Wall clock time and date at job start Mon Mar 30 2020 07:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09003 * 109.46827 * 175.92319 * 3 2 1 5 5 C 1.50704 * 109.46608 * 55.93349 * 3 2 1 6 6 H 1.08005 * 119.99694 * 239.99361 * 5 3 2 7 7 C 1.37874 * 120.00431 * 59.99889 * 5 3 2 8 8 N 1.31517 * 119.99938 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00248 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47016 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46764 * 119.99827 * 9 7 5 12 12 H 1.48494 * 109.47118 * 239.99877 * 9 7 5 13 13 N 1.46890 * 109.47564 * 295.93181 * 3 2 1 14 14 C 1.46901 * 111.00182 * 271.35936 * 13 3 2 15 15 H 1.09002 * 109.98466 * 35.78687 * 14 13 3 16 16 C 1.53727 * 109.99666 * 274.48629 * 14 13 3 17 17 C 1.53800 * 107.08154 * 240.59891 * 16 14 13 18 18 C 1.54313 * 105.56900 * 17.97256 * 17 16 14 19 19 H 1.08992 * 109.89629 * 212.08990 * 18 17 16 20 20 C 1.52463 * 109.19695 * 91.50071 * 18 17 16 21 21 C 1.53313 * 108.22258 * 186.85225 * 20 18 17 22 22 C 1.52445 * 108.09006 * 67.71239 * 21 20 18 23 23 C 1.50689 * 112.60951 * 303.01824 * 22 21 20 24 24 C 1.49590 * 117.81583 * 36.36443 * 23 22 21 25 25 H 1.08999 * 106.91506 * 213.66401 * 24 23 22 26 26 H 1.09003 * 109.47103 * 54.71287 * 1 2 3 27 27 H 1.08996 * 109.47469 * 174.71110 * 1 2 3 28 28 H 1.09004 * 109.46943 * 294.71225 * 1 2 3 29 29 H 1.09006 * 109.46683 * 240.00747 * 2 1 3 30 30 H 1.08998 * 109.47167 * 120.00714 * 2 1 3 31 31 H 0.97001 * 119.99944 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00388 * 147.40493 * 13 3 2 33 33 H 1.09003 * 109.91666 * 359.95666 * 16 14 13 34 34 H 1.08999 * 109.91635 * 121.04523 * 16 14 13 35 35 H 1.08994 * 110.23408 * 137.00150 * 17 16 14 36 36 H 1.09007 * 110.22886 * 258.95367 * 17 16 14 37 37 H 1.09005 * 109.71444 * 306.53621 * 20 18 17 38 38 H 1.09003 * 109.71168 * 67.12234 * 20 18 17 39 39 H 1.09001 * 109.73905 * 187.35996 * 21 20 18 40 40 H 1.09001 * 109.73882 * 308.06626 * 21 20 18 41 41 H 1.09006 * 108.85538 * 63.82323 * 22 21 20 42 42 H 1.08996 * 108.85449 * 182.20718 * 22 21 20 43 43 H 1.09001 * 107.78014 * 158.47640 * 23 22 21 44 44 H 1.09002 * 107.77942 * 274.29716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4433 0.0731 5 6 1.4570 2.1813 1.1771 6 1 0.8448 3.0564 1.0159 7 6 1.7052 1.7402 2.4596 8 7 2.4503 0.6744 2.6558 9 14 0.9831 2.6565 3.9185 10 1 0.1878 3.8125 3.4326 11 1 0.1049 1.7421 4.6918 12 1 2.0820 3.1426 4.7909 13 7 1.6323 2.1061 -1.2454 14 6 2.6339 1.9056 -2.3011 15 1 3.0700 0.9102 -2.2168 16 6 3.7349 2.9728 -2.1907 17 6 3.7274 3.7675 -3.5074 18 6 2.3609 3.4732 -4.1611 19 1 2.4582 3.4870 -5.2465 20 6 1.3550 4.5296 -3.7174 21 6 -0.0287 4.1221 -4.2368 22 6 -0.4597 2.8610 -3.4966 23 6 0.5285 1.7336 -3.6489 24 6 1.9832 2.0804 -3.6839 25 1 2.4631 1.3678 -4.3547 26 1 -0.3633 0.5937 -0.8389 27 1 -0.3634 -1.0232 -0.0947 28 1 -0.3633 0.4296 0.9336 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.6252 0.3643 3.5581 32 1 1.4601 3.0885 -1.0922 33 1 3.5239 3.6388 -1.3540 34 1 4.7035 2.4937 -2.0484 35 1 3.8263 4.8339 -3.3047 36 1 4.5359 3.4299 -4.1561 37 1 1.3372 4.5861 -2.6289 38 1 1.6331 5.4988 -4.1313 39 1 -0.7436 4.9228 -4.0471 40 1 0.0243 3.9209 -5.3068 41 1 -0.5679 3.0939 -2.4372 42 1 -1.4256 2.5377 -3.8845 43 1 0.3717 1.0398 -2.8230 44 1 0.2908 1.2051 -4.5721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714286584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:03 Heat of formation + Delta-G solvation = -45.126185 kcal Electronic energy + Delta-G solvation = -20351.490264 eV Core-core repulsion = 17687.345052 eV Total energy + Delta-G solvation = -2664.145211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04828 -37.56740 -35.51793 -33.99408 -32.63305 -31.40847 -29.35872 -28.21642 -26.36560 -25.06905 -23.61099 -22.04769 -21.55227 -20.40748 -19.38148 -18.07049 -17.09538 -16.41799 -15.92580 -15.62333 -15.37008 -15.24487 -15.02152 -14.44439 -14.27082 -13.73844 -13.63141 -13.49134 -13.07192 -12.84378 -12.65425 -12.59592 -12.42694 -12.36848 -12.24998 -11.97844 -11.71945 -11.56572 -11.49909 -11.31699 -11.28819 -10.76604 -10.74124 -10.62451 -10.59966 -10.49962 -8.77157 -8.07143 -6.17921 1.38871 1.42135 1.52043 2.43128 3.21911 3.63777 3.73793 3.80258 4.03635 4.29304 4.33699 4.39535 4.46056 4.62392 4.65881 4.73569 4.76298 4.80319 4.83697 4.94969 4.97873 5.02389 5.09245 5.11797 5.20794 5.24043 5.24675 5.33232 5.38685 5.40200 5.49456 5.54435 5.62285 5.63700 5.72666 5.74260 5.82198 5.88822 5.96767 6.01438 6.31638 6.61480 6.92706 7.15270 7.50959 8.98074 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.006910 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.710385 B = 4051.095103 C = 4140.892236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.093 4.093 3 C 0.225 3.775 4 H -0.039 1.039 5 C -0.515 4.515 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.656 5.656 14 C 0.085 3.915 15 H 0.046 0.954 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.074 4.074 19 H 0.084 0.916 20 C -0.108 4.108 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.090 4.090 24 C -0.061 4.061 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 5.650 -14.318 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C 0.116 3.884 4 H -0.022 1.022 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.286 5.286 14 C -0.026 4.026 15 H 0.064 0.936 16 C -0.188 4.188 17 C -0.147 4.147 18 C -0.092 4.092 19 H 0.102 0.898 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.127 4.127 24 C -0.080 4.080 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.228 4.987 -14.369 15.372 hybrid contribution 0.811 0.520 1.794 2.036 sum -1.417 5.507 -12.575 13.800 Atomic orbital electron populations 1.21298 0.96038 0.98167 1.00680 1.21261 0.96258 0.97966 0.97733 1.18844 0.90984 0.92057 0.86526 1.02160 1.21492 1.30809 1.11638 0.91460 0.92738 1.25583 0.95627 0.95747 1.01246 1.70044 1.39415 1.24808 1.21470 0.85652 0.78147 0.78889 0.79831 1.19074 1.20958 1.21131 1.60723 1.43519 1.17078 1.07294 1.22224 0.90564 0.96553 0.93258 0.93607 1.22718 0.99222 0.98223 0.98592 1.22181 0.97688 0.99734 0.95080 1.21232 0.94174 0.93942 0.99877 0.89793 1.21502 0.95036 0.97811 1.00171 1.21423 0.96431 0.97049 0.99859 1.20807 0.97835 0.95430 1.00265 1.19996 0.93124 0.98864 1.00751 1.20498 0.96120 0.97092 0.94277 0.92382 0.92350 0.95195 0.95186 0.96518 0.93161 0.93264 0.85342 0.93740 0.93355 0.91203 0.91016 0.93586 0.91138 0.91805 0.91309 0.93561 0.92510 0.92239 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.66 9.43 71.98 0.68 -3.98 16 2 C -0.09 -4.58 5.57 30.60 0.17 -4.41 16 3 C 0.22 11.15 2.13 44.17 0.09 11.24 16 4 H -0.04 -2.22 7.66 -2.39 -0.02 -2.24 16 5 C -0.52 -27.60 7.23 25.60 0.19 -27.42 16 6 H 0.05 2.90 7.56 -2.91 -0.02 2.87 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.92 -53.08 11.36 21.45 0.24 -52.84 16 9 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.66 -26.33 3.37 -470.65 -1.58 -27.91 16 14 C 0.09 2.97 2.78 45.44 0.13 3.10 16 15 H 0.05 1.79 7.43 -2.39 -0.02 1.77 16 16 C -0.15 -4.82 6.24 31.11 0.19 -4.62 16 17 C -0.11 -2.68 6.31 31.31 0.20 -2.48 16 18 C -0.07 -1.73 2.85 -10.86 -0.03 -1.76 16 19 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.11 -2.49 5.07 30.52 0.15 -2.33 16 21 C -0.11 -2.39 5.99 30.52 0.18 -2.21 16 22 C -0.11 -2.77 5.74 29.66 0.17 -2.60 16 23 C -0.09 -2.54 4.73 28.75 0.14 -2.40 16 24 C -0.06 -1.70 2.56 -11.94 -0.03 -1.73 16 25 H 0.06 1.54 8.11 -2.39 -0.02 1.52 16 26 H 0.06 2.45 6.68 -2.39 -0.02 2.44 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.03 1.44 7.31 -2.38 -0.02 1.42 16 29 H 0.02 0.76 7.69 -2.38 -0.02 0.74 16 30 H 0.05 2.79 6.19 -2.39 -0.01 2.77 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.33 13.41 6.68 -89.69 -0.60 12.81 16 33 H 0.04 1.62 7.59 -2.39 -0.02 1.61 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.60 7.85 -2.39 -0.02 1.58 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.05 1.28 7.17 -2.38 -0.02 1.26 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 41 H 0.05 1.43 7.91 -2.38 -0.02 1.41 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 2.03 6.02 -2.39 -0.01 2.02 16 44 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 Total: -1.00 -56.88 320.93 3.71 -53.17 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.35 Total: 22.02 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.68 Total: -40.23 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -1.34 Total: -80.75 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -56.88 3.71 -53.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714286584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.039 kcal (2) G-P(sol) polarization free energy of solvation -56.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds