Wall clock time and date at job start Mon Mar 30 2020 07:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.09002 * 109.47037 * 306.05944 * 3 2 1 5 5 C 1.50700 * 109.47533 * 186.05673 * 3 2 1 6 6 H 1.07998 * 119.99839 * 245.26043 * 5 3 2 7 7 C 1.37875 * 120.00028 * 65.25250 * 5 3 2 8 8 N 1.31511 * 120.00396 * 194.12726 * 7 5 3 9 9 Si 1.86806 * 119.99686 * 14.13272 * 7 5 3 10 10 H 1.48498 * 109.46968 * 87.95379 * 9 7 5 11 11 H 1.48505 * 109.46788 * 207.95159 * 9 7 5 12 12 H 1.48498 * 109.47014 * 327.94777 * 9 7 5 13 13 N 1.46910 * 109.46879 * 66.05504 * 3 2 1 14 14 C 1.46896 * 111.00181 * 258.87525 * 13 3 2 15 15 H 1.09006 * 110.74037 * 43.22722 * 14 13 3 16 16 C 1.55527 * 110.83272 * 279.80000 * 14 13 3 17 17 C 1.54991 * 102.29313 * 201.14738 * 16 14 13 18 18 C 1.55468 * 104.47863 * 36.85843 * 17 16 14 19 19 H 1.09001 * 109.12544 * 98.75969 * 18 17 16 20 20 C 1.51620 * 107.47431 * 217.06420 * 18 17 16 21 21 C 1.52223 * 112.87127 * 152.16955 * 20 18 17 22 22 C 1.53464 * 108.03084 * 301.34083 * 21 20 18 23 23 C 1.52559 * 107.52858 * 68.75690 * 22 21 20 24 24 C 1.47908 * 112.79328 * 305.20594 * 23 22 21 25 25 H 1.09004 * 103.67161 * 148.67619 * 24 23 22 26 26 H 1.09005 * 109.46813 * 176.40794 * 1 2 3 27 27 H 1.09000 * 109.47102 * 56.40820 * 1 2 3 28 28 H 1.08996 * 109.47117 * 296.41020 * 1 2 3 29 29 H 1.09005 * 109.47457 * 120.00162 * 2 1 3 30 30 H 1.08998 * 109.47264 * 240.00016 * 2 1 3 31 31 H 0.96995 * 120.00359 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99535 * 22.82931 * 13 3 2 33 33 H 1.09006 * 110.83662 * 319.34909 * 16 14 13 34 34 H 1.08999 * 110.84017 * 82.94297 * 16 14 13 35 35 H 1.08993 * 110.43115 * 155.61186 * 17 16 14 36 36 H 1.09004 * 110.43121 * 278.10984 * 17 16 14 37 37 H 1.08996 * 108.80552 * 273.04551 * 20 18 17 38 38 H 1.08996 * 108.80509 * 31.40778 * 20 18 17 39 39 H 1.09008 * 109.74636 * 60.97327 * 21 20 18 40 40 H 1.09001 * 109.75484 * 181.65160 * 21 20 18 41 41 H 1.08998 * 109.84952 * 188.26596 * 22 21 20 42 42 H 1.09006 * 109.84131 * 309.18652 * 22 21 20 43 43 H 1.09001 * 108.72599 * 66.61735 * 23 22 21 44 44 H 1.09004 * 108.72323 * 184.78640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5908 1.9867 -0.8308 5 6 3.5396 1.4452 -0.1499 6 1 4.1620 1.8074 0.6549 7 6 4.1168 0.9850 -1.3144 8 7 5.4052 0.7242 -1.3513 9 14 3.0686 0.7321 -2.8398 10 1 3.0061 1.9984 -3.6129 11 1 3.6695 -0.3331 -3.6823 12 1 1.6971 0.3297 -2.4369 13 7 1.6733 2.0915 1.2659 14 6 0.4993 2.9573 1.0928 15 1 -0.2573 2.4644 0.4821 16 6 0.9066 4.3240 0.4721 17 6 -0.2785 5.2369 0.8776 18 6 -0.6695 4.7559 2.3034 19 1 -0.2201 5.4213 3.0405 20 6 -2.1795 4.8373 2.4131 21 6 -2.7561 3.8313 3.3994 22 6 -2.3486 2.4258 2.9372 23 6 -0.8411 2.2968 3.1328 24 6 -0.0815 3.3699 2.4553 25 1 0.7929 3.5077 3.0915 26 1 -0.3633 -1.0257 -0.0644 27 1 -0.3633 0.5686 -0.8560 28 1 -0.3633 0.4571 0.9204 29 1 1.8934 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 5.8114 0.4009 -2.1706 32 1 1.5143 1.4073 1.9902 33 1 1.8396 4.6841 0.9058 34 1 0.9852 4.2493 -0.6124 35 1 0.0357 6.2803 0.9008 36 1 -1.1133 5.1050 0.1892 37 1 -2.4549 5.8417 2.7345 38 1 -2.6137 4.6520 1.4306 39 1 -2.3566 4.0217 4.3956 40 1 -3.8429 3.9136 3.4166 41 1 -2.8650 1.6752 3.5355 42 1 -2.5986 2.2956 1.8842 43 1 -0.6236 2.3202 4.2007 44 1 -0.5171 1.3366 2.7314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714286580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:59 Heat of formation + Delta-G solvation = -26.589352 kcal Electronic energy + Delta-G solvation = -20056.511909 eV Core-core repulsion = 17393.170515 eV Total energy + Delta-G solvation = -2663.341394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92526 -36.49063 -34.34372 -32.48817 -31.69817 -30.05601 -28.33834 -27.30161 -24.91905 -22.57923 -22.39578 -21.32840 -20.41579 -19.55682 -18.00513 -16.60784 -16.07507 -15.15501 -14.70496 -14.56128 -14.13403 -13.81261 -13.73075 -13.32887 -13.05176 -12.75969 -12.51276 -12.15512 -11.89290 -11.72844 -11.63425 -11.31582 -11.05924 -10.99012 -10.78557 -10.71161 -10.43637 -10.32942 -10.26530 -10.04765 -9.87272 -9.79088 -9.67164 -9.29672 -9.18838 -8.34031 -7.26694 -6.00741 -3.92369 3.30680 3.39423 3.41830 4.47630 4.59530 4.69470 4.76425 5.04669 5.10794 5.19654 5.26416 5.33301 5.47383 5.55076 5.57825 5.71999 5.77413 5.78430 5.86797 5.87526 5.95882 5.99096 6.03293 6.08381 6.11959 6.14029 6.17492 6.28324 6.37763 6.42715 6.53975 6.59254 6.60559 6.66706 6.75052 6.79706 6.84710 7.01807 7.24640 7.83825 8.05755 8.44529 8.79596 9.16444 9.66169 11.13003 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.006417 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.058223 B = 4362.504929 C = 4658.890135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.152 4.152 3 C 0.194 3.806 4 H 0.023 0.977 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.857 3.143 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.254 1.254 13 N -0.664 5.664 14 C 0.089 3.911 15 H 0.039 0.961 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.071 4.071 19 H 0.065 0.935 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.090 4.090 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 5.390 7.094 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C 0.086 3.914 4 H 0.041 0.959 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.178 1.178 13 N -0.295 5.295 14 C -0.022 4.022 15 H 0.057 0.943 16 C -0.150 4.150 17 C -0.161 4.161 18 C -0.090 4.090 19 H 0.084 0.916 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.109 4.109 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.680 5.842 6.909 18.103 hybrid contribution -1.048 -0.876 -1.107 1.758 sum -16.728 4.966 5.803 18.389 Atomic orbital electron populations 1.21983 0.98586 1.00061 1.00618 1.22652 0.92726 1.01840 1.01955 1.19545 0.96594 0.88009 0.87300 0.95915 1.21005 0.89282 1.40871 1.02117 0.90271 1.24898 0.94669 0.94973 0.98537 1.69955 1.11114 1.45162 1.27425 0.87349 0.82104 0.77960 0.84191 1.20715 1.21618 1.17842 1.60709 1.34070 1.25321 1.09355 1.22418 0.91346 0.94238 0.94196 0.94309 1.22586 0.97777 0.94496 1.00178 1.22830 0.98585 0.99077 0.95583 1.20916 0.94748 0.95818 0.97499 0.91638 1.21251 0.95422 0.98642 0.99547 1.21459 0.99537 0.95383 0.99092 1.21544 0.96273 0.96544 1.01194 1.20429 0.94881 0.98771 1.00052 1.20060 0.98992 0.93958 0.97926 0.91962 0.94127 0.93739 0.93367 0.92547 0.91988 0.92888 0.85649 0.90414 0.92153 0.92206 0.92058 0.92742 0.92305 0.92113 0.92454 0.92409 0.91993 0.92443 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.70 37.16 0.32 -2.39 16 2 C -0.15 -3.24 4.53 -26.73 -0.12 -3.36 16 3 C 0.19 4.49 1.58 -68.86 -0.11 4.38 16 4 H 0.02 0.55 6.07 -51.93 -0.31 0.24 16 5 C -0.49 -13.90 9.28 -34.44 -0.32 -14.22 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.07 2.03 5.34 -17.82 -0.10 1.93 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.86 21.27 25.81 -169.99 -4.39 16.88 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.25 -5.90 5.43 56.52 0.31 -5.59 16 13 N -0.66 -13.28 5.82 -99.13 -0.58 -13.86 16 14 C 0.09 1.49 1.67 -65.98 -0.11 1.38 16 15 H 0.04 0.68 6.26 -51.93 -0.33 0.35 16 16 C -0.11 -1.88 6.29 -24.34 -0.15 -2.03 16 17 C -0.12 -1.62 6.30 -24.37 -0.15 -1.77 16 18 C -0.07 -0.88 3.14 -90.86 -0.29 -1.16 16 19 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.11 -1.18 5.24 -27.83 -0.15 -1.32 16 21 C -0.12 -1.16 5.97 -26.89 -0.16 -1.32 16 22 C -0.12 -1.28 6.05 -26.72 -0.16 -1.44 16 23 C -0.10 -1.29 5.24 -29.42 -0.15 -1.44 16 24 C -0.09 -1.26 1.95 -93.54 -0.18 -1.44 16 25 H 0.06 0.95 7.81 -51.93 -0.41 0.55 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.05 0.77 5.26 -51.93 -0.27 0.49 16 29 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 30 H 0.06 1.42 4.86 -51.93 -0.25 1.17 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.33 6.14 7.07 -39.29 -0.28 5.86 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 7.22 -51.93 -0.37 0.39 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 7.19 -51.93 -0.37 0.26 16 39 H 0.06 0.59 8.10 -51.92 -0.42 0.17 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.83 5.65 -51.93 -0.29 0.53 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -29.19 315.72 -9.28 -38.47 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.02 Total: 4.81 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.83 Total: -24.20 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.20 Total: -40.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.39 Total: 16.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.19 -9.28 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.877 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds