Wall clock time and date at job start Mon Mar 30 2020 07:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09003 * 109.46827 * 175.92319 * 3 2 1 5 5 C 1.50704 * 109.46608 * 55.93349 * 3 2 1 6 6 H 1.08005 * 119.99694 * 239.99361 * 5 3 2 7 7 C 1.37874 * 120.00431 * 59.99889 * 5 3 2 8 8 N 1.31517 * 119.99938 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00248 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47016 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46764 * 119.99827 * 9 7 5 12 12 H 1.48494 * 109.47118 * 239.99877 * 9 7 5 13 13 N 1.46890 * 109.47564 * 295.93181 * 3 2 1 14 14 C 1.46901 * 111.00182 * 271.35936 * 13 3 2 15 15 H 1.09002 * 109.98466 * 35.78687 * 14 13 3 16 16 C 1.53727 * 109.99666 * 274.48629 * 14 13 3 17 17 C 1.53800 * 107.08154 * 240.59891 * 16 14 13 18 18 C 1.54313 * 105.56900 * 17.97256 * 17 16 14 19 19 H 1.08992 * 109.89629 * 212.08990 * 18 17 16 20 20 C 1.52463 * 109.19695 * 91.50071 * 18 17 16 21 21 C 1.53313 * 108.22258 * 186.85225 * 20 18 17 22 22 C 1.52445 * 108.09006 * 67.71239 * 21 20 18 23 23 C 1.50689 * 112.60951 * 303.01824 * 22 21 20 24 24 C 1.49590 * 117.81583 * 36.36443 * 23 22 21 25 25 H 1.08999 * 106.91506 * 213.66401 * 24 23 22 26 26 H 1.09003 * 109.47103 * 54.71287 * 1 2 3 27 27 H 1.08996 * 109.47469 * 174.71110 * 1 2 3 28 28 H 1.09004 * 109.46943 * 294.71225 * 1 2 3 29 29 H 1.09006 * 109.46683 * 240.00747 * 2 1 3 30 30 H 1.08998 * 109.47167 * 120.00714 * 2 1 3 31 31 H 0.97001 * 119.99944 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00388 * 147.40493 * 13 3 2 33 33 H 1.09003 * 109.91666 * 359.95666 * 16 14 13 34 34 H 1.08999 * 109.91635 * 121.04523 * 16 14 13 35 35 H 1.08994 * 110.23408 * 137.00150 * 17 16 14 36 36 H 1.09007 * 110.22886 * 258.95367 * 17 16 14 37 37 H 1.09005 * 109.71444 * 306.53621 * 20 18 17 38 38 H 1.09003 * 109.71168 * 67.12234 * 20 18 17 39 39 H 1.09001 * 109.73905 * 187.35996 * 21 20 18 40 40 H 1.09001 * 109.73882 * 308.06626 * 21 20 18 41 41 H 1.09006 * 108.85538 * 63.82323 * 22 21 20 42 42 H 1.08996 * 108.85449 * 182.20718 * 22 21 20 43 43 H 1.09001 * 107.78014 * 158.47640 * 23 22 21 44 44 H 1.09002 * 107.77942 * 274.29716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4433 0.0731 5 6 1.4570 2.1813 1.1771 6 1 0.8448 3.0564 1.0159 7 6 1.7052 1.7402 2.4596 8 7 2.4503 0.6744 2.6558 9 14 0.9831 2.6565 3.9185 10 1 0.1878 3.8125 3.4326 11 1 0.1049 1.7421 4.6918 12 1 2.0820 3.1426 4.7909 13 7 1.6323 2.1061 -1.2454 14 6 2.6339 1.9056 -2.3011 15 1 3.0700 0.9102 -2.2168 16 6 3.7349 2.9728 -2.1907 17 6 3.7274 3.7675 -3.5074 18 6 2.3609 3.4732 -4.1611 19 1 2.4582 3.4870 -5.2465 20 6 1.3550 4.5296 -3.7174 21 6 -0.0287 4.1221 -4.2368 22 6 -0.4597 2.8610 -3.4966 23 6 0.5285 1.7336 -3.6489 24 6 1.9832 2.0804 -3.6839 25 1 2.4631 1.3678 -4.3547 26 1 -0.3633 0.5937 -0.8389 27 1 -0.3634 -1.0232 -0.0947 28 1 -0.3633 0.4296 0.9336 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.6252 0.3643 3.5581 32 1 1.4601 3.0885 -1.0922 33 1 3.5239 3.6388 -1.3540 34 1 4.7035 2.4937 -2.0484 35 1 3.8263 4.8339 -3.3047 36 1 4.5359 3.4299 -4.1561 37 1 1.3372 4.5861 -2.6289 38 1 1.6331 5.4988 -4.1313 39 1 -0.7436 4.9228 -4.0471 40 1 0.0243 3.9209 -5.3068 41 1 -0.5679 3.0939 -2.4372 42 1 -1.4256 2.5377 -3.8845 43 1 0.3717 1.0398 -2.8230 44 1 0.2908 1.2051 -4.5721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714286584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:04 Heat of formation + Delta-G solvation = -33.451157 kcal Electronic energy + Delta-G solvation = -20350.983997 eV Core-core repulsion = 17687.345052 eV Total energy + Delta-G solvation = -2663.638944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80260 -35.86123 -34.18051 -32.30843 -31.02278 -29.89125 -28.12364 -26.46738 -24.81370 -23.17384 -22.48116 -20.84045 -20.09579 -18.70883 -18.09831 -16.20189 -15.55261 -14.76434 -14.56217 -14.32617 -14.02805 -13.71077 -13.50771 -12.91111 -12.79630 -12.32317 -11.89424 -11.82406 -11.73341 -11.42134 -11.29443 -11.08491 -10.93355 -10.80963 -10.50376 -10.45569 -10.33127 -10.05908 -9.94781 -9.82177 -9.66989 -9.53310 -9.45732 -9.15477 -8.71170 -8.43644 -7.07126 -5.98719 -4.03186 3.29079 3.37736 3.41085 4.42633 4.86019 4.92796 4.98344 5.31259 5.37608 5.42819 5.52227 5.53542 5.67181 5.80427 5.85994 5.87418 6.00202 6.07041 6.16739 6.21067 6.29480 6.32599 6.38482 6.47437 6.52070 6.54016 6.60311 6.70394 6.75630 6.79094 6.85296 6.93503 6.98876 7.14501 7.29875 7.43531 7.57926 7.80447 7.85245 7.93178 8.31493 8.49650 8.77501 9.08838 9.61519 11.07295 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.006910 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.710385 B = 4051.095103 C = 4140.892236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.089 3.911 15 H 0.068 0.932 16 C -0.150 4.150 17 C -0.118 4.118 18 C -0.079 4.079 19 H 0.060 0.940 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.107 4.107 23 C -0.092 4.092 24 C -0.066 4.066 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.010 0.990 28 H 0.051 0.949 29 H 0.009 0.991 30 H 0.081 0.919 31 H 0.258 0.742 32 H 0.330 0.670 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 4.380 -12.371 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.138 4.138 3 C 0.107 3.893 4 H 0.018 0.982 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.301 5.301 14 C -0.022 4.022 15 H 0.086 0.914 16 C -0.189 4.189 17 C -0.155 4.155 18 C -0.097 4.097 19 H 0.079 0.921 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.130 4.130 24 C -0.086 4.086 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.416 3.708 -12.404 13.023 hybrid contribution 0.524 0.953 1.208 1.625 sum -0.893 4.661 -11.196 12.160 Atomic orbital electron populations 1.21453 0.97611 0.96951 1.01532 1.21400 0.95007 0.98413 0.98955 1.19104 0.93575 0.91556 0.85035 0.98199 1.21247 1.31228 1.11755 0.90553 0.92478 1.24870 0.95202 0.95012 0.98729 1.69907 1.38243 1.23514 1.21089 0.86590 0.78895 0.79899 0.82918 1.19831 1.21097 1.21271 1.60773 1.42910 1.17586 1.08826 1.22141 0.90384 0.97306 0.92403 0.91372 1.22803 1.00151 0.98656 0.97340 1.22214 0.96789 0.99671 0.96861 1.21235 0.94538 0.95278 0.98663 0.92147 1.21502 0.94641 0.96922 1.01480 1.21454 0.96682 0.97856 0.99338 1.20839 0.97508 0.94767 1.01382 1.20052 0.92861 0.98897 1.01200 1.20520 0.96299 0.95382 0.96352 0.93235 0.93380 0.97111 0.92998 0.97269 0.90082 0.93152 0.85166 0.91531 0.92687 0.92246 0.92644 0.91320 0.93026 0.92757 0.92902 0.91137 0.93525 0.89386 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.43 37.16 0.35 -2.27 16 2 C -0.10 -2.36 5.57 -26.73 -0.15 -2.51 16 3 C 0.21 5.14 2.13 -68.87 -0.15 4.99 16 4 H 0.00 0.01 7.66 -51.93 -0.40 -0.39 16 5 C -0.51 -13.31 7.23 -34.44 -0.25 -13.56 16 6 H 0.06 1.50 7.56 -52.48 -0.40 1.10 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.98 11.36 55.43 0.63 -24.35 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.67 -13.14 3.37 -100.11 -0.34 -13.47 16 14 C 0.09 1.54 2.78 -66.91 -0.19 1.36 16 15 H 0.07 1.29 7.43 -51.93 -0.39 0.91 16 16 C -0.15 -2.43 6.24 -25.94 -0.16 -2.59 16 17 C -0.12 -1.58 6.31 -25.63 -0.16 -1.74 16 18 C -0.08 -1.04 2.85 -90.72 -0.26 -1.30 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 20 C -0.11 -1.40 5.07 -26.84 -0.14 -1.53 16 21 C -0.12 -1.44 5.99 -26.85 -0.16 -1.60 16 22 C -0.11 -1.51 5.74 -28.17 -0.16 -1.67 16 23 C -0.09 -1.39 4.73 -29.57 -0.14 -1.53 16 24 C -0.07 -0.98 2.56 -92.39 -0.24 -1.22 16 25 H 0.05 0.72 8.11 -51.93 -0.42 0.29 16 26 H 0.05 1.01 6.68 -51.93 -0.35 0.66 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 1.25 7.31 -51.93 -0.38 0.87 16 29 H 0.01 0.20 7.69 -51.93 -0.40 -0.20 16 30 H 0.08 2.17 6.19 -51.93 -0.32 1.85 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.33 6.58 6.68 -39.29 -0.26 6.32 16 33 H 0.07 1.19 7.59 -51.93 -0.39 0.79 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.07 1.00 7.17 -51.93 -0.37 0.63 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.54 6.02 -51.93 -0.31 1.22 16 44 H 0.03 0.39 8.13 -51.93 -0.42 -0.03 16 LS Contribution 320.93 15.07 4.84 4.84 Total: -1.00 -26.02 320.93 -9.93 -35.94 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.15 Total: 4.53 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.89 Total: -23.55 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.29 Total: -37.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.02 -9.93 -35.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.494 kcal (2) G-P(sol) polarization free energy of solvation -26.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds