Wall clock time and date at job start Mon Mar 30 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09001 * 109.46756 * 303.06533 * 3 2 1 5 5 C 1.50694 * 109.47532 * 183.06156 * 3 2 1 6 6 H 1.07996 * 120.00394 * 240.00101 * 5 3 2 7 7 C 1.37877 * 119.99958 * 60.00137 * 5 3 2 8 8 N 1.31513 * 119.99888 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47255 * 89.99552 * 9 7 5 11 11 H 1.48501 * 109.47389 * 209.99915 * 9 7 5 12 12 H 1.48501 * 109.46917 * 329.99993 * 9 7 5 13 13 N 1.46905 * 109.47246 * 63.05911 * 3 2 1 14 14 C 1.46903 * 110.99588 * 64.79398 * 13 3 2 15 15 C 1.46892 * 111.00447 * 188.74618 * 13 3 2 16 16 C 1.53002 * 109.47032 * 160.21001 * 15 13 3 17 17 C 1.52308 * 115.91087 * 111.83240 * 16 15 13 18 18 C 1.51367 * 60.10126 * 106.18606 * 17 16 15 19 19 H 1.08991 * 115.85637 * 251.98604 * 18 17 16 20 20 C 1.52545 * 117.52976 * 111.34450 * 18 17 16 21 21 C 1.52885 * 110.48206 * 270.71199 * 20 18 17 22 22 C 1.53302 * 108.57897 * 53.45645 * 21 20 18 23 23 C 1.52065 * 114.64083 * 325.58697 * 16 15 13 24 24 H 1.08998 * 109.47760 * 54.90611 * 1 2 3 25 25 H 1.09003 * 109.47440 * 174.91120 * 1 2 3 26 26 H 1.09001 * 109.46902 * 294.90665 * 1 2 3 27 27 H 1.09002 * 109.46976 * 240.00117 * 2 1 3 28 28 H 1.08999 * 109.47040 * 120.00175 * 2 1 3 29 29 H 0.97002 * 119.99908 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46963 * 183.95896 * 14 13 3 31 31 H 1.08994 * 109.47215 * 63.95611 * 14 13 3 32 32 H 1.08998 * 109.47243 * 303.95410 * 14 13 3 33 33 H 1.08994 * 109.47442 * 280.21470 * 15 13 3 34 34 H 1.09004 * 109.46808 * 40.21421 * 15 13 3 35 35 H 1.08991 * 117.53368 * 213.89763 * 17 16 15 36 36 H 1.09000 * 117.53870 * 359.15135 * 17 16 15 37 37 H 1.08990 * 110.04750 * 149.85332 * 20 18 17 38 38 H 1.08997 * 108.21475 * 30.40049 * 20 18 17 39 39 H 1.09000 * 109.61567 * 293.73049 * 21 20 18 40 40 H 1.08997 * 109.62092 * 173.18540 * 21 20 18 41 41 H 1.08999 * 109.61245 * 165.82863 * 22 21 20 42 42 H 1.08999 * 109.62129 * 45.28822 * 22 21 20 43 43 H 1.09012 * 109.26810 * 314.63707 * 23 16 15 44 44 H 1.08997 * 109.26965 * 74.13778 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6325 1.9718 -0.8613 5 6 3.5451 1.4431 -0.0759 6 1 4.1254 1.8964 0.7140 7 6 4.1812 0.8649 -1.1538 8 7 3.4745 0.3124 -2.1156 9 14 6.0469 0.8650 -1.2476 10 1 6.5754 -0.3598 -0.5952 11 1 6.4710 0.8903 -2.6706 12 1 6.5774 2.0648 -0.5516 13 7 1.6117 2.1133 1.2347 14 6 2.2344 1.4951 2.4129 15 6 1.9020 3.5522 1.1800 16 6 1.0362 4.2865 2.2058 17 6 1.7783 4.8986 3.3867 18 6 1.2378 5.7914 2.2904 19 1 1.9815 6.2335 1.6275 20 6 0.0740 6.7131 2.6412 21 6 -1.2599 6.0051 2.4026 22 6 -1.2481 4.6727 3.1606 23 6 -0.3486 3.6918 2.4084 24 1 -0.3634 0.5908 -0.8408 25 1 -0.3634 -1.0236 -0.0912 26 1 -0.3633 0.4328 0.9321 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.9221 -0.0947 -2.8738 30 1 1.8467 1.9645 3.3170 31 1 3.3147 1.6322 2.3669 32 1 2.0037 0.4300 2.4290 33 1 2.9548 3.7194 1.4069 34 1 1.6811 3.9297 0.1815 35 1 1.2677 4.9138 4.3495 36 1 2.8589 4.7619 3.4284 37 1 0.1169 7.6170 2.0338 38 1 0.1572 6.9811 3.6945 39 1 -1.3895 5.8185 1.3365 40 1 -2.0756 6.6278 2.7697 41 1 -2.2609 4.2732 3.2141 42 1 -0.8593 4.8276 4.1671 43 1 -0.7908 3.4708 1.4368 44 1 -0.2635 2.7695 2.9829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710413584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:26 Heat of formation + Delta-G solvation = 5.326030 kcal Electronic energy + Delta-G solvation = -19903.023733 eV Core-core repulsion = 17241.066294 eV Total energy + Delta-G solvation = -2661.957439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75338 -36.85283 -33.46050 -32.42242 -31.20240 -30.25940 -26.73207 -26.64191 -24.37062 -23.86902 -22.20721 -21.28487 -20.28486 -18.86537 -17.78737 -16.36922 -15.50330 -15.13865 -14.28465 -14.09020 -13.98467 -13.60974 -13.42738 -13.01420 -12.92143 -12.58721 -12.40265 -11.84430 -11.72495 -11.46048 -11.18143 -11.04905 -10.90841 -10.79176 -10.72882 -10.60111 -10.48465 -10.38740 -10.02805 -9.98246 -9.72291 -9.56028 -9.20514 -9.00359 -8.94720 -8.34505 -7.06171 -5.96199 -4.09576 3.26888 3.34304 3.36884 4.08478 4.40852 4.79557 4.98493 5.03772 5.18511 5.28604 5.38890 5.40992 5.54494 5.60839 5.74071 5.88176 5.91019 6.05705 6.06069 6.17082 6.27279 6.32776 6.37280 6.40303 6.44525 6.48065 6.50782 6.56008 6.62497 6.70857 6.77477 6.79999 6.86403 6.91880 7.16280 7.23901 7.40530 7.65550 7.79878 8.03531 8.21000 8.38247 8.53057 9.01555 9.57932 11.02585 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.006364 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.975771 B = 4398.561828 C = 4975.679224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.531 5.531 14 C 0.036 3.964 15 C 0.099 3.901 16 C -0.089 4.089 17 C -0.182 4.182 18 C -0.152 4.152 19 H 0.094 0.906 20 C -0.084 4.084 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.060 4.060 24 H 0.038 0.962 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.040 0.960 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 8.009 8.769 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.254 5.254 14 C -0.112 4.112 15 C -0.030 4.030 16 C -0.089 4.089 17 C -0.219 4.219 18 C -0.171 4.171 19 H 0.112 0.888 20 C -0.121 4.121 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.097 4.097 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.607 7.845 8.619 13.917 hybrid contribution 2.223 0.076 -0.192 2.232 sum -5.384 7.921 8.427 12.757 Atomic orbital electron populations 1.21686 0.98865 0.98225 1.00531 1.21589 0.92178 0.99233 1.01882 1.19310 0.92605 0.91052 0.86351 0.94587 1.21771 0.92896 1.37383 1.06010 0.92671 1.24906 0.97774 0.95137 0.95609 1.69876 1.34848 1.37906 1.09811 0.86709 0.86454 0.78325 0.77176 1.20729 1.21214 1.20169 1.62375 1.57519 1.01076 1.04409 1.22178 0.97225 0.99181 0.92660 1.21478 0.95183 0.89575 0.96734 1.21160 0.97112 0.92294 0.98366 1.22855 0.99639 1.05573 0.93800 1.21835 1.00171 0.92532 1.02554 0.88822 1.20954 0.93465 0.97111 1.00605 1.21548 0.96465 0.96545 1.00968 1.21691 0.99611 0.95886 0.99024 1.20532 0.91401 0.97042 1.00716 0.94260 0.95770 0.93481 0.89155 0.94882 0.92956 0.94112 0.95586 0.92412 0.95031 0.91645 0.89591 0.89571 0.92077 0.92464 0.91612 0.92677 0.92335 0.92594 0.91155 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.72 37.15 0.36 -2.39 16 2 C -0.11 -2.60 5.09 -26.74 -0.14 -2.74 16 3 C 0.21 5.18 1.71 -68.87 -0.12 5.07 16 4 H 0.04 0.98 7.86 -51.93 -0.41 0.57 16 5 C -0.54 -14.41 7.34 -34.44 -0.25 -14.66 16 6 H 0.06 1.49 5.95 -52.49 -0.31 1.18 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.90 3.21 -236.30 -0.76 -11.66 16 14 C 0.04 0.71 8.61 60.07 0.52 1.23 16 15 C 0.10 1.91 4.49 -3.83 -0.02 1.89 16 16 C -0.09 -1.38 1.80 -155.81 -0.28 -1.66 16 17 C -0.18 -2.57 9.17 -27.91 -0.26 -2.83 16 18 C -0.15 -2.11 5.66 -92.15 -0.52 -2.63 16 19 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 20 C -0.08 -0.98 5.87 -27.02 -0.16 -1.14 16 21 C -0.12 -1.35 5.94 -26.63 -0.16 -1.51 16 22 C -0.12 -1.51 5.70 -26.64 -0.15 -1.66 16 23 C -0.06 -0.88 4.69 -27.27 -0.13 -1.00 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 27 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 28 H 0.03 0.77 6.30 -51.93 -0.33 0.44 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.04 0.71 7.23 -51.93 -0.38 0.33 16 31 H 0.03 0.55 6.29 -51.93 -0.33 0.22 16 32 H 0.06 1.15 6.19 -51.93 -0.32 0.83 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 35 H 0.09 1.13 7.28 -51.93 -0.38 0.75 16 36 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.66 7.12 -51.93 -0.37 0.29 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.07 1.07 7.51 -51.93 -0.39 0.68 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -26.56 326.24 -9.67 -36.23 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.04 Total: 0.87 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.39 Total: -22.27 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.13 Total: -35.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.56 -9.67 -36.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710413584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.557 kcal (2) G-P(sol) polarization free energy of solvation -26.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds