.3756 2.1773 -0.8169 35 1 0.8575 3.5051 0.8758 36 1 1.3883 4.6324 -0.3952 37 1 -1.5081 4.0577 0.3770 38 1 -0.5883 5.5188 0.8105 39 1 -0.2883 6.0439 -1.5939 40 1 -2.0142 5.9227 -1.1770 41 1 -1.5218 4.7164 -3.2868 42 1 -2.0528 3.5893 -2.0160 43 1 0.8430 4.1640 -2.7880 44 1 -0.0764 2.7027 -3.2217 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:32 Heat of formation + Delta-G solvation = -29.424726 kcal Electronic energy + Delta-G solvation = -20189.464122 eV Core-core repulsion = 17525.999777 eV Total energy + Delta-G solvation = -2663.464345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.07268 -38.22968 -34.91671 -34.04944 -32.56502 -31.63686 -29.27065 -28.60267 -26.18082 -24.38117 -23.56692 -22.50840 -21.84392 -20.53140 -19.86130 -17.85460 -17.37870 -16.51684 -15.92867 -15.76459 -15.50159 -15.06562 -14.85239 -14.56780 -14.24204 -13.97325 -13.72558 -13.31037 -13.24727 -13.09503 -12.93482 -12.73611 -12.57075 -12.29821 -12.08394 -11.96755 -11.83133 -11.70418 -11.50978 -11.45258 -11.23231 -11.08122 -10.85183 -10.74063 -10.51949 -10.38545 -9.00387 -8.07586 -6.12757 1.41590 1.42921 1.53002 2.46816 3.21666 3.25604 3.79468 3.92123 4.05147 4.21678 4.23639 4.33999 4.40425 4.43656 4.46739 4.55038 4.64022 4.67807 4.69955 4.72918 4.83143 4.83879 4.89170 5.04637 5.12391 5.20044 5.20587 5.27237 5.30085 5.30855 5.33692 5.38388 5.42110 5.48275 5.55371 5.60738 5.64912 5.73199 5.83731 5.91377 6.30782 6.43107 6.54740 6.96249 7.53714 9.02919 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.006092 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.085528 B = 4595.157339 C = 4934.213745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C 0.080 3.920 4 H 0.037 0.963 5 C 0.036 3.964 6 H -0.010 1.010 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.006 3.994 10 N -0.926 5.926 11 Si 0.949 3.051 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.264 1.264 15 C -0.086 4.086 16 C 0.039 3.961 17 N -0.507 5.507 18 C 0.070 3.930 19 C -0.154 4.154 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.256 0.744 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 6.580 -3.258 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.028 4.028 4 H 0.055 0.945 5 C 0.017 3.983 6 H 0.008 0.992 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.192 4.192 10 N -0.567 5.567 11 Si 0.775 3.225 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.125 4.125 16 C -0.089 4.089 17 N -0.230 5.230 18 C -0.038 4.038 19 C -0.193 4.193 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.441 6.215 -3.652 17.041 hybrid contribution 1.460 -0.202 0.956 1.757 sum -13.981 6.013 -2.696 15.456 Atomic orbital electron populations 1.21875 0.95449 1.01270 1.01386 1.21355 0.94899 0.95531 1.00710 1.22328 0.95614 0.95013 0.89850 0.94535 1.19479 0.90765 0.95335 0.92749 0.99156 1.21910 0.92614 0.93381 1.47744 0.90436 1.25795 0.97708 1.00116 0.95552 1.70134 1.02821 1.31863 1.51857 0.85680 0.77997 0.81178 0.77652 1.20677 1.21424 1.18822 1.22180 0.95029 0.96839 0.98420 1.23228 0.91122 0.94493 1.00041 1.64862 1.02068 1.25973 1.30080 1.22084 0.92632 0.93613 0.95472 1.22227 0.99020 0.98756 0.99311 1.21440 0.96140 0.99152 0.97984 1.21533 1.01694 0.97682 0.94469 1.21486 0.96574 0.97415 0.99489 1.21497 0.97899 0.99038 0.95878 0.93203 0.92099 0.92506 0.93101 0.93099 0.93545 0.95064 0.94691 0.90579 0.93800 0.89341 0.93476 0.92631 0.91520 0.91852 0.92592 0.90490 0.90749 0.91439 0.92860 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.59 71.98 0.62 -3.66 16 2 C -0.09 -3.40 4.10 30.59 0.13 -3.28 16 3 C 0.08 3.31 2.38 45.05 0.11 3.41 16 4 H 0.04 1.49 5.62 -2.39 -0.01 1.47 16 5 C 0.04 1.83 2.84 -10.66 -0.03 1.80 16 6 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 7 C -0.52 -28.47 7.43 25.60 0.19 -28.28 16 8 H 0.08 4.11 4.74 -2.91 -0.01 4.10 16 9 C 0.01 0.33 5.39 84.65 0.46 0.79 16 10 N -0.93 -55.33 12.74 21.44 0.27 -55.06 16 11 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 15 C -0.09 -4.19 5.89 31.80 0.19 -4.00 16 16 C 0.04 1.49 5.40 86.65 0.47 1.96 16 17 N -0.51 -18.53 4.77 -833.11 -3.98 -22.50 16 18 C 0.07 2.02 1.93 44.92 0.09 2.11 16 19 C -0.15 -4.27 4.53 30.60 0.14 -4.13 16 20 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 21 C -0.12 -2.10 5.92 30.59 0.18 -1.91 16 22 C -0.11 -2.06 5.92 30.58 0.18 -1.88 16 23 C -0.11 -2.56 5.16 30.58 0.16 -2.41 16 24 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 25 H 0.06 1.76 6.36 -2.39 -0.02 1.74 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 2.18 7.19 -2.39 -0.02 2.16 16 28 H 0.05 2.12 7.03 -2.39 -0.02 2.11 16 29 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 30 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.03 1.83 7.86 -2.39 -0.02 1.81 16 32 H 0.08 2.69 7.69 -2.38 -0.02 2.67 16 33 H 0.04 1.63 5.50 -2.39 -0.01 1.61 16 34 H 0.09 2.47 5.27 -2.39 -0.01 2.46 16 35 H 0.05 1.47 6.08 -2.39 -0.01 1.46 16 36 H 0.06 1.65 5.98 -2.39 -0.01 1.64 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.37 7.06 -2.38 -0.02 1.35 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -60.22 313.98 2.32 -57.90 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.95 Total: 14.68 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 3.05 Total: -41.60 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.70 Total: -77.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.22 2.32 -57.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.473 kcal (2) G-P(sol) polarization free energy of solvation -60.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds