Wall clock time and date at job start Mon Mar 30 2020 07:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47043 * 2 1 4 4 N 1.46894 * 109.47182 * 120.00153 * 2 1 3 5 5 C 1.47802 * 111.00140 * 311.59062 * 4 2 1 6 6 C 1.45866 * 112.92014 * 206.13594 * 5 4 2 7 7 C 1.54505 * 111.58718 * 298.66764 * 6 5 4 8 8 C 1.50463 * 108.85197 * 77.19487 * 7 6 5 9 9 C 1.54299 * 113.03088 * 267.84211 * 8 7 6 10 10 H 1.08996 * 108.91893 * 281.06621 * 9 8 7 11 11 C 1.50696 * 108.91543 * 162.42272 * 9 8 7 12 12 H 1.08006 * 119.99882 * 240.00101 * 11 9 8 13 13 C 1.37878 * 120.00406 * 60.00306 * 11 9 8 14 14 N 1.31514 * 119.99708 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00439 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47036 * 89.99580 * 15 13 11 17 17 H 1.48500 * 109.47169 * 209.99793 * 15 13 11 18 18 H 1.48500 * 109.46739 * 330.00071 * 15 13 11 19 19 C 1.44274 * 111.00081 * 73.56882 * 4 2 1 20 20 H 1.09004 * 108.97845 * 261.33610 * 19 4 2 21 21 C 1.53002 * 108.97545 * 20.04850 * 19 4 2 22 22 C 1.53003 * 117.49401 * 256.54561 * 21 19 4 23 23 C 1.53000 * 60.00003 * 252.51366 * 22 21 19 24 24 H 1.09000 * 109.46929 * 68.66936 * 1 2 3 25 25 H 1.09003 * 109.46759 * 188.66341 * 1 2 3 26 26 H 1.08995 * 109.47140 * 308.66417 * 1 2 3 27 27 H 1.09000 * 109.47053 * 240.00235 * 2 1 3 28 28 H 1.09003 * 109.47303 * 175.13531 * 3 2 1 29 29 H 1.08995 * 109.47468 * 295.14220 * 3 2 1 30 30 H 1.09007 * 109.47060 * 55.14245 * 3 2 1 31 31 H 1.09007 * 108.79260 * 327.01846 * 5 4 2 32 32 H 1.09001 * 108.79703 * 85.35248 * 5 4 2 33 33 H 1.08994 * 109.05699 * 59.21183 * 6 5 4 34 34 H 1.09004 * 109.05637 * 178.19526 * 6 5 4 35 35 H 1.09004 * 109.57734 * 317.38069 * 7 6 5 36 36 H 1.09001 * 109.57329 * 197.00172 * 7 6 5 37 37 H 1.09004 * 108.77289 * 146.93403 * 8 7 6 38 38 H 1.08994 * 108.77168 * 28.75897 * 8 7 6 39 39 H 0.97003 * 120.00131 * 180.02562 * 14 13 11 40 40 H 1.08997 * 115.55204 * 42.25746 * 21 19 4 41 41 H 1.08999 * 117.50221 * 0.02562 * 22 21 19 42 42 H 1.09004 * 117.49220 * 145.02436 * 22 21 19 43 43 H 1.09000 * 117.49983 * 252.50963 * 23 22 21 44 44 H 1.09000 * 117.49681 * 107.49206 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3327 -0.2012 2.4123 6 6 2.1319 -0.3613 3.6220 7 6 2.4501 -1.8474 3.9005 8 6 3.5516 -2.2902 2.9760 9 6 3.0262 -2.9044 1.6617 10 1 2.7131 -3.9310 1.8517 11 6 4.1405 -2.9139 0.6472 12 1 4.0281 -2.3774 -0.2834 13 6 5.3036 -3.6074 0.9070 14 7 5.4406 -4.2602 2.0404 15 14 6.6845 -3.6197 -0.3509 16 1 7.6000 -2.4795 -0.0921 17 1 7.4391 -4.8943 -0.2450 18 1 6.1122 -3.4951 -1.7155 19 6 1.8329 -2.1185 1.0855 20 1 0.9286 -2.4017 1.6243 21 6 1.6641 -2.4819 -0.3911 22 6 0.2495 -2.7916 -0.8851 23 6 1.2679 -3.9219 -0.7234 24 1 -0.3633 0.3738 -0.9573 25 1 -0.3633 -1.0160 0.1548 26 1 -0.3633 0.6420 0.8024 27 1 1.8934 -0.5138 -0.8900 28 1 3.1266 1.4438 0.0872 29 1 1.7495 1.9306 -0.9302 30 1 1.6073 1.9809 0.8433 31 1 1.1021 0.8561 2.2813 32 1 0.3995 -0.7510 2.5344 33 1 3.0666 0.1872 3.5063 34 1 1.5815 0.0485 4.4690 35 1 1.5599 -2.4510 3.7233 36 1 2.7727 -1.9641 4.9351 37 1 4.1637 -3.0317 3.4895 38 1 4.1755 -1.4292 2.7361 39 1 6.2590 -4.7479 2.2233 40 1 2.3383 -1.9735 -1.0804 41 1 -0.5609 -2.7361 -0.1583 42 1 -0.0072 -2.4868 -1.8997 43 1 1.6812 -4.3608 -1.6315 44 1 1.1276 -4.6103 0.1099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:35 Heat of formation + Delta-G solvation = 37.032246 kcal Electronic energy + Delta-G solvation = -20818.725200 eV Core-core repulsion = 18158.142646 eV Total energy + Delta-G solvation = -2660.582554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82294 -36.04290 -35.02360 -32.82779 -30.79288 -30.12855 -26.89490 -26.14283 -24.47848 -23.62146 -21.76259 -21.07056 -20.22370 -18.90135 -17.78011 -16.38041 -15.80997 -15.02297 -14.64617 -14.20870 -13.93560 -13.37263 -13.28513 -13.02045 -12.74439 -12.30157 -12.06048 -11.82009 -11.62300 -11.48040 -11.28040 -11.05537 -10.87255 -10.74767 -10.71522 -10.52100 -10.40306 -10.01649 -9.70536 -9.58444 -9.45672 -9.36532 -9.19827 -8.80832 -8.38518 -8.14455 -7.33690 -5.80376 -3.79445 3.40179 3.46881 3.49140 4.43986 4.58754 4.62669 5.25219 5.27421 5.46556 5.52160 5.56268 5.61278 5.73442 5.75014 5.87889 5.88831 5.94751 6.02007 6.06774 6.12774 6.17055 6.23227 6.31916 6.36787 6.42563 6.51859 6.54967 6.62871 6.65485 6.69719 6.75034 6.87618 6.94401 6.97861 7.22857 7.42756 7.63069 7.87619 7.96022 8.06234 8.27632 8.31835 8.70506 9.20478 9.80999 11.27470 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.009709 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.183189 B = 2883.083618 C = 3351.737854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 C -0.140 4.140 4 N -0.498 5.498 5 C 0.062 3.938 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.097 4.097 9 C 0.070 3.930 10 H 0.020 0.980 11 C -0.479 4.479 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.882 3.118 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.129 3.871 20 H 0.018 0.982 21 C -0.116 4.116 22 C -0.207 4.207 23 C -0.162 4.162 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.255 0.745 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 6.932 -1.808 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.042 4.042 3 C -0.197 4.197 4 N -0.221 5.221 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.135 4.135 9 C 0.051 3.949 10 H 0.038 0.962 11 C -0.517 4.517 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.711 3.289 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.203 1.203 19 C 0.020 3.980 20 H 0.036 0.964 21 C -0.134 4.134 22 C -0.244 4.244 23 C -0.200 4.200 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.784 6.919 -1.672 11.306 hybrid contribution -0.018 -0.225 -0.734 0.768 sum -8.802 6.694 -2.406 11.316 Atomic orbital electron populations 1.22746 0.98464 1.02580 1.00834 1.21932 0.91984 0.94823 0.95432 1.21830 1.02104 0.95674 1.00130 1.61906 1.55269 1.04437 1.00487 1.20933 0.94993 0.98966 0.91631 1.20609 1.00499 0.98241 0.95769 1.21493 1.00290 0.94437 0.99075 1.21225 0.95847 1.00498 0.95912 1.19050 0.91004 0.92384 0.92502 0.96181 1.21138 0.99305 1.28968 1.02335 0.92588 1.24928 0.98216 0.96052 0.95114 1.69930 1.26595 1.33904 1.23282 0.86761 0.82969 0.76982 0.82188 1.21084 1.21755 1.20277 1.21270 0.97998 0.86929 0.91758 0.96373 1.22442 0.94488 0.98339 0.98145 1.23172 0.93744 1.06264 1.01175 1.22737 1.02248 0.92364 1.02609 0.93355 0.91321 0.93531 0.88802 0.91802 0.93374 0.93494 0.92522 0.95893 0.91642 0.93587 0.93750 0.94050 0.91250 0.93409 0.93553 0.87294 0.89867 0.89977 0.89651 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.58 7.64 37.16 0.28 -2.30 16 2 C 0.07 1.05 2.42 -67.71 -0.16 0.88 16 3 C -0.14 -1.98 9.18 37.16 0.34 -1.64 16 4 N -0.50 -9.09 4.15 -223.46 -0.93 -10.01 16 5 C 0.06 1.03 3.52 -6.70 -0.02 1.00 16 6 C -0.11 -1.92 5.53 -29.32 -0.16 -2.08 16 7 C -0.12 -2.23 5.60 -27.21 -0.15 -2.38 16 8 C -0.10 -2.27 4.27 -27.32 -0.12 -2.39 16 9 C 0.07 1.67 1.90 -90.54 -0.17 1.49 16 10 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 11 C -0.48 -12.60 7.66 -34.44 -0.26 -12.86 16 12 H 0.06 1.48 6.01 -52.48 -0.32 1.16 16 13 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 14 N -0.90 -25.70 11.52 55.43 0.64 -25.06 16 15 Si 0.88 21.60 29.54 -169.99 -5.02 16.57 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 C 0.13 2.56 1.12 -68.56 -0.08 2.48 16 20 H 0.02 0.37 6.29 -51.93 -0.33 0.04 16 21 C -0.12 -2.14 1.86 -90.62 -0.17 -2.30 16 22 C -0.21 -3.18 7.86 -26.73 -0.21 -3.39 16 23 C -0.16 -2.88 10.00 -26.73 -0.27 -3.14 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.99 4.12 -51.93 -0.21 0.78 16 26 H 0.05 0.61 6.92 -51.93 -0.36 0.25 16 27 H 0.09 1.58 4.99 -51.93 -0.26 1.32 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.63 6.65 -51.93 -0.35 0.28 16 31 H 0.06 0.85 5.60 -51.93 -0.29 0.56 16 32 H 0.02 0.38 7.02 -51.93 -0.36 0.01 16 33 H 0.06 1.18 7.59 -51.93 -0.39 0.78 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.86 7.15 -51.93 -0.37 0.48 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.83 6.64 -51.93 -0.34 1.49 16 38 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 40 H 0.11 2.14 5.30 -51.93 -0.28 1.86 16 41 H 0.08 1.24 6.92 -51.93 -0.36 0.88 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -27.20 310.38 -9.41 -36.61 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.53 Total: 2.39 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.25 Total: -25.17 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.29 Total: -35.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.20 -9.41 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.643 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds