Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 H 1.09003 * 109.91177 * 303.90442 * 3 2 1 5 5 C 1.53992 * 110.08579 * 182.69074 * 3 2 1 6 6 H 1.09000 * 110.30998 * 120.41123 * 5 3 2 7 7 C 1.50702 * 110.30489 * 358.24890 * 5 3 2 8 8 H 1.08002 * 120.00312 * 0.02562 * 7 5 3 9 9 C 1.37875 * 120.00277 * 179.97438 * 7 5 3 10 10 N 1.31520 * 119.99668 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00362 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47225 * 90.00228 * 11 9 7 13 13 H 1.48504 * 109.47278 * 209.99998 * 11 9 7 14 14 H 1.48500 * 109.47118 * 330.00448 * 11 9 7 15 15 C 1.54593 * 105.14007 * 239.33582 * 5 3 2 16 16 C 1.54939 * 102.92313 * 338.03547 * 15 5 3 17 17 N 1.47907 * 109.91463 * 65.00289 * 3 2 1 18 18 C 1.46900 * 110.99769 * 265.39058 * 17 3 2 19 19 C 1.52994 * 109.47614 * 294.80850 * 18 17 3 20 20 C 1.52999 * 109.47307 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47371 * 59.99936 * 20 19 18 22 22 C 1.53008 * 109.46877 * 300.00158 * 21 20 19 23 23 C 1.52999 * 109.47250 * 59.99768 * 22 21 20 24 24 H 1.08997 * 109.46742 * 299.99488 * 1 2 3 25 25 H 1.08996 * 109.47478 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46676 * 240.00487 * 2 1 3 28 28 H 1.08996 * 109.46991 * 120.00454 * 2 1 3 29 29 H 0.96996 * 119.99703 * 179.97438 * 10 9 7 30 30 H 1.08997 * 110.72801 * 96.40017 * 15 5 3 31 31 H 1.08999 * 110.72213 * 219.50169 * 15 5 3 32 32 H 1.08995 * 110.66917 * 278.98498 * 16 15 5 33 33 H 1.09001 * 110.66428 * 155.85125 * 16 15 5 34 34 H 1.09005 * 109.47073 * 54.81285 * 18 17 3 35 35 H 1.09001 * 109.46938 * 299.99650 * 19 18 17 36 36 H 1.09000 * 109.47170 * 60.00116 * 19 18 17 37 37 H 1.08996 * 109.46921 * 299.99985 * 20 19 18 38 38 H 1.09002 * 109.47621 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47682 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.47103 * 59.99580 * 21 20 19 41 41 H 1.08996 * 109.47256 * 299.99854 * 22 21 20 42 42 H 1.09000 * 109.47089 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.47329 * 179.97438 * 23 22 21 44 44 H 1.09010 * 109.46744 * 60.00041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6248 1.9830 -0.8506 5 6 3.5784 1.4594 -0.0679 6 1 3.9119 1.9948 -0.9568 7 6 4.1173 0.0521 -0.0706 8 1 3.4380 -0.7865 -0.0286 9 6 5.4776 -0.1651 -0.1277 10 7 6.3049 0.8560 -0.1803 11 14 6.1457 -1.9095 -0.1303 12 1 6.2607 -2.3935 -1.5296 13 1 7.4849 -1.9277 0.5113 14 1 5.2228 -2.7942 0.6252 15 6 4.0306 2.2047 1.2088 16 6 2.7757 3.0287 1.5919 17 7 1.6539 2.1133 1.2604 18 6 0.3979 2.8575 1.0972 19 6 0.6084 4.0019 0.1040 20 6 -0.6996 4.7774 -0.0654 21 6 -1.1327 5.3485 1.2863 22 6 -1.3432 4.2039 2.2797 23 6 -0.0352 3.4284 2.4490 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 7.2619 0.7032 -0.2201 30 1 4.2840 1.4979 1.9988 31 1 4.8749 2.8600 0.9942 32 1 2.7174 3.9400 0.9968 33 1 2.7795 3.2628 2.6565 34 1 -0.3752 2.1874 0.7210 35 1 1.3814 4.6720 0.4802 36 1 0.9173 3.5952 -0.8590 37 1 -1.4729 4.1076 -0.4414 38 1 -0.5498 5.5925 -0.7734 39 1 -2.0648 5.9005 1.1658 40 1 -0.3593 6.0182 1.6624 41 1 -2.1165 3.5341 1.9036 42 1 -1.6513 4.6107 3.2428 43 1 -0.1851 2.6134 3.1570 44 1 0.7382 4.0983 2.8251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -28.311207 kcal Electronic energy + Delta-G solvation = -20192.000729 eV Core-core repulsion = 17528.584670 eV Total energy + Delta-G solvation = -2663.416059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07089 -38.23467 -34.92244 -34.05617 -32.55873 -31.62787 -29.26210 -28.61611 -26.16947 -24.41947 -23.55852 -22.49265 -21.84991 -20.52813 -19.87560 -17.84387 -17.36733 -16.52024 -15.96586 -15.74724 -15.51512 -15.06131 -14.84758 -14.55538 -14.24554 -13.97963 -13.73521 -13.29752 -13.24490 -13.10179 -12.91846 -12.73405 -12.56720 -12.35480 -12.07429 -11.97186 -11.84125 -11.69867 -11.49558 -11.42079 -11.22539 -11.06238 -10.85431 -10.73270 -10.47869 -10.44680 -9.00692 -8.07259 -6.13036 1.41608 1.42913 1.52632 2.46770 3.21425 3.25840 3.79645 3.92318 4.05211 4.21521 4.23439 4.34323 4.39725 4.43951 4.46899 4.53585 4.64494 4.68322 4.70470 4.73206 4.82534 4.83645 4.88850 5.04820 5.12854 5.19636 5.20328 5.27098 5.30047 5.30343 5.33324 5.38698 5.42055 5.48762 5.55637 5.61273 5.65249 5.73134 5.83400 5.91518 6.30833 6.42737 6.54357 6.95866 7.53694 9.03147 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.006102 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.560933 B = 4587.920114 C = 4926.971530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C 0.082 3.918 4 H 0.034 0.966 5 C 0.036 3.964 6 H -0.011 1.011 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.006 3.994 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.266 1.266 15 C -0.084 4.084 16 C 0.037 3.963 17 N -0.507 5.507 18 C 0.069 3.931 19 C -0.154 4.154 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.256 0.744 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 6.554 3.071 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.027 4.027 4 H 0.052 0.948 5 C 0.017 3.983 6 H 0.007 0.993 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.775 3.225 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.123 4.123 16 C -0.090 4.090 17 N -0.230 5.230 18 C -0.040 4.040 19 C -0.193 4.193 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.142 4.142 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.520 6.191 3.485 17.069 hybrid contribution 1.476 -0.214 -0.896 1.740 sum -14.044 5.977 2.588 15.481 Atomic orbital electron populations 1.21916 0.95446 1.01451 1.01441 1.21349 0.94945 0.95516 1.00693 1.22282 0.95499 0.94993 0.89877 0.94793 1.19468 0.90737 0.95331 0.92770 0.99301 1.21912 0.91837 0.93339 1.48627 0.90449 1.25789 0.97815 1.00082 0.95431 1.70125 1.02619 1.31626 1.52321 0.85689 0.77535 0.81155 0.78103 1.20347 1.21536 1.19047 1.22148 0.94943 0.96846 0.98366 1.23255 0.91146 0.94550 1.00065 1.64854 1.02176 1.25675 1.30275 1.22127 0.92514 0.93529 0.95806 1.22223 0.99026 0.98702 0.99313 1.21442 0.96035 0.99306 0.97948 1.21533 1.01523 0.97661 0.94643 1.21500 0.96507 0.97190 0.99785 1.21489 0.97681 0.99297 0.95746 0.91831 0.93164 0.92492 0.93114 0.93119 0.93543 0.94753 0.94991 0.93612 0.90608 0.89235 0.92427 0.93662 0.91575 0.91831 0.90494 0.92545 0.91449 0.90746 0.91912 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 8.79 71.98 0.63 -3.74 16 2 C -0.09 -3.41 4.10 30.59 0.13 -3.28 16 3 C 0.08 3.38 2.40 45.05 0.11 3.49 16 4 H 0.03 1.39 5.83 -2.39 -0.01 1.37 16 5 C 0.04 1.84 2.87 -10.66 -0.03 1.81 16 6 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 7 C -0.52 -28.55 7.51 25.60 0.19 -28.36 16 8 H 0.08 4.10 4.72 -2.91 -0.01 4.09 16 9 C 0.01 0.36 5.34 84.65 0.45 0.81 16 10 N -0.93 -55.31 12.62 21.45 0.27 -55.04 16 11 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C -0.08 -4.12 5.75 31.80 0.18 -3.93 16 16 C 0.04 1.44 5.49 86.65 0.48 1.91 16 17 N -0.51 -18.56 4.71 -833.08 -3.92 -22.48 16 18 C 0.07 1.97 1.79 44.91 0.08 2.05 16 19 C -0.15 -4.25 4.47 30.59 0.14 -4.11 16 20 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 21 C -0.12 -2.08 5.92 30.60 0.18 -1.90 16 22 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 23 C -0.10 -2.54 5.22 30.59 0.16 -2.38 16 24 H 0.06 1.84 5.83 -2.39 -0.01 1.83 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 2.10 7.04 -2.38 -0.02 2.09 16 28 H 0.05 2.18 7.21 -2.39 -0.02 2.17 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.03 1.80 7.86 -2.39 -0.02 1.78 16 31 H 0.03 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.05 1.69 5.38 -2.39 -0.01 1.68 16 33 H 0.08 2.69 7.73 -2.39 -0.02 2.67 16 34 H 0.09 2.51 5.16 -2.38 -0.01 2.49 16 35 H 0.06 1.70 5.94 -2.39 -0.01 1.68 16 36 H 0.04 1.41 6.25 -2.39 -0.01 1.40 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.36 7.17 -2.38 -0.02 1.34 16 Total: -1.00 -60.27 313.65 2.39 -57.88 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.95 Total: 14.61 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.06 Total: -41.61 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.65 Total: -77.52 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.27 2.39 -57.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.572 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds