Wall clock time and date at job start Mon Mar 30 2020 07:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.09002 * 109.47037 * 306.05944 * 3 2 1 5 5 C 1.50700 * 109.47533 * 186.05673 * 3 2 1 6 6 H 1.07998 * 119.99839 * 245.26043 * 5 3 2 7 7 C 1.37875 * 120.00028 * 65.25250 * 5 3 2 8 8 N 1.31511 * 120.00396 * 194.12726 * 7 5 3 9 9 Si 1.86806 * 119.99686 * 14.13272 * 7 5 3 10 10 H 1.48498 * 109.46968 * 87.95379 * 9 7 5 11 11 H 1.48505 * 109.46788 * 207.95159 * 9 7 5 12 12 H 1.48498 * 109.47014 * 327.94777 * 9 7 5 13 13 N 1.46910 * 109.46879 * 66.05504 * 3 2 1 14 14 C 1.46896 * 111.00181 * 258.87525 * 13 3 2 15 15 H 1.09006 * 110.74037 * 43.22722 * 14 13 3 16 16 C 1.55527 * 110.83272 * 279.80000 * 14 13 3 17 17 C 1.54991 * 102.29313 * 201.14738 * 16 14 13 18 18 C 1.55468 * 104.47863 * 36.85843 * 17 16 14 19 19 H 1.09001 * 109.12544 * 98.75969 * 18 17 16 20 20 C 1.51620 * 107.47431 * 217.06420 * 18 17 16 21 21 C 1.52223 * 112.87127 * 152.16955 * 20 18 17 22 22 C 1.53464 * 108.03084 * 301.34083 * 21 20 18 23 23 C 1.52559 * 107.52858 * 68.75690 * 22 21 20 24 24 C 1.47908 * 112.79328 * 305.20594 * 23 22 21 25 25 H 1.09004 * 103.67161 * 148.67619 * 24 23 22 26 26 H 1.09005 * 109.46813 * 176.40794 * 1 2 3 27 27 H 1.09000 * 109.47102 * 56.40820 * 1 2 3 28 28 H 1.08996 * 109.47117 * 296.41020 * 1 2 3 29 29 H 1.09005 * 109.47457 * 120.00162 * 2 1 3 30 30 H 1.08998 * 109.47264 * 240.00016 * 2 1 3 31 31 H 0.96995 * 120.00359 * 180.02562 * 8 7 5 32 32 H 1.00901 * 110.99535 * 22.82931 * 13 3 2 33 33 H 1.09006 * 110.83662 * 319.34909 * 16 14 13 34 34 H 1.08999 * 110.84017 * 82.94297 * 16 14 13 35 35 H 1.08993 * 110.43115 * 155.61186 * 17 16 14 36 36 H 1.09004 * 110.43121 * 278.10984 * 17 16 14 37 37 H 1.08996 * 108.80552 * 273.04551 * 20 18 17 38 38 H 1.08996 * 108.80509 * 31.40778 * 20 18 17 39 39 H 1.09008 * 109.74636 * 60.97327 * 21 20 18 40 40 H 1.09001 * 109.75484 * 181.65160 * 21 20 18 41 41 H 1.08998 * 109.84952 * 188.26596 * 22 21 20 42 42 H 1.09006 * 109.84131 * 309.18652 * 22 21 20 43 43 H 1.09001 * 108.72599 * 66.61735 * 23 22 21 44 44 H 1.09004 * 108.72323 * 184.78640 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5908 1.9867 -0.8308 5 6 3.5396 1.4452 -0.1499 6 1 4.1620 1.8074 0.6549 7 6 4.1168 0.9850 -1.3144 8 7 5.4052 0.7242 -1.3513 9 14 3.0686 0.7321 -2.8398 10 1 3.0061 1.9984 -3.6129 11 1 3.6695 -0.3331 -3.6823 12 1 1.6971 0.3297 -2.4369 13 7 1.6733 2.0915 1.2659 14 6 0.4993 2.9573 1.0928 15 1 -0.2573 2.4644 0.4821 16 6 0.9066 4.3240 0.4721 17 6 -0.2785 5.2369 0.8776 18 6 -0.6695 4.7559 2.3034 19 1 -0.2201 5.4213 3.0405 20 6 -2.1795 4.8373 2.4131 21 6 -2.7561 3.8313 3.3994 22 6 -2.3486 2.4258 2.9372 23 6 -0.8411 2.2968 3.1328 24 6 -0.0815 3.3699 2.4553 25 1 0.7929 3.5077 3.0915 26 1 -0.3633 -1.0257 -0.0644 27 1 -0.3633 0.5686 -0.8560 28 1 -0.3633 0.4571 0.9204 29 1 1.8934 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 5.8114 0.4009 -2.1706 32 1 1.5143 1.4073 1.9902 33 1 1.8396 4.6841 0.9058 34 1 0.9852 4.2493 -0.6124 35 1 0.0357 6.2803 0.9008 36 1 -1.1133 5.1050 0.1892 37 1 -2.4549 5.8417 2.7345 38 1 -2.6137 4.6520 1.4306 39 1 -2.3566 4.0217 4.3956 40 1 -3.8429 3.9136 3.4166 41 1 -2.8650 1.6752 3.5355 42 1 -2.5986 2.2956 1.8842 43 1 -0.6236 2.3202 4.2007 44 1 -0.5171 1.3366 2.7314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714286580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:59 Heat of formation + Delta-G solvation = -44.011149 kcal Electronic energy + Delta-G solvation = -20057.267375 eV Core-core repulsion = 17393.170515 eV Total energy + Delta-G solvation = -2664.096860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06028 -38.04286 -35.51972 -34.32009 -33.15770 -31.39879 -29.44798 -29.07501 -26.27787 -24.26570 -23.40472 -22.33620 -21.92659 -21.07545 -19.27640 -18.49638 -17.36508 -16.52301 -16.45645 -15.77126 -15.40039 -15.20454 -14.88223 -14.76052 -14.49518 -14.08824 -13.89160 -13.58476 -13.39957 -13.09241 -12.76594 -12.67275 -12.56665 -12.36391 -12.18441 -12.02541 -11.93394 -11.72947 -11.56233 -11.40704 -11.28131 -11.21856 -10.99807 -10.74781 -10.66668 -10.48896 -8.90883 -8.25986 -6.22206 1.31767 1.35187 1.43757 2.35863 3.07232 3.40816 3.60768 3.74056 3.91454 4.18970 4.19948 4.28658 4.30518 4.37346 4.47013 4.49110 4.50921 4.58636 4.63557 4.72576 4.82844 4.83870 4.92405 4.98327 5.03263 5.09086 5.11548 5.14314 5.17881 5.23338 5.27370 5.32242 5.34913 5.44338 5.51394 5.52467 5.57386 5.66341 5.72197 5.76506 6.15167 6.79361 6.83353 6.87501 7.41070 8.91781 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.006417 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.058223 B = 4362.504929 C = 4658.890135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.018 0.982 5 C -0.500 4.500 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.923 3.077 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.225 1.225 13 N -0.677 5.677 14 C 0.088 3.912 15 H 0.042 0.958 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.069 4.069 19 H 0.069 0.931 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.077 4.077 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.331 0.669 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.078 5.600 7.264 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C 0.094 3.906 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.148 1.148 13 N -0.308 5.308 14 C -0.022 4.022 15 H 0.060 0.940 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.088 4.088 19 H 0.088 0.912 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.097 4.097 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.467 6.060 7.101 21.590 hybrid contribution 0.240 -0.896 -1.057 1.406 sum -19.227 5.164 6.044 20.806 Atomic orbital electron populations 1.21878 0.95074 1.01828 1.01491 1.22500 0.95804 0.99626 1.01063 1.19278 0.93136 0.89689 0.88530 0.96436 1.21306 0.91929 1.39895 1.00743 0.95243 1.25732 0.95853 0.94855 1.01914 1.70110 1.13370 1.47070 1.28409 0.86276 0.81655 0.77827 0.79541 1.20573 1.21456 1.14809 1.60530 1.36500 1.25580 1.08206 1.22478 0.90166 0.93347 0.96238 0.94005 1.22597 0.98512 0.95736 0.98966 1.22794 0.97134 0.98852 0.96307 1.20914 0.96479 0.94485 0.96921 0.91224 1.21222 0.93492 0.99880 1.00007 1.21460 1.00584 0.94292 0.98874 1.21535 0.94760 0.97760 1.01228 1.20421 0.96161 0.97406 1.00190 1.20026 0.98692 0.95402 0.95533 0.94000 0.91810 0.93629 0.91875 0.92887 0.93573 0.92840 0.85002 0.92845 0.93804 0.91004 0.90815 0.91202 0.92205 0.91838 0.90739 0.91064 0.92482 0.91646 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 8.70 71.98 0.63 -4.02 16 2 C -0.15 -6.22 4.53 30.59 0.14 -6.08 16 3 C 0.20 9.44 1.58 44.17 0.07 9.51 16 4 H 0.02 0.85 6.07 -2.39 -0.01 0.83 16 5 C -0.50 -29.27 9.28 25.60 0.24 -29.04 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.78 5.34 84.65 0.45 1.23 16 8 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 9 Si 0.92 44.40 25.81 68.60 1.77 46.17 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.23 -9.71 5.43 99.48 0.54 -9.17 16 13 N -0.68 -27.41 5.82 -467.55 -2.72 -30.14 16 14 C 0.09 2.88 1.67 46.04 0.08 2.96 16 15 H 0.04 1.38 6.26 -2.38 -0.01 1.36 16 16 C -0.12 -4.01 6.29 32.15 0.20 -3.81 16 17 C -0.11 -2.76 6.30 32.12 0.20 -2.56 16 18 C -0.07 -1.54 3.14 -10.95 -0.03 -1.58 16 19 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 20 C -0.11 -1.90 5.24 29.88 0.16 -1.74 16 21 C -0.11 -1.82 5.97 30.49 0.18 -1.64 16 22 C -0.12 -2.10 6.05 30.60 0.19 -1.92 16 23 C -0.10 -2.34 5.24 28.85 0.15 -2.19 16 24 C -0.08 -2.04 1.95 -12.69 -0.02 -2.07 16 25 H 0.04 1.26 7.81 -2.38 -0.02 1.24 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.04 1.45 8.09 -2.39 -0.02 1.43 16 28 H 0.06 1.82 5.26 -2.39 -0.01 1.81 16 29 H 0.05 2.19 8.01 -2.38 -0.02 2.17 16 30 H 0.05 2.04 4.86 -2.39 -0.01 2.02 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.33 12.54 7.07 -89.69 -0.63 11.91 16 33 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.04 1.57 8.01 -2.39 -0.02 1.55 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.64 7.22 -2.38 -0.02 1.62 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.06 7.19 -2.39 -0.02 1.04 16 39 H 0.06 1.00 8.10 -2.38 -0.02 0.98 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.11 8.11 -2.38 -0.02 1.09 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.28 5.65 -2.38 -0.01 1.27 16 Total: -1.00 -65.77 315.72 2.12 -63.64 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.15 Total: 23.67 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 2.62 Total: -42.94 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -2.42 Total: -90.54 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.77 Total: 46.17 kcal Total: -65.77 2.12 -63.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.632 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds