Wall clock time and date at job start Mon Mar 30 2020 07:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 H 1.08999 * 109.47019 * 174.35451 * 3 2 1 5 5 C 1.50704 * 109.46903 * 54.35278 * 3 2 1 6 6 H 1.08001 * 119.99701 * 239.99658 * 5 3 2 7 7 C 1.37864 * 120.00164 * 60.00221 * 5 3 2 8 8 N 1.31522 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47236 * 59.99623 * 9 7 5 11 11 H 1.48506 * 109.47316 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46870 * 299.99649 * 9 7 5 13 13 N 1.46901 * 109.47018 * 294.35486 * 3 2 1 14 14 C 1.46903 * 110.99836 * 274.13438 * 13 3 2 15 15 H 1.08996 * 110.24271 * 34.46265 * 14 13 3 16 16 C 1.55203 * 110.13495 * 272.31525 * 14 13 3 17 17 C 1.55316 * 106.23329 * 237.40982 * 16 14 13 18 18 C 1.53275 * 103.09809 * 336.25745 * 17 16 14 19 19 H 1.09002 * 110.40342 * 283.37832 * 18 17 16 20 20 C 1.51779 * 115.78911 * 157.06203 * 18 17 16 21 21 C 1.53741 * 107.24935 * 182.95315 * 20 18 17 22 22 C 1.52568 * 111.49668 * 57.81564 * 21 20 18 23 23 C 1.53761 * 111.45107 * 305.21450 * 22 21 20 24 24 C 1.51611 * 107.26894 * 57.49064 * 23 22 21 25 25 H 1.09001 * 109.75599 * 54.75594 * 24 23 22 26 26 H 1.08999 * 109.47525 * 178.83971 * 1 2 3 27 27 H 1.09005 * 109.47001 * 298.84117 * 1 2 3 28 28 H 1.08996 * 109.47322 * 58.83693 * 1 2 3 29 29 H 1.09002 * 109.46345 * 239.99734 * 2 1 3 30 30 H 1.08997 * 109.46669 * 120.00490 * 2 1 3 31 31 H 0.97000 * 119.99923 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00018 * 38.08569 * 13 3 2 33 33 H 1.08998 * 110.04260 * 118.28201 * 16 14 13 34 34 H 1.08998 * 110.24682 * 356.64453 * 16 14 13 35 35 H 1.09003 * 110.72151 * 217.80623 * 17 16 14 36 36 H 1.09006 * 110.72175 * 94.71025 * 17 16 14 37 37 H 1.08999 * 109.90165 * 302.39086 * 20 18 17 38 38 H 1.09004 * 109.90365 * 63.51811 * 20 18 17 39 39 H 1.08994 * 109.07493 * 178.34035 * 21 20 18 40 40 H 1.09004 * 109.07224 * 297.29301 * 21 20 18 41 41 H 1.09002 * 109.07991 * 65.72460 * 22 21 20 42 42 H 1.08997 * 109.07946 * 184.77128 * 22 21 20 43 43 H 1.09003 * 109.89847 * 176.93544 * 23 22 21 44 44 H 1.09001 * 109.89445 * 298.05000 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1254 1.4441 0.1011 5 6 1.4268 2.1921 1.1546 6 1 0.8192 3.0655 0.9696 7 6 1.6415 1.7629 2.4471 8 7 2.3812 0.6990 2.6724 9 14 0.8820 2.6925 3.8783 10 1 -0.5966 2.6909 3.7407 11 1 1.2617 2.0336 5.1539 12 1 1.3777 4.0923 3.8781 13 7 1.6648 2.0945 -1.2618 14 6 2.6613 1.8294 -2.3080 15 1 3.0754 0.8281 -2.1895 16 6 3.7900 2.8933 -2.2528 17 6 3.8271 3.5601 -3.6551 18 6 3.2070 2.4928 -4.5637 19 1 3.9264 1.6984 -4.7627 20 6 2.6063 2.9991 -5.8623 21 6 1.9807 1.7902 -6.5771 22 6 0.9296 1.1084 -5.7065 23 6 1.5041 0.7149 -4.3356 24 6 2.0313 1.9806 -3.6885 25 1 1.2429 2.7325 -3.6537 26 1 -0.3634 -1.0274 -0.0208 27 1 -0.3633 0.4958 0.9002 28 1 -0.3634 0.5318 -0.8793 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.5319 0.3968 3.5817 32 1 0.7443 1.8064 -1.5579 33 1 4.7456 2.4135 -2.0412 34 1 3.5682 3.6392 -1.4896 35 1 4.8536 3.7721 -3.9542 36 1 3.2280 4.4707 -3.6652 37 1 1.8384 3.7432 -5.6507 38 1 3.3859 3.4364 -6.4862 39 1 1.5132 2.1263 -7.5026 40 1 2.7655 1.0725 -6.8162 41 1 0.0918 1.7901 -5.5596 42 1 0.5742 0.2114 -6.2137 43 1 0.7200 0.2802 -3.7157 44 1 2.3155 -0.0012 -4.4652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714286582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:02 Heat of formation + Delta-G solvation = -36.397218 kcal Electronic energy + Delta-G solvation = -19797.249897 eV Core-core repulsion = 17133.483202 eV Total energy + Delta-G solvation = -2663.766695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74939 -36.32916 -34.32361 -32.23488 -31.08576 -29.62622 -28.11610 -26.52758 -24.71961 -23.22157 -22.27991 -20.75150 -20.01658 -19.57734 -18.54360 -16.10988 -15.38053 -14.93503 -14.73886 -14.42665 -14.15245 -13.48069 -13.31945 -13.17031 -12.96615 -12.59312 -12.33985 -11.99806 -11.88618 -11.63059 -11.19208 -10.98544 -10.85626 -10.75424 -10.64796 -10.49770 -10.47009 -10.27174 -10.20538 -9.96453 -9.83302 -9.76635 -9.53455 -9.35871 -8.87448 -8.28298 -7.10379 -5.91657 -3.92790 3.37296 3.41547 3.44936 4.48777 4.64018 4.76992 4.82626 5.14850 5.29178 5.32589 5.39676 5.41027 5.56715 5.59870 5.65737 5.74901 5.77898 5.96081 6.02397 6.02788 6.07036 6.18625 6.22676 6.27663 6.32973 6.39164 6.41387 6.42901 6.45235 6.59896 6.63327 6.74027 6.78892 6.91111 6.96281 7.35587 7.41288 7.57341 7.77605 7.97156 8.38513 8.66813 8.74011 9.13114 9.70783 11.15370 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032856 B = 0.005609 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.004731 B = 4990.981954 C = 5410.070080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.092 3.908 15 H 0.036 0.964 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.093 4.093 19 H 0.070 0.930 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.094 4.094 25 H 0.078 0.922 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.009 0.991 30 H 0.090 0.910 31 H 0.258 0.742 32 H 0.325 0.675 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 1.084 -15.435 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.183 4.183 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.308 5.308 14 C -0.018 4.018 15 H 0.054 0.946 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.112 4.112 19 H 0.088 0.912 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.112 4.112 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.424 1.584 -15.097 15.186 hybrid contribution -0.552 -0.622 0.689 1.080 sum -0.128 0.962 -14.408 14.441 Atomic orbital electron populations 1.21557 0.97778 0.97868 1.01190 1.22091 0.94910 1.01322 1.00023 1.19196 0.95868 0.88433 0.85702 0.95050 1.21048 1.30286 1.11374 0.89793 0.92218 1.24905 0.95632 0.95183 0.98655 1.69881 1.39324 1.24128 1.20397 0.86662 0.79573 0.80037 0.81693 1.20460 1.21584 1.20415 1.60986 1.03442 1.62863 1.03546 1.21849 0.93654 0.96216 0.90127 0.94615 1.22588 0.97372 0.98641 0.96434 1.22171 0.99579 0.97874 0.95492 1.21820 0.96908 0.98372 0.94131 0.91168 1.21419 0.99532 0.97306 0.96279 1.21525 0.98405 0.97456 0.98022 1.21527 0.98203 0.99837 0.95800 1.21401 1.00369 0.97451 0.95538 1.21835 0.97625 0.97433 0.94357 0.90415 0.96051 0.91591 0.95205 0.97221 0.89130 0.93182 0.85673 0.93025 0.90285 0.92620 0.91801 0.91859 0.92384 0.92614 0.92496 0.92257 0.92576 0.91998 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.14 -3.40 5.48 -26.73 -0.15 -3.54 16 3 C 0.22 5.33 2.18 -68.86 -0.15 5.18 16 4 H 0.03 0.87 7.77 -51.93 -0.40 0.47 16 5 C -0.49 -13.18 7.35 -34.44 -0.25 -13.43 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.55 5.24 -17.82 -0.09 1.46 16 8 N -0.90 -25.50 11.38 55.43 0.63 -24.87 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.22 5.92 -100.00 -0.59 -14.81 16 14 C 0.09 1.66 2.67 -66.80 -0.18 1.48 16 15 H 0.04 0.70 7.17 -51.93 -0.37 0.33 16 16 C -0.11 -1.91 6.56 -24.34 -0.16 -2.07 16 17 C -0.11 -1.56 6.44 -25.36 -0.16 -1.72 16 18 C -0.09 -1.20 2.36 -89.90 -0.21 -1.41 16 19 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 20 C -0.11 -1.18 5.66 -26.97 -0.15 -1.33 16 21 C -0.12 -1.19 5.85 -26.57 -0.16 -1.34 16 22 C -0.12 -1.28 5.84 -26.56 -0.16 -1.44 16 23 C -0.11 -1.45 5.65 -27.04 -0.15 -1.61 16 24 C -0.09 -1.37 1.62 -90.38 -0.15 -1.51 16 25 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 28 H 0.03 0.58 6.41 -51.93 -0.33 0.25 16 29 H 0.01 0.20 7.47 -51.93 -0.39 -0.18 16 30 H 0.09 2.41 6.24 -51.93 -0.32 2.08 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.32 6.59 6.25 -39.29 -0.25 6.35 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.71 8.02 -51.93 -0.42 0.29 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -27.07 326.44 -10.12 -37.19 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.29 Total: 4.77 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -1.77 Total: -23.69 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.04 Total: -39.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.07 -10.12 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.794 kcal (2) G-P(sol) polarization free energy of solvation -27.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds