Wall clock time and date at job start Mon Mar 30 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09001 * 109.46756 * 303.06533 * 3 2 1 5 5 C 1.50694 * 109.47532 * 183.06156 * 3 2 1 6 6 H 1.07996 * 120.00394 * 240.00101 * 5 3 2 7 7 C 1.37877 * 119.99958 * 60.00137 * 5 3 2 8 8 N 1.31513 * 119.99888 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47255 * 89.99552 * 9 7 5 11 11 H 1.48501 * 109.47389 * 209.99915 * 9 7 5 12 12 H 1.48501 * 109.46917 * 329.99993 * 9 7 5 13 13 N 1.46905 * 109.47246 * 63.05911 * 3 2 1 14 14 C 1.46903 * 110.99588 * 64.79398 * 13 3 2 15 15 C 1.46892 * 111.00447 * 188.74618 * 13 3 2 16 16 C 1.53002 * 109.47032 * 160.21001 * 15 13 3 17 17 C 1.52308 * 115.91087 * 111.83240 * 16 15 13 18 18 C 1.51367 * 60.10126 * 106.18606 * 17 16 15 19 19 H 1.08991 * 115.85637 * 251.98604 * 18 17 16 20 20 C 1.52545 * 117.52976 * 111.34450 * 18 17 16 21 21 C 1.52885 * 110.48206 * 270.71199 * 20 18 17 22 22 C 1.53302 * 108.57897 * 53.45645 * 21 20 18 23 23 C 1.52065 * 114.64083 * 325.58697 * 16 15 13 24 24 H 1.08998 * 109.47760 * 54.90611 * 1 2 3 25 25 H 1.09003 * 109.47440 * 174.91120 * 1 2 3 26 26 H 1.09001 * 109.46902 * 294.90665 * 1 2 3 27 27 H 1.09002 * 109.46976 * 240.00117 * 2 1 3 28 28 H 1.08999 * 109.47040 * 120.00175 * 2 1 3 29 29 H 0.97002 * 119.99908 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.46963 * 183.95896 * 14 13 3 31 31 H 1.08994 * 109.47215 * 63.95611 * 14 13 3 32 32 H 1.08998 * 109.47243 * 303.95410 * 14 13 3 33 33 H 1.08994 * 109.47442 * 280.21470 * 15 13 3 34 34 H 1.09004 * 109.46808 * 40.21421 * 15 13 3 35 35 H 1.08991 * 117.53368 * 213.89763 * 17 16 15 36 36 H 1.09000 * 117.53870 * 359.15135 * 17 16 15 37 37 H 1.08990 * 110.04750 * 149.85332 * 20 18 17 38 38 H 1.08997 * 108.21475 * 30.40049 * 20 18 17 39 39 H 1.09000 * 109.61567 * 293.73049 * 21 20 18 40 40 H 1.08997 * 109.62092 * 173.18540 * 21 20 18 41 41 H 1.08999 * 109.61245 * 165.82863 * 22 21 20 42 42 H 1.08999 * 109.62129 * 45.28822 * 22 21 20 43 43 H 1.09012 * 109.26810 * 314.63707 * 23 16 15 44 44 H 1.08997 * 109.26965 * 74.13778 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6325 1.9718 -0.8613 5 6 3.5451 1.4431 -0.0759 6 1 4.1254 1.8964 0.7140 7 6 4.1812 0.8649 -1.1538 8 7 3.4745 0.3124 -2.1156 9 14 6.0469 0.8650 -1.2476 10 1 6.5754 -0.3598 -0.5952 11 1 6.4710 0.8903 -2.6706 12 1 6.5774 2.0648 -0.5516 13 7 1.6117 2.1133 1.2347 14 6 2.2344 1.4951 2.4129 15 6 1.9020 3.5522 1.1800 16 6 1.0362 4.2865 2.2058 17 6 1.7783 4.8986 3.3867 18 6 1.2378 5.7914 2.2904 19 1 1.9815 6.2335 1.6275 20 6 0.0740 6.7131 2.6412 21 6 -1.2599 6.0051 2.4026 22 6 -1.2481 4.6727 3.1606 23 6 -0.3486 3.6918 2.4084 24 1 -0.3634 0.5908 -0.8408 25 1 -0.3634 -1.0236 -0.0912 26 1 -0.3633 0.4328 0.9321 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.9221 -0.0947 -2.8738 30 1 1.8467 1.9645 3.3170 31 1 3.3147 1.6322 2.3669 32 1 2.0037 0.4300 2.4290 33 1 2.9548 3.7194 1.4069 34 1 1.6811 3.9297 0.1815 35 1 1.2677 4.9138 4.3495 36 1 2.8589 4.7619 3.4284 37 1 0.1169 7.6170 2.0338 38 1 0.1572 6.9811 3.6945 39 1 -1.3895 5.8185 1.3365 40 1 -2.0756 6.6278 2.7697 41 1 -2.2609 4.2732 3.2141 42 1 -0.8593 4.8276 4.1671 43 1 -0.7908 3.4708 1.4368 44 1 -0.2635 2.7695 2.9829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710413584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:26 Heat of formation + Delta-G solvation = -6.709891 kcal Electronic energy + Delta-G solvation = -19903.545650 eV Core-core repulsion = 17241.066294 eV Total energy + Delta-G solvation = -2662.479356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96594 -38.57987 -34.94940 -34.00611 -32.93493 -31.44425 -28.67883 -28.19011 -25.75977 -25.39445 -23.83175 -22.42986 -21.50436 -20.75749 -18.92920 -18.41472 -17.03574 -16.71641 -16.09613 -15.58120 -15.13102 -14.81415 -14.74448 -14.64209 -14.26076 -14.13443 -13.97735 -13.41156 -13.12311 -12.94426 -12.89943 -12.75659 -12.59584 -12.33082 -12.27562 -12.05147 -11.92171 -11.66983 -11.59657 -11.47882 -11.38907 -11.09297 -10.91975 -10.49613 -10.43361 -10.16764 -8.89517 -8.02767 -6.26163 1.34252 1.36209 1.44486 2.38316 2.89470 3.14251 3.44392 3.81708 4.03413 4.03950 4.15057 4.29527 4.44024 4.48456 4.52975 4.66555 4.71798 4.76203 4.81358 4.81644 4.90120 4.93162 4.96570 5.00463 5.07257 5.13021 5.14925 5.22014 5.31396 5.35795 5.39859 5.44199 5.47194 5.50934 5.53749 5.62807 5.64942 5.70547 5.81892 6.08217 6.21981 6.41212 6.71007 6.96823 7.44834 8.91205 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.006364 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.975771 B = 4398.561828 C = 4975.679224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.521 5.521 14 C 0.044 3.956 15 C 0.105 3.895 16 C -0.103 4.103 17 C -0.170 4.170 18 C -0.145 4.145 19 H 0.084 0.916 20 C -0.081 4.081 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.054 4.054 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.006 0.994 32 H 0.055 0.945 33 H 0.011 0.989 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 8.982 10.675 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.244 5.244 14 C -0.104 4.104 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.207 4.207 18 C -0.164 4.164 19 H 0.103 0.897 20 C -0.119 4.119 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.091 4.091 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.398 8.826 10.536 16.107 hybrid contribution 2.484 -0.206 -0.804 2.619 sum -5.914 8.620 9.732 14.283 Atomic orbital electron populations 1.21538 0.96150 0.99506 1.00816 1.21425 0.94554 0.98074 1.00266 1.19083 0.91356 0.91528 0.86832 0.98262 1.22000 0.94204 1.37036 1.05789 0.93503 1.25597 1.01767 0.95018 0.95436 1.70002 1.36300 1.38488 1.10201 0.85780 0.81686 0.78300 0.77192 1.20132 1.20800 1.20094 1.62356 1.57046 1.01641 1.03309 1.22142 0.95942 0.99260 0.93067 1.21414 0.94939 0.89067 0.96949 1.20992 0.97266 0.93503 0.98597 1.22876 0.99160 1.04497 0.94187 1.21939 1.00893 0.91661 1.01886 0.89744 1.20992 0.92320 0.96783 1.01765 1.21551 0.97114 0.96548 1.00201 1.21651 0.99532 0.95371 0.98993 1.20450 0.91178 0.97558 0.99952 0.95002 0.93750 0.92282 0.92185 0.94927 0.92948 0.91399 0.97568 0.92600 0.97050 0.94090 0.87568 0.90438 0.90999 0.90864 0.92956 0.90343 0.91108 0.91543 0.93212 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.72 71.98 0.70 -4.22 16 2 C -0.10 -5.03 5.09 30.59 0.16 -4.87 16 3 C 0.22 11.05 1.71 44.16 0.08 11.13 16 4 H 0.00 -0.03 7.86 -2.39 -0.02 -0.05 16 5 C -0.55 -30.21 7.34 25.60 0.19 -30.03 16 6 H 0.05 2.60 5.95 -2.91 -0.02 2.58 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.54 11.30 21.45 0.24 -52.30 16 9 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.52 -21.82 3.21 -901.50 -2.90 -24.72 16 14 C 0.04 1.74 8.61 127.69 1.10 2.84 16 15 C 0.11 4.17 4.49 86.31 0.39 4.56 16 16 C -0.10 -3.14 1.80 -53.02 -0.10 -3.23 16 17 C -0.17 -4.49 9.17 29.83 0.27 -4.22 16 18 C -0.14 -3.80 5.66 -11.78 -0.07 -3.86 16 19 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 20 C -0.08 -1.64 5.87 30.40 0.18 -1.47 16 21 C -0.12 -2.33 5.94 30.66 0.18 -2.14 16 22 C -0.12 -2.51 5.70 30.65 0.17 -2.33 16 23 C -0.05 -1.52 4.69 30.24 0.14 -1.37 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.21 7.84 -2.39 -0.02 2.19 16 27 H 0.06 3.27 5.99 -2.39 -0.01 3.25 16 28 H 0.03 1.53 6.30 -2.39 -0.02 1.52 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.07 2.28 7.23 -2.39 -0.02 2.26 16 31 H 0.01 0.25 6.29 -2.39 -0.02 0.24 16 32 H 0.06 2.19 6.19 -2.39 -0.01 2.18 16 33 H 0.01 0.49 7.13 -2.39 -0.02 0.47 16 34 H 0.04 1.78 7.75 -2.38 -0.02 1.76 16 35 H 0.11 2.40 7.28 -2.39 -0.02 2.39 16 36 H 0.08 2.19 7.94 -2.39 -0.02 2.17 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 39 H 0.05 1.19 8.04 -2.39 -0.02 1.17 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.30 7.12 -2.39 -0.02 1.28 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.78 7.51 -2.39 -0.02 1.76 16 Total: -1.00 -58.13 326.24 4.15 -53.98 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.94 Total: 14.42 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.84 Total: -37.59 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.65 Total: -77.02 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -58.13 4.15 -53.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710413584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.266 kcal (2) G-P(sol) polarization free energy of solvation -58.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds