Wall clock time and date at job start Mon Mar 30 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47176 * 2 1 4 4 H 1.08999 * 109.47438 * 297.06213 * 3 2 1 5 5 C 1.50707 * 109.47002 * 177.06096 * 3 2 1 6 6 H 1.07995 * 120.00115 * 240.00065 * 5 3 2 7 7 C 1.37878 * 119.99891 * 60.00394 * 5 3 2 8 8 N 1.31519 * 119.99546 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46901 * 89.99561 * 9 7 5 11 11 H 1.48496 * 109.47285 * 209.99714 * 9 7 5 12 12 H 1.48502 * 109.46831 * 330.00188 * 9 7 5 13 13 N 1.46896 * 109.46957 * 57.06430 * 3 2 1 14 14 C 1.46904 * 111.00159 * 57.76652 * 13 3 2 15 15 C 1.46900 * 111.00176 * 181.71761 * 13 3 2 16 16 C 1.53004 * 109.46921 * 76.94052 * 15 13 3 17 17 C 1.52296 * 115.29503 * 279.57208 * 16 15 13 18 18 C 1.52069 * 115.93138 * 211.48631 * 16 15 13 19 19 H 1.09001 * 117.25632 * 358.62239 * 18 16 15 20 20 C 1.52716 * 120.52153 * 209.99684 * 18 16 15 21 21 C 1.52868 * 110.15198 * 21.47185 * 20 18 16 22 22 C 1.53298 * 108.58378 * 305.47729 * 21 20 18 23 23 C 1.52076 * 114.63508 * 64.87046 * 16 15 13 24 24 H 1.09002 * 109.47430 * 184.47422 * 1 2 3 25 25 H 1.09000 * 109.47182 * 304.47509 * 1 2 3 26 26 H 1.09002 * 109.46784 * 64.47127 * 1 2 3 27 27 H 1.09003 * 109.47103 * 239.99912 * 2 1 3 28 28 H 1.09001 * 109.46760 * 119.99771 * 2 1 3 29 29 H 0.97000 * 119.99379 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46919 * 179.87715 * 14 13 3 31 31 H 1.08997 * 109.46968 * 299.87399 * 14 13 3 32 32 H 1.08999 * 109.47125 * 59.87897 * 14 13 3 33 33 H 1.09004 * 109.47241 * 316.94632 * 15 13 3 34 34 H 1.08993 * 109.47641 * 196.94378 * 15 13 3 35 35 H 1.09002 * 117.54050 * 0.57191 * 17 16 15 36 36 H 1.09001 * 117.54168 * 145.82269 * 17 16 15 37 37 H 1.08996 * 109.35294 * 261.26008 * 20 18 16 38 38 H 1.08998 * 109.35505 * 141.68591 * 20 18 16 39 39 H 1.09005 * 109.61922 * 185.74609 * 21 20 18 40 40 H 1.09004 * 109.62126 * 65.20911 * 21 20 18 41 41 H 1.09007 * 109.61709 * 194.17722 * 22 21 20 42 42 H 1.08998 * 109.61659 * 314.53425 * 22 21 20 43 43 H 1.09008 * 109.26514 * 46.57734 * 23 16 15 44 44 H 1.08996 * 109.27024 * 287.11287 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7203 1.9409 -0.9151 5 6 3.5453 1.4431 0.0729 6 1 4.0457 1.9247 0.8999 7 6 4.2836 0.8288 -0.9164 8 7 3.6740 0.2419 -1.9233 9 14 6.1494 0.8301 -0.8265 10 1 6.6099 -0.3697 -0.0826 11 1 6.7112 0.8062 -2.2009 12 1 6.6102 2.0548 -0.1245 13 7 1.4932 2.1551 1.1624 14 6 1.8604 1.4799 2.4143 15 6 1.9298 3.5577 1.1732 16 6 1.1166 4.3528 0.1496 17 6 1.5809 4.2205 -1.2948 18 6 1.8367 5.5175 -0.5118 19 1 2.8611 5.7151 -0.1963 20 6 1.0588 6.7463 -0.9780 21 6 -0.2737 6.8393 -0.2346 22 6 -1.0284 5.5176 -0.4172 23 6 -0.3685 4.4542 0.4608 24 1 -0.3634 -1.0245 0.0802 25 1 -0.3633 0.5817 0.8472 26 1 -0.3633 0.4429 -0.9274 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 4.1935 -0.1899 -2.6194 30 1 1.4447 2.0296 3.2590 31 1 1.4626 0.4652 2.4100 32 1 2.9462 1.4443 2.5030 33 1 2.9879 3.6109 0.9168 34 1 1.7750 3.9789 2.1664 35 1 2.4360 3.5740 -1.4921 36 1 0.8184 4.2439 -2.0734 37 1 0.8706 6.6698 -2.0488 38 1 1.6466 7.6425 -0.7797 39 1 -0.8651 7.6581 -0.6445 40 1 -0.0899 7.0124 0.8258 41 1 -2.0686 5.6456 -0.1176 42 1 -0.9837 5.2121 -1.4626 43 1 -0.4988 4.7221 1.5094 44 1 -0.8417 3.4901 0.2750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710413586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:28 Heat of formation + Delta-G solvation = -4.907697 kcal Electronic energy + Delta-G solvation = -20256.441962 eV Core-core repulsion = 17594.040755 eV Total energy + Delta-G solvation = -2662.401207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90708 -38.50234 -34.77190 -33.95839 -32.86339 -31.55482 -28.82623 -27.84073 -25.87746 -25.25562 -23.78379 -22.52512 -21.44327 -20.68984 -18.97098 -18.34487 -17.08314 -16.38469 -16.01083 -15.59842 -15.18727 -14.92420 -14.73102 -14.65558 -14.22611 -14.20302 -13.49828 -13.40017 -13.13865 -12.93786 -12.84424 -12.69770 -12.61982 -12.40835 -12.26939 -12.11838 -11.70917 -11.66087 -11.63045 -11.56058 -11.24709 -10.98242 -10.90707 -10.51369 -10.20289 -10.16087 -8.82404 -7.98874 -6.19561 1.32883 1.35774 1.42936 2.39602 2.89076 3.18561 3.62307 3.89062 3.98082 4.04131 4.23618 4.32170 4.45744 4.49997 4.59364 4.69032 4.73448 4.77189 4.82433 4.84155 4.92577 4.95482 4.97817 5.09888 5.14400 5.18083 5.19365 5.22632 5.33416 5.36039 5.45783 5.46911 5.49400 5.53051 5.56212 5.63186 5.68961 5.70372 5.89416 6.13256 6.29727 6.45564 6.77033 7.03734 7.49489 8.94650 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.007919 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.778366 B = 3535.033944 C = 4138.596547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.218 3.782 4 H 0.031 0.969 5 C -0.542 4.542 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.935 3.065 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.034 3.966 15 C 0.091 3.909 16 C -0.083 4.083 17 C -0.181 4.181 18 C -0.141 4.141 19 H 0.084 0.916 20 C -0.083 4.083 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.063 4.063 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.017 0.983 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 10.241 4.269 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.110 3.890 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.548 5.548 9 Si 0.763 3.237 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.250 5.250 14 C -0.114 4.114 15 C -0.038 4.038 16 C -0.083 4.083 17 C -0.218 4.218 18 C -0.160 4.160 19 H 0.103 0.897 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.100 4.100 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.448 10.125 4.070 13.801 hybrid contribution 2.599 -0.673 -0.277 2.699 sum -5.850 9.453 3.793 11.746 Atomic orbital electron populations 1.21579 0.96166 0.99659 1.00887 1.21486 0.94449 0.98831 0.99930 1.19169 0.89960 0.90597 0.89226 0.95165 1.21932 0.94402 1.34601 1.07172 0.94000 1.25491 1.01352 0.95350 0.95351 1.70004 1.35972 1.37115 1.11713 0.85911 0.82573 0.78138 0.77122 1.20484 1.21013 1.20148 1.62391 1.58191 1.01381 1.02997 1.22231 0.97651 0.99393 0.92147 1.21585 0.95600 0.89109 0.97493 1.20891 0.95960 0.98326 0.93171 1.22999 1.02652 1.00732 0.95383 1.22376 0.99609 0.90200 1.03785 0.89733 1.21045 0.96207 0.95205 0.99562 1.21527 0.95329 0.97228 1.00755 1.21621 0.99464 0.95151 0.99433 1.20594 0.90935 0.98809 0.99660 0.93948 0.91955 0.94851 0.92575 0.95582 0.93193 0.91331 0.92209 0.97565 0.96495 0.91411 0.91657 0.89594 0.92003 0.90685 0.90360 0.91577 0.90464 0.93025 0.91399 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.76 71.98 0.70 -4.29 16 2 C -0.11 -5.19 4.69 30.59 0.14 -5.05 16 3 C 0.22 10.61 1.44 44.17 0.06 10.67 16 4 H 0.03 1.64 5.26 -2.39 -0.01 1.63 16 5 C -0.54 -29.20 6.70 25.60 0.17 -29.03 16 6 H 0.04 2.31 5.98 -2.91 -0.02 2.29 16 7 C 0.02 1.34 5.30 84.65 0.45 1.78 16 8 N -0.91 -52.01 11.35 21.45 0.24 -51.77 16 9 Si 0.94 44.26 29.54 68.60 2.03 46.28 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.53 -21.66 3.62 -901.44 -3.26 -24.93 16 14 C 0.03 1.31 8.73 127.69 1.11 2.43 16 15 C 0.09 3.49 4.58 86.30 0.40 3.88 16 16 C -0.08 -2.83 2.08 -53.03 -0.11 -2.94 16 17 C -0.18 -6.90 7.65 30.58 0.23 -6.66 16 18 C -0.14 -4.44 5.77 -10.98 -0.06 -4.50 16 19 H 0.08 2.80 8.13 -2.39 -0.02 2.78 16 20 C -0.08 -1.98 5.83 30.46 0.18 -1.81 16 21 C -0.11 -2.30 5.93 30.65 0.18 -2.12 16 22 C -0.12 -2.79 5.70 30.65 0.17 -2.62 16 23 C -0.06 -1.81 5.38 30.25 0.16 -1.64 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 2.34 7.30 -2.39 -0.02 2.33 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 3.05 6.15 -2.39 -0.01 3.03 16 28 H 0.03 1.24 6.54 -2.39 -0.02 1.22 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.07 2.19 7.97 -2.38 -0.02 2.17 16 31 H 0.06 2.27 6.30 -2.39 -0.02 2.26 16 32 H 0.01 0.24 6.60 -2.39 -0.02 0.23 16 33 H 0.02 0.76 6.12 -2.38 -0.01 0.74 16 34 H 0.07 2.32 7.80 -2.39 -0.02 2.30 16 35 H 0.06 3.11 6.78 -2.39 -0.02 3.10 16 36 H 0.09 3.13 7.27 -2.39 -0.02 3.12 16 37 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 1.35 8.04 -2.38 -0.02 1.33 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 1.31 7.12 -2.39 -0.02 1.29 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -57.72 322.09 3.75 -53.97 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.95 Total: 18.32 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 3.80 Total: -41.88 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.02 Total: -76.69 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -57.72 3.75 -53.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710413586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.065 kcal (2) G-P(sol) polarization free energy of solvation -57.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds