Wall clock time and date at job start Mon Mar 30 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47410 * 2 1 4 4 C 1.52994 * 109.47505 * 120.00303 * 2 1 3 5 5 H 1.09005 * 108.78591 * 75.70406 * 4 2 1 6 6 C 1.50446 * 108.72458 * 194.05416 * 4 2 1 7 7 H 1.09006 * 109.62758 * 94.83247 * 6 4 2 8 8 C 1.50690 * 109.63545 * 334.23487 * 6 4 2 9 9 H 1.08000 * 119.99874 * 354.18665 * 8 6 4 10 10 C 1.37874 * 120.00021 * 174.17998 * 8 6 4 11 11 N 1.31522 * 119.99861 * 180.02562 * 10 8 6 12 12 Si 1.86801 * 120.00166 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47129 * 89.99820 * 12 10 8 14 14 H 1.48507 * 109.46983 * 209.99748 * 12 10 8 15 15 H 1.48496 * 109.46865 * 329.99365 * 12 10 8 16 16 C 1.54316 * 108.49713 * 214.52917 * 6 4 2 17 17 C 1.45874 * 112.18489 * 281.46708 * 16 6 4 18 18 C 1.54308 * 112.18722 * 61.12035 * 17 16 6 19 19 C 1.50442 * 108.50151 * 281.46064 * 18 17 16 20 20 N 1.48002 * 112.82639 * 93.72932 * 19 18 17 21 21 C 1.46903 * 110.99987 * 191.34946 * 20 19 18 22 22 C 1.52998 * 117.49392 * 315.07673 * 21 20 19 23 23 C 1.53001 * 60.03262 * 107.47983 * 22 21 20 24 24 H 1.09003 * 109.46534 * 271.36689 * 1 2 3 25 25 H 1.08996 * 109.47311 * 31.36249 * 1 2 3 26 26 H 1.08999 * 109.47429 * 151.37041 * 1 2 3 27 27 H 1.09005 * 109.47217 * 240.00537 * 2 1 3 28 28 H 1.08992 * 109.47426 * 210.82630 * 3 2 1 29 29 H 1.09002 * 109.46922 * 330.82796 * 3 2 1 30 30 H 1.09001 * 109.46697 * 90.82030 * 3 2 1 31 31 H 0.97004 * 119.99687 * 180.02562 * 11 10 8 32 32 H 1.09000 * 108.93275 * 42.16213 * 16 6 4 33 33 H 1.08996 * 108.93483 * 160.85757 * 16 6 4 34 34 H 1.09005 * 108.93547 * 181.81806 * 17 16 6 35 35 H 1.09004 * 108.94055 * 300.50926 * 17 16 6 36 36 H 1.09001 * 109.63152 * 41.17097 * 18 17 16 37 37 H 1.08999 * 109.63311 * 161.55872 * 18 17 16 38 38 H 1.09000 * 108.81152 * 332.86364 * 19 18 17 39 39 H 1.09003 * 108.81205 * 214.59142 * 19 18 17 40 40 H 1.08999 * 115.54823 * 169.41269 * 21 20 19 41 41 H 1.09008 * 117.49801 * 214.98056 * 22 21 20 42 42 H 1.08998 * 117.50680 * 359.97438 * 22 21 20 43 43 H 1.09003 * 117.49952 * 107.49637 * 23 22 21 44 44 H 1.09000 * 117.50010 * 252.52435 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.9168 -1.7953 1.1092 6 6 3.5042 -0.4189 1.4174 7 1 3.6282 0.4238 2.0976 8 6 4.1099 -0.0871 0.0781 9 1 3.5194 -0.1852 -0.8208 10 6 5.4179 0.3419 0.0003 11 7 5.9464 0.6319 -1.1686 12 14 6.4395 0.5110 1.5550 13 1 7.1370 -0.7705 1.8308 14 1 7.4422 1.5913 1.3733 15 1 5.5513 0.8470 2.6967 16 6 4.1973 -1.6660 2.0053 17 6 3.9764 -1.7933 3.4416 18 6 2.4805 -1.9419 3.7902 19 6 1.8387 -0.5827 3.7284 20 7 1.2284 -0.2952 2.4111 21 6 0.8554 1.1215 2.3016 22 6 0.1406 1.7580 3.4952 23 6 1.5969 2.1186 3.1954 24 1 -0.3632 0.0245 1.0274 25 1 -0.3634 0.8775 -0.5348 26 1 -0.3634 -0.9020 -0.4924 27 1 1.8933 -0.5138 -0.8901 28 1 2.9931 1.4909 -0.5266 29 1 1.3152 2.0842 -0.5009 30 1 2.1750 1.7801 1.0276 31 1 6.8668 0.9334 -1.2234 32 1 3.8085 -2.5544 1.5074 33 1 5.2688 -1.5964 1.8182 34 1 4.5132 -2.6693 3.8057 35 1 4.3680 -0.9064 3.9397 36 1 2.0012 -2.6063 3.0712 37 1 2.3776 -2.3534 4.7942 38 1 2.5956 0.1733 3.9377 39 1 1.0654 -0.5240 4.4944 40 1 0.5666 1.4558 1.3051 41 1 -0.6182 2.5116 3.2840 42 1 -0.0534 1.1256 4.3615 43 1 1.7963 3.1094 2.7870 44 1 2.3613 1.7230 3.8643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:04 Heat of formation + Delta-G solvation = 72.724547 kcal Electronic energy + Delta-G solvation = -21278.198214 eV Core-core repulsion = 18619.163394 eV Total energy + Delta-G solvation = -2659.034820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40763 -36.38362 -35.34605 -32.82145 -31.36115 -30.18810 -27.42644 -25.69739 -24.91883 -23.14880 -22.11052 -21.42203 -19.75579 -19.65479 -17.91895 -16.82603 -15.81199 -15.56716 -14.80681 -14.14798 -13.71994 -13.51483 -13.41340 -13.27469 -12.83929 -12.36239 -12.21525 -11.93368 -11.84576 -11.46513 -11.18841 -11.00077 -10.92499 -10.69507 -10.49619 -10.44980 -10.16671 -10.08420 -9.87165 -9.82194 -9.57676 -9.45652 -9.32002 -9.13573 -8.64756 -8.41426 -7.34698 -6.03891 -3.96631 3.26825 3.37985 3.38911 4.08528 4.43547 4.55679 5.15802 5.19596 5.23551 5.34519 5.37063 5.46876 5.59067 5.72643 5.79024 5.84356 5.91786 5.99037 6.03251 6.14878 6.22953 6.28684 6.34317 6.41139 6.42694 6.49022 6.53855 6.57912 6.66610 6.72993 6.74788 6.85601 6.93857 6.99083 7.03505 7.18330 7.31140 7.46925 7.63722 7.76816 7.80747 7.95091 8.55457 8.98458 9.58106 11.07203 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.011372 C = 0.009496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.229141 B = 2461.555854 C = 2947.749915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.171 4.171 4 C 0.114 3.886 5 H 0.066 0.934 6 C -0.003 4.003 7 H 0.033 0.967 8 C -0.498 4.498 9 H 0.092 0.908 10 C 0.069 3.931 11 N -0.902 5.902 12 Si 0.872 3.128 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.266 1.266 16 C -0.128 4.128 17 C -0.120 4.120 18 C -0.116 4.116 19 C 0.054 3.946 20 N -0.513 5.513 21 C 0.028 3.972 22 C -0.191 4.191 23 C -0.230 4.230 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.915 -0.843 8.201 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.096 4.096 3 C -0.227 4.227 4 C 0.007 3.993 5 H 0.084 0.916 6 C -0.024 4.024 7 H 0.051 0.949 8 C -0.536 4.536 9 H 0.110 0.890 10 C -0.132 4.132 11 N -0.541 5.541 12 Si 0.702 3.298 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.191 1.191 16 C -0.166 4.166 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.073 4.073 20 N -0.235 5.235 21 C -0.081 4.081 22 C -0.229 4.229 23 C -0.270 4.270 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.172 0.828 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.151 -1.088 8.088 12.261 hybrid contribution 1.636 0.541 0.989 1.987 sum -7.515 -0.548 9.077 11.797 Atomic orbital electron populations 1.22450 0.97144 0.99859 1.02963 1.21144 0.92960 0.97530 0.97992 1.22857 1.02762 0.93929 1.03188 1.21373 0.92030 0.98166 0.87688 0.91586 1.19492 0.92183 0.93098 0.97578 0.94895 1.21275 0.96919 1.42919 0.92487 0.89029 1.24958 0.97637 0.95434 0.95176 1.69890 1.14502 1.46361 1.23367 0.87024 0.80399 0.77135 0.85221 1.20720 1.22513 1.19067 1.20975 1.01183 1.00856 0.93549 1.20716 0.95596 1.00506 0.98891 1.21376 0.95857 0.97181 1.00995 1.21885 0.97348 0.96951 0.91114 1.62037 1.44679 1.14747 1.02040 1.23604 1.00901 0.86866 0.96726 1.23148 0.95018 1.03577 1.01176 1.23542 0.94916 1.01728 1.06774 0.89951 0.93987 0.94227 0.90560 0.88008 0.96078 0.91679 0.92874 0.92918 0.93016 0.93509 0.93216 0.90887 0.92189 0.93902 0.92158 0.82825 0.89271 0.89421 0.89246 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.23 37.16 0.31 -2.37 16 2 C -0.08 -1.46 2.16 -90.62 -0.20 -1.66 16 3 C -0.17 -3.39 6.73 37.16 0.25 -3.14 16 4 C 0.11 2.18 1.80 -68.38 -0.12 2.05 16 5 H 0.07 1.29 6.59 -51.93 -0.34 0.95 16 6 C 0.00 -0.07 0.48 -92.36 -0.04 -0.12 16 7 H 0.03 0.77 5.21 -51.93 -0.27 0.50 16 8 C -0.50 -12.68 5.75 -34.45 -0.20 -12.88 16 9 H 0.09 2.48 4.83 -52.49 -0.25 2.22 16 10 C 0.07 1.88 5.42 -17.82 -0.10 1.78 16 11 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 12 Si 0.87 21.52 24.82 -169.99 -4.22 17.30 16 13 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 14 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 15 H -0.27 -6.35 6.37 56.52 0.36 -5.99 16 16 C -0.13 -2.65 4.01 -29.41 -0.12 -2.77 16 17 C -0.12 -2.11 5.30 -29.42 -0.16 -2.26 16 18 C -0.12 -1.79 5.63 -27.32 -0.15 -1.94 16 19 C 0.05 0.86 4.14 -4.49 -0.02 0.84 16 20 N -0.51 -8.67 3.97 -219.94 -0.87 -9.54 16 21 C 0.03 0.45 2.54 -67.67 -0.17 0.28 16 22 C -0.19 -2.65 9.94 -26.73 -0.27 -2.91 16 23 C -0.23 -3.63 8.48 -26.69 -0.23 -3.86 16 24 H 0.08 1.31 4.89 -51.93 -0.25 1.05 16 25 H 0.04 0.63 7.39 -51.93 -0.38 0.24 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.58 6.56 -51.93 -0.34 1.24 16 28 H 0.10 2.41 5.36 -51.93 -0.28 2.13 16 29 H 0.02 0.37 7.31 -51.93 -0.38 -0.01 16 30 H 0.06 1.27 3.52 -51.93 -0.18 1.09 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.05 1.06 7.52 -51.93 -0.39 0.67 16 33 H 0.05 1.18 4.54 -51.93 -0.24 0.94 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.92 7.51 -51.93 -0.39 0.53 16 36 H 0.07 1.15 7.08 -51.93 -0.37 0.79 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.75 3.91 -51.93 -0.20 0.55 16 39 H 0.06 0.87 6.92 -51.93 -0.36 0.51 16 40 H 0.15 2.52 3.21 -51.93 -0.17 2.35 16 41 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.09 1.17 6.86 -51.93 -0.36 0.82 16 43 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 44 H 0.09 1.58 5.69 -51.93 -0.30 1.28 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -26.83 287.61 -7.95 -34.78 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.75 Total: 7.80 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -1.21 Total: -28.96 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.10 Total: -35.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.22 Total: 17.30 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.83 -7.95 -34.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.507 kcal (2) G-P(sol) polarization free energy of solvation -26.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds