Wall clock time and date at job start Mon Mar 30 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47410 * 2 1 4 4 C 1.52994 * 109.47505 * 120.00303 * 2 1 3 5 5 H 1.09005 * 108.78591 * 75.70406 * 4 2 1 6 6 C 1.50446 * 108.72458 * 194.05416 * 4 2 1 7 7 H 1.09006 * 109.62758 * 94.83247 * 6 4 2 8 8 C 1.50690 * 109.63545 * 334.23487 * 6 4 2 9 9 H 1.08000 * 119.99874 * 354.18665 * 8 6 4 10 10 C 1.37874 * 120.00021 * 174.17998 * 8 6 4 11 11 N 1.31522 * 119.99861 * 180.02562 * 10 8 6 12 12 Si 1.86801 * 120.00166 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47129 * 89.99820 * 12 10 8 14 14 H 1.48507 * 109.46983 * 209.99748 * 12 10 8 15 15 H 1.48496 * 109.46865 * 329.99365 * 12 10 8 16 16 C 1.54316 * 108.49713 * 214.52917 * 6 4 2 17 17 C 1.45874 * 112.18489 * 281.46708 * 16 6 4 18 18 C 1.54308 * 112.18722 * 61.12035 * 17 16 6 19 19 C 1.50442 * 108.50151 * 281.46064 * 18 17 16 20 20 N 1.48002 * 112.82639 * 93.72932 * 19 18 17 21 21 C 1.46903 * 110.99987 * 191.34946 * 20 19 18 22 22 C 1.52998 * 117.49392 * 315.07673 * 21 20 19 23 23 C 1.53001 * 60.03262 * 107.47983 * 22 21 20 24 24 H 1.09003 * 109.46534 * 271.36689 * 1 2 3 25 25 H 1.08996 * 109.47311 * 31.36249 * 1 2 3 26 26 H 1.08999 * 109.47429 * 151.37041 * 1 2 3 27 27 H 1.09005 * 109.47217 * 240.00537 * 2 1 3 28 28 H 1.08992 * 109.47426 * 210.82630 * 3 2 1 29 29 H 1.09002 * 109.46922 * 330.82796 * 3 2 1 30 30 H 1.09001 * 109.46697 * 90.82030 * 3 2 1 31 31 H 0.97004 * 119.99687 * 180.02562 * 11 10 8 32 32 H 1.09000 * 108.93275 * 42.16213 * 16 6 4 33 33 H 1.08996 * 108.93483 * 160.85757 * 16 6 4 34 34 H 1.09005 * 108.93547 * 181.81806 * 17 16 6 35 35 H 1.09004 * 108.94055 * 300.50926 * 17 16 6 36 36 H 1.09001 * 109.63152 * 41.17097 * 18 17 16 37 37 H 1.08999 * 109.63311 * 161.55872 * 18 17 16 38 38 H 1.09000 * 108.81152 * 332.86364 * 19 18 17 39 39 H 1.09003 * 108.81205 * 214.59142 * 19 18 17 40 40 H 1.08999 * 115.54823 * 169.41269 * 21 20 19 41 41 H 1.09008 * 117.49801 * 214.98056 * 22 21 20 42 42 H 1.08998 * 117.50680 * 359.97438 * 22 21 20 43 43 H 1.09003 * 117.49952 * 107.49637 * 23 22 21 44 44 H 1.09000 * 117.50010 * 252.52435 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.9168 -1.7953 1.1092 6 6 3.5042 -0.4189 1.4174 7 1 3.6282 0.4238 2.0976 8 6 4.1099 -0.0871 0.0781 9 1 3.5194 -0.1852 -0.8208 10 6 5.4179 0.3419 0.0003 11 7 5.9464 0.6319 -1.1686 12 14 6.4395 0.5110 1.5550 13 1 7.1370 -0.7705 1.8308 14 1 7.4422 1.5913 1.3733 15 1 5.5513 0.8470 2.6967 16 6 4.1973 -1.6660 2.0053 17 6 3.9764 -1.7933 3.4416 18 6 2.4805 -1.9419 3.7902 19 6 1.8387 -0.5827 3.7284 20 7 1.2284 -0.2952 2.4111 21 6 0.8554 1.1215 2.3016 22 6 0.1406 1.7580 3.4952 23 6 1.5969 2.1186 3.1954 24 1 -0.3632 0.0245 1.0274 25 1 -0.3634 0.8775 -0.5348 26 1 -0.3634 -0.9020 -0.4924 27 1 1.8933 -0.5138 -0.8901 28 1 2.9931 1.4909 -0.5266 29 1 1.3152 2.0842 -0.5009 30 1 2.1750 1.7801 1.0276 31 1 6.8668 0.9334 -1.2234 32 1 3.8085 -2.5544 1.5074 33 1 5.2688 -1.5964 1.8182 34 1 4.5132 -2.6693 3.8057 35 1 4.3680 -0.9064 3.9397 36 1 2.0012 -2.6063 3.0712 37 1 2.3776 -2.3534 4.7942 38 1 2.5956 0.1733 3.9377 39 1 1.0654 -0.5240 4.4944 40 1 0.5666 1.4558 1.3051 41 1 -0.6182 2.5116 3.2840 42 1 -0.0534 1.1256 4.3615 43 1 1.7963 3.1094 2.7870 44 1 2.3613 1.7230 3.8643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710007206.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:03 Heat of formation + Delta-G solvation = 57.045642 kcal Electronic energy + Delta-G solvation = -21278.878102 eV Core-core repulsion = 18619.163394 eV Total energy + Delta-G solvation = -2659.714708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84805 -37.79289 -36.79428 -34.63679 -32.96063 -31.73434 -28.99967 -27.18905 -26.54228 -24.72733 -23.29321 -22.91179 -21.30697 -21.06147 -19.53415 -18.58560 -17.28682 -16.93118 -16.53304 -15.61130 -15.33206 -15.15796 -14.96481 -14.70713 -14.38513 -13.85141 -13.79083 -13.52312 -13.25702 -12.88755 -12.85681 -12.54846 -12.46717 -12.14032 -12.02421 -11.85698 -11.76095 -11.60242 -11.39928 -11.29553 -11.17964 -10.97659 -10.88375 -10.83252 -10.44331 -10.35240 -8.72239 -8.17925 -6.10547 1.26289 1.31931 1.38773 2.36574 2.81072 3.14395 3.32675 3.86294 3.91717 4.00491 4.10995 4.21058 4.24460 4.35364 4.37146 4.38880 4.56688 4.63074 4.75725 4.83543 4.88685 4.91883 4.96170 5.02607 5.09059 5.12677 5.16362 5.18075 5.27900 5.32821 5.34078 5.35473 5.37867 5.45690 5.52426 5.61394 5.75462 5.77823 5.80163 6.05343 6.28174 6.40196 6.57837 6.90426 7.45639 8.96273 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.011372 C = 0.009496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.229141 B = 2461.555854 C = 2947.749915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.161 4.161 4 C 0.119 3.881 5 H 0.064 0.936 6 C 0.002 3.998 7 H 0.021 0.979 8 C -0.476 4.476 9 H 0.067 0.933 10 C 0.014 3.986 11 N -0.951 5.951 12 Si 0.921 3.079 13 H -0.276 1.276 14 H -0.306 1.306 15 H -0.254 1.254 16 C -0.126 4.126 17 C -0.120 4.120 18 C -0.109 4.109 19 C 0.050 3.950 20 N -0.505 5.505 21 C 0.006 3.994 22 C -0.159 4.159 23 C -0.244 4.244 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.150 0.850 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.239 -1.337 10.835 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 C -0.217 4.217 4 C 0.012 3.988 5 H 0.082 0.918 6 C -0.018 4.018 7 H 0.039 0.961 8 C -0.514 4.514 9 H 0.085 0.915 10 C -0.181 4.181 11 N -0.593 5.593 12 Si 0.750 3.250 13 H -0.203 1.203 14 H -0.234 1.234 15 H -0.178 1.178 16 C -0.163 4.163 17 C -0.158 4.158 18 C -0.147 4.147 19 C -0.077 4.077 20 N -0.227 5.227 21 C -0.103 4.103 22 C -0.196 4.196 23 C -0.283 4.283 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.104 0.896 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.496 -1.589 10.751 15.820 hybrid contribution 2.296 0.711 0.128 2.407 sum -9.200 -0.877 10.879 14.274 Atomic orbital electron populations 1.22323 0.94230 1.00850 1.03795 1.21059 0.95358 0.96290 0.96831 1.22697 1.00885 0.95327 1.02812 1.21167 0.90448 0.98064 0.89105 0.91829 1.19404 0.94239 0.93269 0.94929 0.96132 1.21559 0.96135 1.40064 0.93687 0.91470 1.25568 0.99092 0.96295 0.97164 1.70022 1.14712 1.49223 1.25343 0.86222 0.79130 0.76789 0.82860 1.20286 1.23444 1.17778 1.20905 0.99284 1.00046 0.96109 1.20680 0.97911 1.01010 0.96160 1.21362 0.93614 0.96909 1.02789 1.22017 0.97836 0.96882 0.90917 1.62103 1.43500 1.15448 1.01623 1.23642 1.02523 0.86453 0.97636 1.23208 0.93876 1.02828 0.99715 1.23537 0.96366 1.01494 1.06891 0.89093 0.92821 0.93460 0.93380 0.92708 0.94089 0.91305 0.93317 0.92625 0.95516 0.91532 0.94111 0.91055 0.88971 0.95333 0.89650 0.83341 0.87147 0.88241 0.89420 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 8.23 71.98 0.59 -4.03 16 2 C -0.08 -2.87 2.16 -10.79 -0.02 -2.89 16 3 C -0.16 -6.42 6.73 71.98 0.48 -5.94 16 4 C 0.12 4.45 1.80 43.87 0.08 4.52 16 5 H 0.06 2.41 6.59 -2.38 -0.02 2.39 16 6 C 0.00 0.08 0.48 -11.92 -0.01 0.07 16 7 H 0.02 0.96 5.21 -2.38 -0.01 0.95 16 8 C -0.48 -25.10 5.75 25.60 0.15 -24.95 16 9 H 0.07 3.84 4.83 -2.91 -0.01 3.82 16 10 C 0.01 0.81 5.42 84.65 0.46 1.27 16 11 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 12 Si 0.92 45.48 24.82 68.60 1.70 47.19 16 13 H -0.28 -13.35 6.87 99.48 0.68 -12.66 16 14 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 15 H -0.25 -11.85 6.37 99.48 0.63 -11.22 16 16 C -0.13 -5.10 4.01 28.86 0.12 -4.99 16 17 C -0.12 -3.94 5.30 28.85 0.15 -3.78 16 18 C -0.11 -2.95 5.63 30.21 0.17 -2.78 16 19 C 0.05 1.43 4.14 85.26 0.35 1.78 16 20 N -0.50 -15.72 3.97 -849.75 -3.38 -19.09 16 21 C 0.01 0.18 2.54 44.94 0.11 0.30 16 22 C -0.16 -3.73 9.94 30.59 0.30 -3.43 16 23 C -0.24 -7.12 8.48 30.62 0.26 -6.86 16 24 H 0.09 2.59 4.89 -2.39 -0.01 2.58 16 25 H 0.05 1.47 7.39 -2.39 -0.02 1.45 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 2.06 6.56 -2.38 -0.02 2.04 16 28 H 0.05 2.71 5.36 -2.39 -0.01 2.70 16 29 H 0.04 1.43 7.31 -2.39 -0.02 1.41 16 30 H 0.07 2.68 3.52 -2.39 -0.01 2.67 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.06 2.19 7.52 -2.39 -0.02 2.17 16 33 H 0.03 1.20 4.54 -2.39 -0.01 1.19 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.04 1.41 7.51 -2.39 -0.02 1.39 16 36 H 0.07 1.99 7.08 -2.39 -0.02 1.98 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 0.92 3.91 -2.39 -0.01 0.91 16 39 H 0.09 2.05 6.92 -2.39 -0.02 2.04 16 40 H 0.15 4.51 3.21 -2.39 -0.01 4.50 16 41 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.10 2.15 6.86 -2.39 -0.02 2.13 16 43 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 44 H 0.08 2.67 5.69 -2.39 -0.01 2.65 16 Total: -1.00 -59.88 287.61 2.73 -57.14 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.90 Total: 24.67 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 3.20 Total: -51.72 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -3.08 Total: -77.28 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.70 Total: 47.19 kcal Total: -59.88 2.73 -57.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007206.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.189 kcal (2) G-P(sol) polarization free energy of solvation -59.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds