Wall clock time and date at job start Mon Mar 30 2020 07:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 H 1.08999 * 109.47019 * 174.35451 * 3 2 1 5 5 C 1.50704 * 109.46903 * 54.35278 * 3 2 1 6 6 H 1.08001 * 119.99701 * 239.99658 * 5 3 2 7 7 C 1.37864 * 120.00164 * 60.00221 * 5 3 2 8 8 N 1.31522 * 120.00178 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47236 * 59.99623 * 9 7 5 11 11 H 1.48506 * 109.47316 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46870 * 299.99649 * 9 7 5 13 13 N 1.46901 * 109.47018 * 294.35486 * 3 2 1 14 14 C 1.46903 * 110.99836 * 274.13438 * 13 3 2 15 15 H 1.08996 * 110.24271 * 34.46265 * 14 13 3 16 16 C 1.55203 * 110.13495 * 272.31525 * 14 13 3 17 17 C 1.55316 * 106.23329 * 237.40982 * 16 14 13 18 18 C 1.53275 * 103.09809 * 336.25745 * 17 16 14 19 19 H 1.09002 * 110.40342 * 283.37832 * 18 17 16 20 20 C 1.51779 * 115.78911 * 157.06203 * 18 17 16 21 21 C 1.53741 * 107.24935 * 182.95315 * 20 18 17 22 22 C 1.52568 * 111.49668 * 57.81564 * 21 20 18 23 23 C 1.53761 * 111.45107 * 305.21450 * 22 21 20 24 24 C 1.51611 * 107.26894 * 57.49064 * 23 22 21 25 25 H 1.09001 * 109.75599 * 54.75594 * 24 23 22 26 26 H 1.08999 * 109.47525 * 178.83971 * 1 2 3 27 27 H 1.09005 * 109.47001 * 298.84117 * 1 2 3 28 28 H 1.08996 * 109.47322 * 58.83693 * 1 2 3 29 29 H 1.09002 * 109.46345 * 239.99734 * 2 1 3 30 30 H 1.08997 * 109.46669 * 120.00490 * 2 1 3 31 31 H 0.97000 * 119.99923 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00018 * 38.08569 * 13 3 2 33 33 H 1.08998 * 110.04260 * 118.28201 * 16 14 13 34 34 H 1.08998 * 110.24682 * 356.64453 * 16 14 13 35 35 H 1.09003 * 110.72151 * 217.80623 * 17 16 14 36 36 H 1.09006 * 110.72175 * 94.71025 * 17 16 14 37 37 H 1.08999 * 109.90165 * 302.39086 * 20 18 17 38 38 H 1.09004 * 109.90365 * 63.51811 * 20 18 17 39 39 H 1.08994 * 109.07493 * 178.34035 * 21 20 18 40 40 H 1.09004 * 109.07224 * 297.29301 * 21 20 18 41 41 H 1.09002 * 109.07991 * 65.72460 * 22 21 20 42 42 H 1.08997 * 109.07946 * 184.77128 * 22 21 20 43 43 H 1.09003 * 109.89847 * 176.93544 * 23 22 21 44 44 H 1.09001 * 109.89445 * 298.05000 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1254 1.4441 0.1011 5 6 1.4268 2.1921 1.1546 6 1 0.8192 3.0655 0.9696 7 6 1.6415 1.7629 2.4471 8 7 2.3812 0.6990 2.6724 9 14 0.8820 2.6925 3.8783 10 1 -0.5966 2.6909 3.7407 11 1 1.2617 2.0336 5.1539 12 1 1.3777 4.0923 3.8781 13 7 1.6648 2.0945 -1.2618 14 6 2.6613 1.8294 -2.3080 15 1 3.0754 0.8281 -2.1895 16 6 3.7900 2.8933 -2.2528 17 6 3.8271 3.5601 -3.6551 18 6 3.2070 2.4928 -4.5637 19 1 3.9264 1.6984 -4.7627 20 6 2.6063 2.9991 -5.8623 21 6 1.9807 1.7902 -6.5771 22 6 0.9296 1.1084 -5.7065 23 6 1.5041 0.7149 -4.3356 24 6 2.0313 1.9806 -3.6885 25 1 1.2429 2.7325 -3.6537 26 1 -0.3634 -1.0274 -0.0208 27 1 -0.3633 0.4958 0.9002 28 1 -0.3634 0.5318 -0.8793 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.5319 0.3968 3.5817 32 1 0.7443 1.8064 -1.5579 33 1 4.7456 2.4135 -2.0412 34 1 3.5682 3.6392 -1.4896 35 1 4.8536 3.7721 -3.9542 36 1 3.2280 4.4707 -3.6652 37 1 1.8384 3.7432 -5.6507 38 1 3.3859 3.4364 -6.4862 39 1 1.5132 2.1263 -7.5026 40 1 2.7655 1.0725 -6.8162 41 1 0.0918 1.7901 -5.5596 42 1 0.5742 0.2114 -6.2137 43 1 0.7200 0.2802 -3.7157 44 1 2.3155 -0.0012 -4.4652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714286582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:01 Heat of formation + Delta-G solvation = -50.069007 kcal Electronic energy + Delta-G solvation = -19797.842751 eV Core-core repulsion = 17133.483202 eV Total energy + Delta-G solvation = -2664.359548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.93441 -38.00588 -35.64886 -33.98728 -32.58072 -31.08521 -29.24312 -28.36508 -26.27711 -25.10941 -23.34609 -21.75766 -21.59917 -20.75580 -20.13042 -18.10755 -16.88368 -16.74272 -16.06916 -15.67254 -15.31455 -15.03921 -14.62332 -14.39238 -14.30880 -14.18299 -14.09907 -13.59844 -13.10905 -12.88475 -12.76574 -12.52258 -12.46082 -12.35074 -12.09311 -12.00444 -11.82912 -11.61021 -11.53233 -11.37622 -11.35616 -11.29255 -10.96412 -10.87934 -10.58095 -10.41339 -8.86759 -8.03787 -6.12199 1.43515 1.44500 1.51948 2.46411 3.24732 3.55318 3.62076 3.76332 3.95651 4.18472 4.31049 4.36609 4.40810 4.53075 4.54455 4.59378 4.60915 4.67752 4.71204 4.75140 4.80496 4.81172 5.03036 5.08700 5.10448 5.11413 5.19177 5.24838 5.30232 5.33611 5.37653 5.38277 5.44897 5.47150 5.52941 5.56575 5.68761 5.71568 5.75077 5.91429 6.36264 6.75855 6.93910 7.03282 7.55886 9.01492 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.032856 B = 0.005609 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.004731 B = 4990.981954 C = 5410.070080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C 0.225 3.775 4 H -0.008 1.008 5 C -0.498 4.498 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.089 3.911 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.085 4.085 19 H 0.072 0.928 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.087 4.087 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.329 0.671 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 1.549 -17.500 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.116 3.884 4 H 0.010 0.990 5 C -0.537 4.537 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.309 5.309 14 C -0.022 4.022 15 H 0.035 0.965 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.104 4.104 19 H 0.090 0.910 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.106 4.106 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.346 2.055 -17.180 17.306 hybrid contribution -0.263 -0.778 1.341 1.573 sum -0.609 1.277 -15.838 15.901 Atomic orbital electron populations 1.21428 0.95865 0.99253 1.00826 1.21927 0.96517 1.00173 0.98956 1.18902 0.93222 0.89286 0.86992 0.99039 1.21264 1.30213 1.11264 0.90959 0.93124 1.25595 0.96013 0.95910 1.00977 1.70020 1.40265 1.25273 1.20728 0.85726 0.79078 0.78732 0.78751 1.19622 1.21264 1.20228 1.60887 1.04377 1.62431 1.03248 1.21949 0.93464 0.95411 0.91341 0.96538 1.22569 0.96776 0.97875 0.98114 1.22117 1.01010 0.97886 0.93167 1.21792 0.95967 0.97930 0.94711 0.90967 1.21406 0.99914 0.97679 0.95146 1.21522 0.98283 0.97075 0.98328 1.21504 0.98421 1.00575 0.94478 1.21400 1.00026 0.96528 0.96756 1.21737 0.98095 0.98264 0.92495 0.91029 0.93882 0.93971 0.93318 0.96089 0.92262 0.93301 0.85189 0.93501 0.93184 0.90720 0.91555 0.91972 0.90683 0.90783 0.92032 0.92235 0.91286 0.93148 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.40 71.98 0.68 -4.29 16 2 C -0.14 -6.55 5.48 30.59 0.17 -6.39 16 3 C 0.22 11.49 2.18 44.17 0.10 11.59 16 4 H -0.01 -0.49 7.77 -2.39 -0.02 -0.51 16 5 C -0.50 -27.68 7.35 25.60 0.19 -27.49 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.72 5.24 84.65 0.44 1.17 16 8 N -0.92 -53.77 11.38 21.44 0.24 -53.53 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.68 -29.11 5.92 -470.29 -2.79 -31.89 16 14 C 0.09 3.24 2.67 45.50 0.12 3.36 16 15 H 0.02 0.67 7.17 -2.39 -0.02 0.65 16 16 C -0.11 -4.01 6.56 32.15 0.21 -3.80 16 17 C -0.10 -2.72 6.44 31.48 0.20 -2.52 16 18 C -0.09 -2.01 2.36 -10.33 -0.02 -2.03 16 19 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 20 C -0.10 -1.93 5.66 30.44 0.17 -1.76 16 21 C -0.11 -1.92 5.85 30.70 0.18 -1.74 16 22 C -0.11 -2.16 5.84 30.71 0.18 -1.99 16 23 C -0.11 -2.72 5.65 30.39 0.17 -2.55 16 24 C -0.09 -2.45 1.62 -10.64 -0.02 -2.47 16 25 H 0.07 2.13 7.90 -2.39 -0.02 2.11 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.99 7.05 -2.38 -0.02 1.97 16 28 H 0.05 1.86 6.41 -2.39 -0.02 1.85 16 29 H 0.02 0.93 7.47 -2.39 -0.02 0.91 16 30 H 0.06 3.24 6.24 -2.39 -0.01 3.23 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.33 13.39 6.25 -89.69 -0.56 12.83 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 2.02 7.95 -2.39 -0.02 2.00 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 1.19 8.02 -2.39 -0.02 1.17 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 Total: -1.00 -59.40 326.44 2.63 -56.77 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.38 Total: 22.99 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 2.77 Total: -40.91 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.54 Total: -85.42 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.40 2.63 -56.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.701 kcal (2) G-P(sol) polarization free energy of solvation -59.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds