Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 H 1.09003 * 109.91177 * 303.90442 * 3 2 1 5 5 C 1.53992 * 110.08579 * 182.69074 * 3 2 1 6 6 H 1.09000 * 110.30998 * 120.41123 * 5 3 2 7 7 C 1.50702 * 110.30489 * 358.24890 * 5 3 2 8 8 H 1.08002 * 120.00312 * 0.02562 * 7 5 3 9 9 C 1.37875 * 120.00277 * 179.97438 * 7 5 3 10 10 N 1.31520 * 119.99668 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00362 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47225 * 90.00228 * 11 9 7 13 13 H 1.48504 * 109.47278 * 209.99998 * 11 9 7 14 14 H 1.48500 * 109.47118 * 330.00448 * 11 9 7 15 15 C 1.54593 * 105.14007 * 239.33582 * 5 3 2 16 16 C 1.54939 * 102.92313 * 338.03547 * 15 5 3 17 17 N 1.47907 * 109.91463 * 65.00289 * 3 2 1 18 18 C 1.46900 * 110.99769 * 265.39058 * 17 3 2 19 19 C 1.52994 * 109.47614 * 294.80850 * 18 17 3 20 20 C 1.52999 * 109.47307 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47371 * 59.99936 * 20 19 18 22 22 C 1.53008 * 109.46877 * 300.00158 * 21 20 19 23 23 C 1.52999 * 109.47250 * 59.99768 * 22 21 20 24 24 H 1.08997 * 109.46742 * 299.99488 * 1 2 3 25 25 H 1.08996 * 109.47478 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46676 * 240.00487 * 2 1 3 28 28 H 1.08996 * 109.46991 * 120.00454 * 2 1 3 29 29 H 0.96996 * 119.99703 * 179.97438 * 10 9 7 30 30 H 1.08997 * 110.72801 * 96.40017 * 15 5 3 31 31 H 1.08999 * 110.72213 * 219.50169 * 15 5 3 32 32 H 1.08995 * 110.66917 * 278.98498 * 16 15 5 33 33 H 1.09001 * 110.66428 * 155.85125 * 16 15 5 34 34 H 1.09005 * 109.47073 * 54.81285 * 18 17 3 35 35 H 1.09001 * 109.46938 * 299.99650 * 19 18 17 36 36 H 1.09000 * 109.47170 * 60.00116 * 19 18 17 37 37 H 1.08996 * 109.46921 * 299.99985 * 20 19 18 38 38 H 1.09002 * 109.47621 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47682 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.47103 * 59.99580 * 21 20 19 41 41 H 1.08996 * 109.47256 * 299.99854 * 22 21 20 42 42 H 1.09000 * 109.47089 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47329 * 179.97438 * 23 22 21 44 44 H 1.09010 * 109.46744 * 60.00041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6248 1.9830 -0.8506 5 6 3.5784 1.4594 -0.0679 6 1 3.9119 1.9948 -0.9568 7 6 4.1173 0.0521 -0.0706 8 1 3.4380 -0.7865 -0.0286 9 6 5.4776 -0.1651 -0.1277 10 7 6.3049 0.8560 -0.1803 11 14 6.1457 -1.9095 -0.1303 12 1 6.2607 -2.3935 -1.5296 13 1 7.4849 -1.9277 0.5113 14 1 5.2228 -2.7942 0.6252 15 6 4.0306 2.2047 1.2088 16 6 2.7757 3.0287 1.5919 17 7 1.6539 2.1133 1.2604 18 6 0.3979 2.8575 1.0972 19 6 0.6084 4.0019 0.1040 20 6 -0.6996 4.7774 -0.0654 21 6 -1.1327 5.3485 1.2863 22 6 -1.3432 4.2039 2.2797 23 6 -0.0352 3.4284 2.4490 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 7.2619 0.7032 -0.2201 30 1 4.2840 1.4979 1.9988 31 1 4.8749 2.8600 0.9942 32 1 2.7174 3.9400 0.9968 33 1 2.7795 3.2628 2.6565 34 1 -0.3752 2.1874 0.7210 35 1 1.3814 4.6720 0.4802 36 1 0.9173 3.5952 -0.8590 37 1 -1.4729 4.1076 -0.4414 38 1 -0.5498 5.5925 -0.7734 39 1 -2.0648 5.9005 1.1658 40 1 -0.3593 6.0182 1.6624 41 1 -2.1165 3.5341 1.9036 42 1 -1.6513 4.6107 3.2428 43 1 -0.1851 2.6134 3.1570 44 1 0.7382 4.0983 2.8251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710002715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -13.920751 kcal Electronic energy + Delta-G solvation = -20191.376712 eV Core-core repulsion = 17528.584670 eV Total energy + Delta-G solvation = -2662.792042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65210 -36.90688 -33.08906 -32.47988 -30.91952 -30.60508 -27.65712 -27.10910 -24.27283 -22.88190 -22.49381 -21.25688 -20.32476 -18.84134 -18.54027 -16.00005 -15.82466 -14.66112 -14.57518 -14.29637 -14.11634 -13.98611 -13.58283 -13.19025 -12.66665 -12.42572 -12.21559 -12.07056 -11.84863 -11.61419 -11.40217 -11.18283 -10.97722 -10.85116 -10.62383 -10.42610 -10.37503 -10.26686 -10.14493 -10.01763 -9.75084 -9.56210 -9.38193 -9.03073 -8.49139 -8.32715 -7.49702 -5.94186 -3.94443 3.34747 3.41836 3.45180 4.50087 4.61854 4.83581 4.92490 5.14073 5.34148 5.40656 5.41000 5.59100 5.65679 5.69559 5.75735 5.81030 5.81884 5.90303 6.01584 6.06636 6.10442 6.14363 6.19959 6.27702 6.29416 6.34298 6.39071 6.45027 6.54481 6.62033 6.69156 6.72078 6.92650 7.03472 7.21891 7.29645 7.37564 7.60366 7.71629 7.98761 8.00111 8.13908 8.53228 9.06690 9.69164 11.16353 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.006102 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.560933 B = 4587.920114 C = 4926.971530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C 0.072 3.928 4 H 0.031 0.969 5 C 0.045 3.955 6 H 0.026 0.974 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.274 1.274 15 C -0.091 4.091 16 C 0.023 3.977 17 N -0.503 5.503 18 C 0.069 3.931 19 C -0.157 4.157 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.108 4.108 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.257 0.743 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 6.459 2.509 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.129 4.129 3 C -0.035 4.035 4 H 0.049 0.951 5 C 0.026 3.974 6 H 0.044 0.956 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.715 3.285 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.130 4.130 16 C -0.105 4.105 17 N -0.226 5.226 18 C -0.040 4.040 19 C -0.196 4.196 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.885 6.098 2.922 14.552 hybrid contribution 0.654 -0.213 -0.699 0.981 sum -12.231 5.884 2.224 13.754 Atomic orbital electron populations 1.22048 0.98791 1.00016 1.00604 1.21482 0.92040 0.96825 1.02512 1.22491 0.98569 0.93829 0.88640 0.95118 1.19477 0.87486 0.96499 0.93904 0.95602 1.21519 0.91528 0.92170 1.49692 0.90949 1.25011 0.97321 0.96408 0.95401 1.69986 1.02586 1.29674 1.50975 0.86682 0.78331 0.85540 0.77966 1.20924 1.21484 1.19892 1.22385 0.93641 0.97321 0.99664 1.23414 0.93089 0.94944 0.99030 1.64856 1.01144 1.25051 1.31519 1.22005 0.94408 0.93410 0.94151 1.22289 0.97574 0.98959 1.00765 1.21461 0.97651 0.99268 0.96772 1.21533 1.00613 0.97737 0.95701 1.21523 0.97992 0.97290 0.98714 1.21511 0.96382 0.99293 0.97361 0.92443 0.94347 0.94143 0.91631 0.90972 0.93316 0.92241 0.92646 0.94494 0.92212 0.89824 0.91410 0.91727 0.92340 0.92602 0.92589 0.92242 0.92240 0.92364 0.91576 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.79 37.16 0.33 -2.22 16 2 C -0.09 -1.79 4.10 -26.73 -0.11 -1.90 16 3 C 0.07 1.49 2.40 -66.64 -0.16 1.33 16 4 H 0.03 0.62 5.83 -51.93 -0.30 0.32 16 5 C 0.05 1.12 2.87 -90.42 -0.26 0.86 16 6 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 7 C -0.51 -13.64 7.51 -34.44 -0.26 -13.90 16 8 H 0.07 1.88 4.72 -52.49 -0.25 1.64 16 9 C 0.06 1.64 5.34 -17.82 -0.10 1.55 16 10 N -0.89 -25.70 12.62 55.43 0.70 -25.00 16 11 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.09 -2.14 5.75 -24.87 -0.14 -2.28 16 16 C 0.02 0.44 5.49 -1.89 -0.01 0.43 16 17 N -0.50 -9.37 4.71 -214.67 -1.01 -10.38 16 18 C 0.07 1.06 1.79 -67.71 -0.12 0.94 16 19 C -0.16 -2.29 4.47 -26.73 -0.12 -2.41 16 20 C -0.11 -1.35 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 23 C -0.11 -1.45 5.22 -26.73 -0.14 -1.59 16 24 H 0.06 0.91 5.83 -51.93 -0.30 0.61 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.35 7.04 -51.93 -0.37 0.99 16 28 H 0.07 1.56 7.21 -51.93 -0.37 1.18 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 31 H 0.05 1.37 8.12 -51.93 -0.42 0.94 16 32 H 0.04 0.68 5.38 -51.93 -0.28 0.41 16 33 H 0.06 1.08 7.73 -51.93 -0.40 0.68 16 34 H 0.08 1.29 5.16 -51.93 -0.27 1.02 16 35 H 0.07 1.04 5.94 -51.93 -0.31 0.73 16 36 H 0.06 1.03 6.25 -51.93 -0.32 0.71 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.83 7.17 -51.92 -0.37 0.46 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -27.25 313.65 -9.91 -37.15 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.74 Total: 0.77 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.56 Total: -23.60 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.31 Total: -35.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.25 -9.91 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.234 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds