Wall clock time and date at job start Mon Mar 30 2020 07:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 N 1.46902 * 109.46795 * 119.99451 * 2 1 3 5 5 C 1.48211 * 110.82957 * 282.29337 * 4 2 1 6 6 C 1.50445 * 112.71252 * 85.11263 * 5 4 2 7 7 C 1.54315 * 108.66578 * 93.49829 * 6 5 4 8 8 C 1.45887 * 112.17867 * 281.37981 * 7 6 5 9 9 C 1.54307 * 112.19297 * 61.11886 * 8 7 6 10 10 H 1.09001 * 109.63209 * 41.14735 * 9 8 7 11 11 C 1.50700 * 109.63239 * 161.75166 * 9 8 7 12 12 H 1.07996 * 120.00005 * 112.29086 * 11 9 8 13 13 C 1.37878 * 119.99786 * 292.29165 * 11 9 8 14 14 N 1.31513 * 119.99948 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99991 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47143 * 59.99930 * 15 13 11 17 17 H 1.48500 * 109.47264 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47172 * 299.99982 * 15 13 11 19 19 C 1.47997 * 111.00201 * 51.06838 * 4 2 1 20 20 H 1.08997 * 108.80965 * 312.20832 * 19 4 2 21 21 C 1.53000 * 108.81155 * 70.48393 * 19 4 2 22 22 C 1.52998 * 117.49893 * 2.69788 * 21 19 4 23 23 C 1.53003 * 117.49887 * 294.03873 * 21 19 4 24 24 H 1.09007 * 109.46546 * 63.41423 * 1 2 3 25 25 H 1.08996 * 109.46939 * 183.41186 * 1 2 3 26 26 H 1.08998 * 109.47116 * 303.41911 * 1 2 3 27 27 H 1.08990 * 109.47494 * 239.99566 * 2 1 3 28 28 H 1.09000 * 109.47402 * 169.03464 * 3 2 1 29 29 H 1.09011 * 109.46723 * 289.03060 * 3 2 1 30 30 H 1.08999 * 109.47922 * 49.02524 * 3 2 1 31 31 H 1.08999 * 109.13177 * 324.10265 * 5 4 2 32 32 H 1.09001 * 108.60762 * 205.76238 * 5 4 2 33 33 H 1.09000 * 109.63674 * 333.69589 * 6 5 4 34 34 H 1.08998 * 109.63369 * 213.29701 * 6 5 4 35 35 H 1.08993 * 108.94306 * 42.07451 * 7 6 5 36 36 H 1.09005 * 108.94035 * 160.77547 * 7 6 5 37 37 H 1.09004 * 108.93341 * 181.81804 * 8 7 6 38 38 H 1.08997 * 108.93481 * 300.41667 * 8 7 6 39 39 H 0.97005 * 120.00180 * 179.97438 * 14 13 11 40 40 H 1.08994 * 115.54780 * 148.36855 * 21 19 4 41 41 H 1.08998 * 117.50052 * 359.97438 * 22 21 19 42 42 H 1.08999 * 117.49879 * 145.02664 * 22 21 19 43 43 H 1.08993 * 117.49749 * 214.98389 * 23 21 19 44 44 H 1.09003 * 117.49705 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.9172 0.1823 2.3916 6 6 0.5579 0.1312 3.0345 7 6 0.5809 -0.9301 4.1546 8 6 0.4683 -2.2868 3.6301 9 6 1.6364 -2.6464 2.6881 10 1 2.5699 -2.2617 3.0989 11 6 1.7233 -4.1434 2.5380 12 1 1.4965 -4.6049 1.5883 13 6 2.0925 -4.9237 3.6130 14 7 2.3682 -4.3617 4.7696 15 14 2.2009 -6.7792 3.4267 16 1 3.2001 -7.1141 2.3805 17 1 2.6150 -7.3831 4.7187 18 1 0.8733 -7.3157 3.0331 19 6 1.3778 -2.0179 1.3460 20 1 0.3020 -1.9042 1.2125 21 6 1.9117 -2.9479 0.2546 22 6 2.9876 -2.3938 -0.6815 23 6 1.5620 -2.6088 -1.1958 24 1 -0.3633 0.4600 -0.9191 25 1 -0.3633 -1.0258 0.0612 26 1 -0.3633 0.5660 0.8577 27 1 1.8934 -0.5138 -0.8898 28 1 3.1123 1.4488 0.1955 29 1 1.8452 1.8967 -0.9716 30 1 1.5259 2.0098 0.7758 31 1 2.1293 1.2107 2.0994 32 1 2.6629 -0.1347 3.1207 33 1 -0.1899 -0.1393 2.2891 34 1 0.3165 1.1058 3.4586 35 1 1.5161 -0.8410 4.7073 36 1 -0.2506 -0.7449 4.8346 37 1 0.4575 -2.9886 4.4641 38 1 -0.4692 -2.3773 3.0817 39 1 2.6276 -4.9108 5.5261 40 1 1.9735 -4.0021 0.5242 41 1 3.3148 -1.3667 -0.5201 42 1 3.7570 -3.0838 -1.0281 43 1 1.3941 -3.4401 -1.8805 44 1 0.9512 -1.7235 -1.3725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:30 Heat of formation + Delta-G solvation = 62.696740 kcal Electronic energy + Delta-G solvation = -20889.254503 eV Core-core repulsion = 18229.784845 eV Total energy + Delta-G solvation = -2659.469658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01073 -36.02914 -35.24732 -32.58691 -30.76104 -30.10995 -27.52154 -26.57837 -24.41467 -23.36841 -21.59810 -21.01580 -19.77223 -19.46137 -18.26095 -16.22259 -15.74136 -15.41963 -14.51966 -14.18185 -14.00345 -13.77503 -13.14701 -12.81960 -12.66017 -12.49632 -12.26626 -11.95373 -11.61625 -11.48234 -11.18402 -10.94878 -10.81598 -10.71028 -10.65307 -10.55326 -10.36557 -10.28058 -9.78383 -9.58196 -9.37445 -9.35756 -8.89820 -8.76749 -8.40063 -8.23661 -7.35679 -5.95268 -3.97760 3.34297 3.39185 3.41487 4.39104 4.52003 4.77494 5.22354 5.36190 5.37990 5.44232 5.59686 5.61822 5.64525 5.76353 5.81799 5.85394 5.92116 5.96928 6.06226 6.12988 6.22584 6.28221 6.35164 6.38577 6.40161 6.52037 6.56666 6.62128 6.65470 6.80092 6.86708 6.88168 6.99160 7.16129 7.23239 7.36416 7.45404 7.77254 7.84643 7.95158 8.10722 8.24827 8.54544 9.05260 9.64875 11.13121 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.009031 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.353427 B = 3099.748178 C = 3887.971646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.055 3.945 3 C -0.148 4.148 4 N -0.534 5.534 5 C 0.055 3.945 6 C -0.156 4.156 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.061 3.939 10 H 0.043 0.957 11 C -0.512 4.512 12 H 0.071 0.929 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.128 3.872 20 H 0.037 0.963 21 C -0.133 4.133 22 C -0.177 4.177 23 C -0.224 4.224 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.258 0.742 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 8.747 -7.227 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.053 4.053 3 C -0.205 4.205 4 N -0.258 5.258 5 C -0.072 4.072 6 C -0.195 4.195 7 C -0.143 4.143 8 C -0.151 4.151 9 C 0.042 3.958 10 H 0.061 0.939 11 C -0.550 4.550 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.712 3.288 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 C 0.022 3.978 20 H 0.055 0.945 21 C -0.150 4.150 22 C -0.214 4.214 23 C -0.260 4.260 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.772 8.612 -7.077 11.286 hybrid contribution -0.882 -0.876 0.145 1.251 sum -2.654 7.736 -6.932 10.721 Atomic orbital electron populations 1.22773 0.98745 1.02679 1.01316 1.22208 0.92378 0.94461 0.96285 1.22010 1.01703 0.96079 1.00724 1.62191 1.58669 1.03116 1.01810 1.21982 0.96358 0.96338 0.92542 1.22194 0.99250 0.98594 0.99436 1.20567 1.00520 0.96542 0.96625 1.20602 0.98331 0.94557 1.01569 1.18379 0.94754 0.94476 0.88151 0.93896 1.21432 1.45773 0.91327 0.96444 0.91179 1.24969 0.95442 0.97998 0.95468 1.69947 1.46329 1.35052 1.01187 0.86794 0.78394 0.86372 0.77250 1.20311 1.21457 1.20420 1.21057 0.94447 0.85071 0.97234 0.94497 1.23406 1.00800 1.02954 0.87872 1.22984 0.90921 1.02822 1.04692 1.23317 1.00050 1.02732 0.99949 0.93373 0.91334 0.92107 0.88284 0.91917 0.93116 0.92764 0.91641 0.91105 0.91354 0.93307 0.92529 0.94781 0.90482 0.95899 0.93168 0.83847 0.87528 0.90720 0.90516 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.82 6.89 37.16 0.26 -2.57 16 2 C 0.05 0.82 1.82 -67.71 -0.12 0.69 16 3 C -0.15 -1.87 7.97 37.16 0.30 -1.57 16 4 N -0.53 -9.44 3.53 -219.81 -0.78 -10.22 16 5 C 0.06 0.94 4.84 -4.38 -0.02 0.92 16 6 C -0.16 -2.63 5.05 -27.32 -0.14 -2.77 16 7 C -0.11 -2.06 5.30 -29.41 -0.16 -2.22 16 8 C -0.11 -2.57 4.57 -29.41 -0.13 -2.71 16 9 C 0.06 1.46 1.55 -92.36 -0.14 1.31 16 10 H 0.04 1.16 7.08 -51.93 -0.37 0.80 16 11 C -0.51 -13.33 7.48 -34.44 -0.26 -13.58 16 12 H 0.07 1.78 4.89 -52.49 -0.26 1.52 16 13 C 0.06 1.69 5.19 -17.82 -0.09 1.60 16 14 N -0.89 -24.95 12.01 55.43 0.67 -24.29 16 15 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.13 2.59 1.33 -68.38 -0.09 2.50 16 20 H 0.04 0.77 3.95 -51.93 -0.21 0.56 16 21 C -0.13 -2.63 5.21 -90.62 -0.47 -3.10 16 22 C -0.18 -3.10 9.26 -26.69 -0.25 -3.35 16 23 C -0.22 -3.70 9.30 -26.69 -0.25 -3.94 16 24 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.07 1.09 5.18 -51.93 -0.27 0.82 16 26 H 0.06 0.88 5.55 -51.93 -0.29 0.59 16 27 H 0.10 1.50 3.59 -51.93 -0.19 1.32 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 31 H 0.07 0.97 5.00 -51.93 -0.26 0.71 16 32 H 0.07 1.35 6.61 -51.93 -0.34 1.01 16 33 H 0.07 1.17 4.10 -51.93 -0.21 0.96 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 2.00 6.53 -51.93 -0.34 1.66 16 38 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.14 3.17 4.52 -51.93 -0.23 2.94 16 41 H 0.11 1.85 5.45 -51.93 -0.28 1.57 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.41 4.41 -51.93 -0.23 1.18 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -26.35 295.92 -8.93 -35.28 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.69 Total: 7.64 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -1.57 Total: -28.79 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.11 Total: -34.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.35 -8.93 -35.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.981 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds