Wall clock time and date at job start Mon Mar 30 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46802 * 2 1 4 4 C 1.52999 * 109.47013 * 119.99554 * 2 1 3 5 5 N 1.46899 * 109.47001 * 60.66093 * 4 2 1 6 6 C 1.46851 * 110.99224 * 210.08131 * 5 4 2 7 7 C 1.53033 * 109.51612 * 174.14449 * 6 5 4 8 8 C 1.53121 * 109.27553 * 59.18897 * 7 6 5 9 9 C 1.53119 * 109.15927 * 302.34007 * 8 7 6 10 10 H 1.09001 * 109.50429 * 177.59800 * 9 8 7 11 11 C 1.50701 * 109.53922 * 297.69812 * 9 8 7 12 12 H 1.07997 * 120.00394 * 119.82083 * 11 9 8 13 13 C 1.37877 * 119.99677 * 299.82333 * 11 9 8 14 14 N 1.31517 * 120.00266 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00025 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46971 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47155 * 119.99371 * 15 13 11 18 18 H 1.48497 * 109.47431 * 239.99753 * 15 13 11 19 19 C 1.46839 * 111.00417 * 85.87460 * 5 4 2 20 20 H 1.09003 * 109.46062 * 65.83472 * 19 5 4 21 21 C 1.52997 * 109.46687 * 305.86001 * 19 5 4 22 22 C 1.53001 * 117.50190 * 105.39615 * 21 19 5 23 23 C 1.53001 * 117.50393 * 174.05849 * 21 19 5 24 24 H 1.09004 * 109.46596 * 175.00823 * 1 2 3 25 25 H 1.08999 * 109.47361 * 295.00752 * 1 2 3 26 26 H 1.09000 * 109.47149 * 55.01087 * 1 2 3 27 27 H 1.08996 * 109.47550 * 240.00200 * 2 1 3 28 28 H 1.08996 * 109.47474 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47315 * 299.99623 * 3 2 1 30 30 H 1.09004 * 109.47693 * 59.99902 * 3 2 1 31 31 H 1.09001 * 109.47329 * 300.65823 * 4 2 1 32 32 H 1.09003 * 109.46959 * 180.65534 * 4 2 1 33 33 H 1.09007 * 109.46167 * 54.13885 * 6 5 4 34 34 H 1.08996 * 109.46484 * 294.16192 * 6 5 4 35 35 H 1.08996 * 109.50464 * 299.24645 * 7 6 5 36 36 H 1.08999 * 109.53501 * 179.14410 * 7 6 5 37 37 H 1.09000 * 109.52241 * 182.43808 * 8 7 6 38 38 H 1.08994 * 109.57961 * 62.27676 * 8 7 6 39 39 H 0.96998 * 120.00181 * 180.02562 * 14 13 11 40 40 H 1.09000 * 115.54379 * 319.72962 * 21 19 5 41 41 H 1.09000 * 117.49743 * 215.00767 * 22 21 19 42 42 H 1.08998 * 117.49699 * 0.02562 * 22 21 19 43 43 H 1.08999 * 117.49198 * 359.97438 * 23 21 19 44 44 H 1.09001 * 117.49474 * 144.96971 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5634 -2.1107 1.2414 6 6 1.3834 -2.6129 2.6096 7 6 0.7504 -4.0054 2.5639 8 6 1.6590 -4.9479 1.7698 9 6 1.8697 -4.3772 0.3646 10 1 2.5502 -5.0219 -0.1918 11 6 0.5466 -4.3037 -0.3531 12 1 0.1710 -3.3514 -0.6971 13 6 -0.1844 -5.4523 -0.5706 14 7 0.2732 -6.6122 -0.1521 15 14 -1.8247 -5.3613 -1.4596 16 1 -2.1118 -3.9509 -1.8255 17 1 -1.7672 -6.1895 -2.6908 18 1 -2.8990 -5.8709 -0.5700 19 6 2.4702 -2.9738 0.4740 20 1 3.4338 -3.0295 0.9805 21 6 2.6640 -2.3915 -0.9275 22 6 3.9966 -1.7025 -1.2283 23 6 3.6870 -3.0713 -1.8398 24 1 -0.3633 -1.0238 -0.0894 25 1 -0.3634 0.4344 0.9313 26 1 -0.3633 0.5893 -0.8419 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6670 -0.2141 2.1392 32 1 3.1299 -0.7110 1.2552 33 1 0.7319 -1.9358 3.1622 34 1 2.3521 -2.6703 3.1058 35 1 -0.2245 -3.9463 2.0800 36 1 0.6306 -4.3848 3.5787 37 1 1.1914 -5.9298 1.6978 38 1 2.6211 -5.0387 2.2740 39 1 -0.2409 -7.4203 -0.3054 40 1 1.7685 -1.9806 -1.3937 41 1 3.9777 -0.8384 -1.8924 42 1 4.7354 -1.6645 -0.4278 43 1 4.2223 -3.9331 -1.4412 44 1 3.4643 -3.1080 -2.9062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:31 Heat of formation + Delta-G solvation = 18.340122 kcal Electronic energy + Delta-G solvation = -20631.924540 eV Core-core repulsion = 17970.531434 eV Total energy + Delta-G solvation = -2661.393106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.25828 -35.75789 -35.43924 -32.84828 -30.84219 -29.56479 -26.69146 -25.52568 -24.86368 -23.05006 -21.99046 -21.32414 -19.74422 -19.32184 -18.49390 -15.74690 -15.33310 -15.17352 -14.53146 -14.20957 -13.82550 -13.54131 -13.25180 -12.97272 -12.66104 -12.37224 -12.22278 -11.85331 -11.64904 -11.40842 -11.12965 -11.06114 -10.87864 -10.82054 -10.51298 -10.42990 -10.40786 -10.12398 -9.92032 -9.73573 -9.53392 -9.39496 -9.22364 -8.74369 -8.45880 -8.13714 -7.35504 -5.81340 -3.80584 3.38839 3.47579 3.52071 4.42180 4.58301 4.66888 5.27397 5.34229 5.41503 5.49331 5.59160 5.61548 5.77332 5.78167 5.92524 5.97286 6.03081 6.04853 6.09906 6.13705 6.21752 6.26976 6.27510 6.37174 6.44821 6.47788 6.54492 6.60814 6.66270 6.75936 6.83926 6.86584 6.97274 7.04501 7.07396 7.44936 7.52566 7.72034 7.99214 8.05792 8.13103 8.28666 8.68480 9.22141 9.79983 11.25730 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018921 B = 0.008812 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.486032 B = 3176.845976 C = 3214.595534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.064 3.936 5 N -0.510 5.510 6 C 0.068 3.932 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.057 3.943 10 H 0.028 0.972 11 C -0.464 4.464 12 H 0.063 0.937 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.882 3.118 16 H -0.274 1.274 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.130 3.870 20 H 0.010 0.990 21 C -0.106 4.106 22 C -0.204 4.204 23 C -0.171 4.171 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.056 0.944 34 H 0.012 0.988 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.094 0.906 38 H 0.008 0.992 39 H 0.254 0.746 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 10.646 1.636 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.064 4.064 5 N -0.234 5.234 6 C -0.060 4.060 7 C -0.139 4.139 8 C -0.153 4.153 9 C 0.039 3.961 10 H 0.046 0.954 11 C -0.502 4.502 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.711 3.289 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.022 3.978 20 H 0.028 0.972 21 C -0.124 4.124 22 C -0.241 4.241 23 C -0.209 4.209 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.688 10.454 1.422 11.176 hybrid contribution -0.097 0.002 0.000 0.097 sum 3.591 10.456 1.422 11.146 Atomic orbital electron populations 1.21686 0.95100 1.02998 0.99486 1.21516 0.96493 0.94369 1.00068 1.21825 1.00341 0.97126 1.00909 1.22070 0.96681 0.90403 0.97283 1.61739 1.48524 1.00165 1.12978 1.22016 0.97570 0.97584 0.88805 1.21435 1.01556 0.93155 0.97774 1.21628 0.95514 1.01742 0.96407 1.18757 0.96474 0.87899 0.92994 0.95403 1.21068 1.02863 0.93037 1.33251 0.91879 1.24932 0.97534 0.95745 0.96407 1.69875 1.38304 0.97980 1.48025 0.86691 0.84925 0.77868 0.79428 1.19842 1.21652 1.21558 1.21343 0.91363 0.95451 0.89656 0.97214 1.22272 0.92142 1.00895 0.97071 1.23093 1.01239 0.96115 1.03679 1.22803 1.04245 0.95014 0.98820 0.90526 0.94122 0.94495 0.88917 0.93387 0.93201 0.93506 0.92803 0.95508 0.92570 0.97015 0.90365 0.94647 0.88761 0.97374 0.93581 0.86694 0.89869 0.90089 0.89337 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.97 37.16 0.33 -1.76 16 2 C -0.11 -1.57 2.57 -90.62 -0.23 -1.80 16 3 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 4 C 0.06 1.02 4.16 -3.82 -0.02 1.00 16 5 N -0.51 -9.58 3.36 -226.69 -0.76 -10.34 16 6 C 0.07 1.26 5.36 -3.83 -0.02 1.24 16 7 C -0.10 -2.11 5.84 -26.65 -0.16 -2.27 16 8 C -0.11 -2.68 5.32 -26.61 -0.14 -2.82 16 9 C 0.06 1.36 2.02 -91.69 -0.19 1.18 16 10 H 0.03 0.74 7.74 -51.93 -0.40 0.34 16 11 C -0.46 -11.94 6.49 -34.44 -0.22 -12.16 16 12 H 0.06 1.66 7.02 -52.49 -0.37 1.29 16 13 C 0.05 1.41 5.30 -17.82 -0.09 1.32 16 14 N -0.90 -25.37 11.32 55.43 0.63 -24.74 16 15 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C 0.13 2.61 1.50 -67.73 -0.10 2.51 16 20 H 0.01 0.21 7.95 -51.93 -0.41 -0.21 16 21 C -0.11 -1.93 2.23 -90.62 -0.20 -2.13 16 22 C -0.20 -3.13 8.95 -26.69 -0.24 -3.37 16 23 C -0.17 -2.94 9.85 -26.69 -0.26 -3.21 16 24 H 0.08 1.41 7.78 -51.93 -0.40 1.01 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.47 3.63 -51.93 -0.19 1.28 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.81 7.63 -51.93 -0.40 0.42 16 32 H 0.03 0.43 7.48 -51.93 -0.39 0.04 16 33 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 1.81 7.36 -51.93 -0.38 1.43 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.12 2.24 5.88 -51.93 -0.31 1.94 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 43 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -26.46 325.52 -9.62 -36.08 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.17 Total: 1.46 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -1.20 Total: -23.70 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.13 Total: -35.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.46 -9.62 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.416 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds