Wall clock time and date at job start Mon Mar 30 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 H 1.08999 * 109.47438 * 297.06213 * 3 2 1 5 5 C 1.50707 * 109.47002 * 177.06096 * 3 2 1 6 6 H 1.07995 * 120.00115 * 240.00065 * 5 3 2 7 7 C 1.37878 * 119.99891 * 60.00394 * 5 3 2 8 8 N 1.31519 * 119.99546 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46901 * 89.99561 * 9 7 5 11 11 H 1.48496 * 109.47285 * 209.99714 * 9 7 5 12 12 H 1.48502 * 109.46831 * 330.00188 * 9 7 5 13 13 N 1.46896 * 109.46957 * 57.06430 * 3 2 1 14 14 C 1.46904 * 111.00159 * 57.76652 * 13 3 2 15 15 C 1.46900 * 111.00176 * 181.71761 * 13 3 2 16 16 C 1.53004 * 109.46921 * 76.94052 * 15 13 3 17 17 C 1.52296 * 115.29503 * 279.57208 * 16 15 13 18 18 C 1.52069 * 115.93138 * 211.48631 * 16 15 13 19 19 H 1.09001 * 117.25632 * 358.62239 * 18 16 15 20 20 C 1.52716 * 120.52153 * 209.99684 * 18 16 15 21 21 C 1.52868 * 110.15198 * 21.47185 * 20 18 16 22 22 C 1.53298 * 108.58378 * 305.47729 * 21 20 18 23 23 C 1.52076 * 114.63508 * 64.87046 * 16 15 13 24 24 H 1.09002 * 109.47430 * 184.47422 * 1 2 3 25 25 H 1.09000 * 109.47182 * 304.47509 * 1 2 3 26 26 H 1.09002 * 109.46784 * 64.47127 * 1 2 3 27 27 H 1.09003 * 109.47103 * 239.99912 * 2 1 3 28 28 H 1.09001 * 109.46760 * 119.99771 * 2 1 3 29 29 H 0.97000 * 119.99379 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46919 * 179.87715 * 14 13 3 31 31 H 1.08997 * 109.46968 * 299.87399 * 14 13 3 32 32 H 1.08999 * 109.47125 * 59.87897 * 14 13 3 33 33 H 1.09004 * 109.47241 * 316.94632 * 15 13 3 34 34 H 1.08993 * 109.47641 * 196.94378 * 15 13 3 35 35 H 1.09002 * 117.54050 * 0.57191 * 17 16 15 36 36 H 1.09001 * 117.54168 * 145.82269 * 17 16 15 37 37 H 1.08996 * 109.35294 * 261.26008 * 20 18 16 38 38 H 1.08998 * 109.35505 * 141.68591 * 20 18 16 39 39 H 1.09005 * 109.61922 * 185.74609 * 21 20 18 40 40 H 1.09004 * 109.62126 * 65.20911 * 21 20 18 41 41 H 1.09007 * 109.61709 * 194.17722 * 22 21 20 42 42 H 1.08998 * 109.61659 * 314.53425 * 22 21 20 43 43 H 1.09008 * 109.26514 * 46.57734 * 23 16 15 44 44 H 1.08996 * 109.27024 * 287.11287 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7203 1.9409 -0.9151 5 6 3.5453 1.4431 0.0729 6 1 4.0457 1.9247 0.8999 7 6 4.2836 0.8288 -0.9164 8 7 3.6740 0.2419 -1.9233 9 14 6.1494 0.8301 -0.8265 10 1 6.6099 -0.3697 -0.0826 11 1 6.7112 0.8062 -2.2009 12 1 6.6102 2.0548 -0.1245 13 7 1.4932 2.1551 1.1624 14 6 1.8604 1.4799 2.4143 15 6 1.9298 3.5577 1.1732 16 6 1.1166 4.3528 0.1496 17 6 1.5809 4.2205 -1.2948 18 6 1.8367 5.5175 -0.5118 19 1 2.8611 5.7151 -0.1963 20 6 1.0588 6.7463 -0.9780 21 6 -0.2737 6.8393 -0.2346 22 6 -1.0284 5.5176 -0.4172 23 6 -0.3685 4.4542 0.4608 24 1 -0.3634 -1.0245 0.0802 25 1 -0.3633 0.5817 0.8472 26 1 -0.3633 0.4429 -0.9274 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 4.1935 -0.1899 -2.6194 30 1 1.4447 2.0296 3.2590 31 1 1.4626 0.4652 2.4100 32 1 2.9462 1.4443 2.5030 33 1 2.9879 3.6109 0.9168 34 1 1.7750 3.9789 2.1664 35 1 2.4360 3.5740 -1.4921 36 1 0.8184 4.2439 -2.0734 37 1 0.8706 6.6698 -2.0488 38 1 1.6466 7.6425 -0.7797 39 1 -0.8651 7.6581 -0.6445 40 1 -0.0899 7.0124 0.8258 41 1 -2.0686 5.6456 -0.1176 42 1 -0.9837 5.2121 -1.4626 43 1 -0.4988 4.7221 1.5094 44 1 -0.8417 3.4901 0.2750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710413586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:28 Heat of formation + Delta-G solvation = 7.267180 kcal Electronic energy + Delta-G solvation = -20255.914019 eV Core-core repulsion = 17594.040755 eV Total energy + Delta-G solvation = -2661.873265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53415 -36.82604 -33.15054 -32.36667 -31.12960 -30.30964 -26.90742 -26.31393 -24.28300 -23.75324 -22.14482 -21.27110 -20.05546 -18.82344 -17.67842 -16.40307 -15.39497 -14.81745 -14.22814 -14.00181 -13.85071 -13.53897 -13.48504 -13.00105 -12.86055 -12.59138 -11.89406 -11.75986 -11.70266 -11.31656 -11.25133 -11.02304 -10.88731 -10.82580 -10.61162 -10.48351 -10.45671 -10.33831 -9.99377 -9.75564 -9.72215 -9.46282 -9.08760 -8.84836 -8.78461 -8.27800 -7.00691 -5.95002 -4.07322 3.26814 3.34526 3.36938 4.29688 4.41415 5.00852 5.14079 5.15678 5.26398 5.31586 5.60454 5.63290 5.67844 5.71341 5.86596 5.98258 5.99918 6.12153 6.24861 6.30750 6.34664 6.40700 6.42579 6.50717 6.52448 6.55034 6.62990 6.71569 6.74283 6.79032 6.80577 6.85070 6.95574 7.09236 7.16099 7.28492 7.42071 7.70035 7.81405 8.07098 8.25039 8.41321 8.54652 9.03951 9.59117 11.03548 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.007919 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.778366 B = 3535.033944 C = 4138.596547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.208 3.792 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.533 5.533 14 C 0.032 3.968 15 C 0.090 3.910 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.161 4.161 19 H 0.094 0.906 20 C -0.084 4.084 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.067 4.067 24 H 0.022 0.978 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 8.594 3.163 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.102 3.898 4 H 0.072 0.928 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.257 5.257 14 C -0.116 4.116 15 C -0.039 4.039 16 C -0.085 4.085 17 C -0.201 4.201 18 C -0.180 4.180 19 H 0.112 0.888 20 C -0.122 4.122 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.104 4.104 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.143 8.473 2.952 11.469 hybrid contribution 2.166 -0.161 0.040 2.172 sum -4.977 8.312 2.992 10.140 Atomic orbital electron populations 1.21733 0.98949 0.98241 1.00748 1.21625 0.92023 0.99579 1.01839 1.19436 0.91256 0.90329 0.88808 0.92820 1.21718 0.92858 1.35440 1.07820 0.92898 1.24872 0.97814 0.95231 0.95379 1.69885 1.34891 1.36308 1.11211 0.86759 0.86695 0.78296 0.77224 1.20831 1.21251 1.20180 1.62415 1.58862 1.00889 1.03501 1.22196 0.98813 0.98876 0.91757 1.21556 0.97057 0.89462 0.95793 1.20839 0.94618 0.98098 0.94986 1.23264 1.03764 0.99025 0.94052 1.22281 0.99623 0.89869 1.06185 0.88829 1.20998 0.95495 0.96388 0.99289 1.21539 0.96164 0.97128 1.00532 1.21635 0.98336 0.95481 1.00534 1.20618 0.92788 0.98612 0.98413 0.95898 0.92928 0.94404 0.89469 0.94989 0.93017 0.94455 0.92182 0.95508 0.93292 0.93434 0.87043 0.90045 0.92245 0.92487 0.92815 0.92024 0.92585 0.92117 0.92565 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.76 37.16 0.36 -2.46 16 2 C -0.11 -2.64 4.69 -26.73 -0.13 -2.77 16 3 C 0.21 4.93 1.44 -68.86 -0.10 4.83 16 4 H 0.05 1.39 5.26 -51.93 -0.27 1.11 16 5 C -0.54 -14.05 6.70 -34.44 -0.23 -14.28 16 6 H 0.05 1.41 5.98 -52.49 -0.31 1.10 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.47 11.35 55.43 0.63 -23.84 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.53 -10.98 3.62 -236.28 -0.86 -11.84 16 14 C 0.03 0.63 8.73 60.07 0.52 1.16 16 15 C 0.09 1.73 4.58 -3.82 -0.02 1.72 16 16 C -0.08 -1.47 2.08 -155.81 -0.32 -1.79 16 17 C -0.16 -3.04 7.65 -26.75 -0.20 -3.25 16 18 C -0.16 -2.59 5.77 -90.90 -0.52 -3.11 16 19 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 20 C -0.08 -1.12 5.83 -26.94 -0.16 -1.28 16 21 C -0.12 -1.42 5.93 -26.64 -0.16 -1.58 16 22 C -0.12 -1.61 5.70 -26.64 -0.15 -1.76 16 23 C -0.07 -1.03 5.38 -27.27 -0.15 -1.18 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.03 7.30 -51.93 -0.38 0.65 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 28 H 0.03 0.75 6.54 -51.93 -0.34 0.41 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 31 H 0.06 1.17 6.30 -51.93 -0.33 0.84 16 32 H 0.03 0.56 6.60 -51.93 -0.34 0.22 16 33 H 0.05 1.07 6.12 -51.93 -0.32 0.75 16 34 H 0.05 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.11 2.48 6.78 -51.93 -0.35 2.13 16 36 H 0.08 1.44 7.27 -51.93 -0.38 1.07 16 37 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.83 7.12 -51.93 -0.37 0.46 16 43 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -26.14 322.09 -9.62 -35.76 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.88 Total: 3.01 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -1.35 Total: -23.99 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.23 Total: -35.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.14 -9.62 -35.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710413586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.031 kcal (2) G-P(sol) polarization free energy of solvation -26.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds