Wall clock time and date at job start Mon Mar 30 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 C 1.52994 * 109.47550 * 120.00448 * 2 1 3 5 5 H 1.09005 * 108.89377 * 313.93075 * 4 2 1 6 6 C 1.54063 * 108.98132 * 195.16198 * 4 2 1 7 7 H 1.08997 * 108.92245 * 77.54679 * 6 4 2 8 8 C 1.50706 * 108.91964 * 318.99037 * 6 4 2 9 9 H 1.08001 * 119.99776 * 350.46957 * 8 6 4 10 10 C 1.37868 * 119.99962 * 170.46552 * 8 6 4 11 11 N 1.31516 * 119.99871 * 180.02562 * 10 8 6 12 12 Si 1.86798 * 120.00282 * 0.02562 * 10 8 6 13 13 H 1.48495 * 109.47518 * 89.99608 * 12 10 8 14 14 H 1.48503 * 109.47019 * 209.99884 * 12 10 8 15 15 H 1.48503 * 109.46877 * 329.99566 * 12 10 8 16 16 C 1.54295 * 112.28877 * 198.26883 * 6 4 2 17 17 C 1.50456 * 113.03305 * 318.30329 * 16 6 4 18 18 C 1.54509 * 108.85314 * 92.15570 * 17 16 6 19 19 C 1.45860 * 111.58754 * 282.80208 * 18 17 16 20 20 N 1.44272 * 108.97861 * 72.68794 * 4 2 1 21 21 C 1.46904 * 111.00299 * 339.95615 * 20 4 2 22 22 C 1.52997 * 117.50064 * 199.66028 * 21 20 4 23 23 C 1.53001 * 117.49878 * 268.32011 * 21 20 4 24 24 H 1.08999 * 109.47267 * 26.33600 * 1 2 3 25 25 H 1.09003 * 109.47481 * 146.34309 * 1 2 3 26 26 H 1.09000 * 109.46838 * 266.33801 * 1 2 3 27 27 H 1.09005 * 109.46925 * 240.00347 * 2 1 3 28 28 H 1.09000 * 109.47553 * 195.22608 * 3 2 1 29 29 H 1.09007 * 109.47187 * 315.22951 * 3 2 1 30 30 H 1.09001 * 109.46844 * 75.22312 * 3 2 1 31 31 H 0.97005 * 120.00125 * 180.02562 * 11 10 8 32 32 H 1.08995 * 108.77180 * 197.38189 * 16 6 4 33 33 H 1.08999 * 108.76810 * 79.22081 * 16 6 4 34 34 H 1.09000 * 109.57343 * 332.33802 * 17 16 6 35 35 H 1.09007 * 109.57279 * 211.96108 * 17 16 6 36 36 H 1.09005 * 109.05448 * 162.26555 * 18 17 16 37 37 H 1.08997 * 109.00475 * 43.31373 * 18 17 16 38 38 H 1.09000 * 108.79983 * 300.44117 * 19 18 17 39 39 H 1.09004 * 108.70432 * 182.15449 * 19 18 17 40 40 H 1.08997 * 115.54826 * 53.98584 * 21 20 4 41 41 H 1.09001 * 117.49621 * 215.00614 * 22 21 20 42 42 H 1.09006 * 117.49768 * 0.02562 * 22 21 20 43 43 H 1.09001 * 117.49822 * 359.97209 * 23 21 20 44 44 H 1.08991 * 117.50044 * 144.96996 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.4832 -0.3638 2.1153 6 6 3.5329 -0.3931 1.4428 7 1 3.6228 0.6069 1.8668 8 6 4.2162 -0.4150 0.0997 9 1 3.6904 -0.7858 -0.7677 10 6 5.5126 0.0384 -0.0215 11 7 6.1087 0.0198 -1.1937 12 14 6.4222 0.6792 1.4789 13 1 7.1391 -0.4411 2.1391 14 1 7.4009 1.7145 1.0596 15 1 5.4497 1.2740 2.4307 16 6 4.2364 -1.3983 2.3784 17 6 3.4053 -1.7680 3.5769 18 6 2.5824 -3.0324 3.2430 19 6 1.4322 -2.7178 2.4030 20 7 1.8138 -2.1381 1.0980 21 6 0.7844 -2.4017 0.0837 22 6 0.0959 -3.7677 0.1142 23 6 -0.6647 -2.5168 0.5611 24 1 -0.3634 0.9210 -0.4559 25 1 -0.3634 -0.8554 -0.5696 26 1 -0.3633 -0.0656 1.0256 27 1 1.8933 -0.5138 -0.8901 28 1 3.0960 1.4545 -0.2699 29 1 1.4733 2.0283 -0.7238 30 1 1.9140 1.8723 0.9937 31 1 7.0210 0.3385 -1.2790 32 1 5.1732 -0.9604 2.7228 33 1 4.4615 -2.3037 1.8148 34 1 2.7309 -0.9472 3.8209 35 1 4.0585 -1.9711 4.4256 36 1 2.2324 -3.4845 4.1710 37 1 3.2213 -3.7438 2.7197 38 1 0.7961 -2.0070 2.9305 39 1 0.8659 -3.6327 2.2288 40 1 0.9583 -1.9474 -0.8917 41 1 -0.1829 -4.2121 -0.8413 42 1 0.4065 -4.4707 0.8871 43 1 -0.8541 -2.3974 1.6278 44 1 -1.4440 -2.1379 -0.1000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710007192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:01 Heat of formation + Delta-G solvation = 37.707555 kcal Electronic energy + Delta-G solvation = -20977.010782 eV Core-core repulsion = 18316.457512 eV Total energy + Delta-G solvation = -2660.553271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63036 -37.75645 -36.59910 -34.57359 -32.98259 -32.02973 -28.98762 -27.28062 -25.94877 -25.09643 -23.25584 -22.48899 -21.54700 -20.70682 -19.69040 -18.46009 -17.71127 -16.87564 -16.28276 -15.86172 -15.51783 -14.94725 -14.61909 -14.50057 -14.32998 -14.06361 -13.69639 -13.46326 -13.21461 -12.99655 -12.66982 -12.63457 -12.41235 -12.20618 -12.07277 -11.94513 -11.84416 -11.48628 -11.33679 -11.28210 -11.22390 -10.95227 -10.85377 -10.66692 -10.56210 -10.35237 -8.69102 -8.11838 -6.04406 1.33162 1.36466 1.44665 2.42615 2.94601 3.20149 3.28890 3.88828 3.90907 4.05937 4.15018 4.23175 4.27545 4.34153 4.36404 4.50579 4.58896 4.63066 4.73650 4.84597 4.88479 4.91968 4.96026 4.98509 5.02721 5.08104 5.12424 5.18310 5.22702 5.29673 5.33074 5.36932 5.40397 5.44382 5.53559 5.60313 5.64556 5.78802 5.92255 5.97585 6.46988 6.53317 6.67894 6.97831 7.52871 9.04678 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.009871 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.624275 B = 2835.838048 C = 3430.516947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.084 4.084 3 C -0.141 4.141 4 C 0.126 3.874 5 H 0.033 0.967 6 C 0.022 3.978 7 H 0.016 0.984 8 C -0.451 4.451 9 H 0.046 0.954 10 C 0.007 3.993 11 N -0.957 5.957 12 Si 0.924 3.076 13 H -0.280 1.280 14 H -0.305 1.305 15 H -0.250 1.250 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.048 3.952 20 N -0.499 5.499 21 C 0.014 3.986 22 C -0.182 4.182 23 C -0.200 4.200 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.256 0.744 32 H 0.016 0.984 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -4.452 8.134 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.199 4.199 4 C 0.018 3.982 5 H 0.051 0.949 6 C 0.002 3.998 7 H 0.034 0.966 8 C -0.490 4.490 9 H 0.065 0.935 10 C -0.188 4.188 11 N -0.600 5.600 12 Si 0.753 3.247 13 H -0.206 1.206 14 H -0.233 1.233 15 H -0.174 1.174 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.079 4.079 20 N -0.220 5.220 21 C -0.095 4.095 22 C -0.219 4.219 23 C -0.240 4.240 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.458 -4.627 7.914 16.284 hybrid contribution 0.715 0.855 0.401 1.185 sum -12.743 -3.772 8.315 15.677 Atomic orbital electron populations 1.22650 0.94107 1.02408 1.01958 1.21224 0.95183 0.95866 0.97989 1.21930 1.02110 0.95773 1.00093 1.21281 0.95065 0.86489 0.95388 0.94927 1.19705 0.93025 0.93372 0.93686 0.96580 1.21199 0.96827 1.36669 0.94259 0.93549 1.25636 0.98720 0.97257 0.97150 1.70041 1.13508 1.51315 1.25148 0.86171 0.78901 0.77899 0.81713 1.20623 1.23250 1.17404 1.21542 0.97061 0.99902 0.96138 1.21387 0.98662 0.98075 0.96948 1.20569 0.97351 0.97258 0.99416 1.21205 0.97214 1.00151 0.89295 1.61433 1.40832 1.13146 1.06634 1.22967 0.88401 1.00738 0.97410 1.23414 1.03483 0.91484 1.03536 1.23713 0.96067 1.02038 1.02134 0.93218 0.89916 0.92844 0.92727 0.92846 0.93273 0.93768 0.93483 0.96544 0.93694 0.92399 0.91814 0.89517 0.92747 0.94505 0.89696 0.86962 0.87843 0.88462 0.88623 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 7.55 71.98 0.54 -3.75 16 2 C -0.08 -3.07 1.44 -10.80 -0.02 -3.09 16 3 C -0.14 -5.49 8.03 71.98 0.58 -4.92 16 4 C 0.13 4.73 1.24 45.76 0.06 4.78 16 5 H 0.03 1.16 6.09 -2.38 -0.01 1.15 16 6 C 0.02 0.97 1.12 -10.74 -0.01 0.96 16 7 H 0.02 0.76 6.00 -2.39 -0.01 0.75 16 8 C -0.45 -24.61 5.95 25.60 0.15 -24.46 16 9 H 0.05 2.81 6.25 -2.91 -0.02 2.79 16 10 C 0.01 0.40 5.45 84.65 0.46 0.86 16 11 N -0.96 -60.43 13.96 21.44 0.30 -60.13 16 12 Si 0.92 46.26 24.62 68.60 1.69 47.95 16 13 H -0.28 -13.79 7.02 99.48 0.70 -13.09 16 14 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 15 H -0.25 -11.67 6.31 99.48 0.63 -11.04 16 16 C -0.11 -4.61 4.19 30.21 0.13 -4.48 16 17 C -0.11 -3.67 5.60 30.28 0.17 -3.50 16 18 C -0.11 -3.01 5.53 28.92 0.16 -2.85 16 19 C 0.05 1.33 3.68 83.94 0.31 1.63 16 20 N -0.50 -17.03 4.48 -860.93 -3.86 -20.89 16 21 C 0.01 0.41 3.92 44.91 0.18 0.58 16 22 C -0.18 -4.24 9.78 30.62 0.30 -3.94 16 23 C -0.20 -4.37 7.06 30.62 0.22 -4.16 16 24 H 0.05 1.29 7.52 -2.39 -0.02 1.28 16 25 H 0.08 2.08 3.67 -2.39 -0.01 2.07 16 26 H 0.05 1.39 6.96 -2.39 -0.02 1.38 16 27 H 0.05 2.34 5.05 -2.38 -0.01 2.33 16 28 H 0.05 2.53 5.77 -2.39 -0.01 2.52 16 29 H 0.05 1.69 7.72 -2.38 -0.02 1.67 16 30 H 0.04 1.59 7.91 -2.39 -0.02 1.57 16 31 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 32 H 0.02 0.72 4.60 -2.39 -0.01 0.71 16 33 H 0.04 2.09 7.21 -2.39 -0.02 2.07 16 34 H 0.06 1.82 7.15 -2.39 -0.02 1.80 16 35 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 38 H 0.04 0.97 6.84 -2.39 -0.02 0.95 16 39 H 0.08 2.03 4.95 -2.38 -0.01 2.02 16 40 H 0.11 3.71 5.21 -2.39 -0.01 3.70 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 42 H 0.10 2.20 6.26 -2.38 -0.01 2.18 16 43 H 0.10 2.01 6.73 -2.39 -0.02 2.00 16 44 H 0.11 2.04 7.15 -2.39 -0.02 2.02 16 Total: -1.00 -63.31 293.39 2.25 -61.06 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.90 Total: 18.34 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.22 Total: -46.33 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.56 Total: -81.02 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.69 Total: 47.95 kcal Total: -63.31 2.25 -61.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.769 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds