Wall clock time and date at job start Mon Mar 30 2020 07:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 N 1.46893 * 109.46934 * 119.99955 * 2 1 3 5 5 C 1.46905 * 111.00107 * 73.14160 * 4 2 1 6 6 C 1.50701 * 109.47058 * 66.04103 * 5 4 2 7 7 H 1.08001 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00034 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00061 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00090 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47531 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47440 * 120.00428 * 10 8 6 13 13 H 1.48507 * 109.47017 * 240.00388 * 10 8 6 14 14 C 1.46897 * 111.00593 * 309.18655 * 4 2 1 15 15 C 1.52996 * 109.47396 * 199.87767 * 14 4 2 16 16 C 1.52999 * 109.47066 * 174.80908 * 15 14 4 17 17 H 1.09002 * 115.56255 * 330.68314 * 16 15 14 18 18 C 1.52995 * 117.50148 * 116.37632 * 16 15 14 19 19 C 1.52994 * 60.00189 * 107.49041 * 18 16 15 20 20 H 1.09005 * 117.52272 * 107.48437 * 19 18 16 21 21 C 1.53002 * 117.49775 * 252.50904 * 19 18 16 22 22 C 1.52996 * 117.51750 * 179.90141 * 21 19 18 23 23 C 1.52994 * 117.50444 * 248.53437 * 21 19 18 24 24 H 1.09004 * 109.47072 * 300.00072 * 1 2 3 25 25 H 1.09007 * 109.47054 * 59.99956 * 1 2 3 26 26 H 1.08997 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47390 * 240.00354 * 2 1 3 28 28 H 1.08999 * 109.47202 * 174.42143 * 3 2 1 29 29 H 1.08998 * 109.47656 * 294.42421 * 3 2 1 30 30 H 1.09004 * 109.46958 * 54.42574 * 3 2 1 31 31 H 1.08998 * 109.47323 * 186.04692 * 5 4 2 32 32 H 1.09003 * 109.46947 * 306.04690 * 5 4 2 33 33 H 0.96996 * 120.00356 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47105 * 79.87204 * 14 4 2 35 35 H 1.09002 * 109.46624 * 319.87735 * 14 4 2 36 36 H 1.08997 * 109.47468 * 54.80461 * 15 14 4 37 37 H 1.08999 * 109.47131 * 294.80183 * 15 14 4 38 38 H 1.09000 * 117.50170 * 359.97438 * 18 16 15 39 39 H 1.09009 * 117.50088 * 214.97952 * 18 16 15 40 40 H 1.09007 * 115.55064 * 34.20910 * 21 19 18 41 41 H 1.09002 * 117.50579 * 214.97200 * 22 21 19 42 42 H 1.09002 * 117.50262 * 0.02562 * 22 21 19 43 43 H 1.09007 * 117.49664 * 359.97438 * 23 21 19 44 44 H 1.08995 * 117.50505 * 144.99937 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8201 -2.1436 1.0878 6 6 2.6873 -2.6863 -0.0187 7 1 3.3234 -2.0199 -0.5824 8 6 2.6687 -4.0335 -0.3115 9 7 1.8938 -4.8448 0.3746 10 14 3.7442 -4.7062 -1.6826 11 1 4.5161 -3.5960 -2.2964 12 1 4.6827 -5.7139 -1.1265 13 1 2.8885 -5.3437 -2.7154 14 6 1.3781 -0.1646 2.4109 15 6 2.2256 -0.5217 3.6336 16 6 1.6278 0.1369 4.8785 17 1 1.0945 1.0718 4.7058 18 6 1.1006 -0.7838 5.9808 19 6 2.3997 -0.0037 6.1920 20 1 2.3747 0.8387 6.8832 21 6 3.7104 -0.7924 6.1601 22 6 5.0099 -0.0124 6.3689 23 6 4.4834 -0.9314 7.4731 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1254 1.4441 0.0999 29 1 1.7605 1.9268 -0.9356 30 1 1.5974 1.9843 0.8359 31 1 2.0912 -2.6211 2.0294 32 1 0.7735 -2.3503 0.8637 33 1 1.8804 -5.7925 0.1684 34 1 0.3854 -0.6020 2.5165 35 1 1.2912 0.9192 2.3331 36 1 3.2445 -0.1635 3.4868 37 1 2.2363 -1.6037 3.7648 38 1 1.1793 -1.8589 5.8191 39 1 0.2204 -0.4547 6.5334 40 1 3.7350 -1.6357 5.4699 41 1 5.8896 -0.3425 5.8162 42 1 4.9314 1.0629 6.5295 43 1 4.0584 -0.4606 8.3596 44 1 5.0166 -1.8661 7.6468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714822737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:01 Heat of formation + Delta-G solvation = 34.036788 kcal Electronic energy + Delta-G solvation = -18984.659317 eV Core-core repulsion = 16323.946870 eV Total energy + Delta-G solvation = -2660.712447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.81420 -37.59121 -35.39532 -32.74748 -31.58899 -29.27460 -26.56998 -26.14645 -23.67069 -22.93307 -22.27138 -21.96940 -20.91605 -18.92567 -18.52768 -16.21363 -15.75041 -15.41366 -15.06683 -14.43183 -14.07617 -13.97855 -13.44707 -13.04405 -12.92815 -12.55905 -12.08526 -12.01959 -11.61989 -11.49231 -11.44382 -11.22436 -11.14645 -10.99238 -10.69770 -10.67473 -10.63840 -10.55162 -10.42499 -10.22979 -9.92143 -9.61859 -9.41014 -9.20901 -9.01565 -8.38949 -7.09404 -5.98665 -3.98881 3.32623 3.40223 3.45126 3.61388 4.29452 4.45799 4.57971 4.78182 4.98665 5.03897 5.26407 5.36342 5.37016 5.40164 5.45234 5.59971 5.64938 5.66963 5.81327 5.86832 5.91432 5.98270 6.00952 6.09105 6.15890 6.18983 6.23384 6.26332 6.32391 6.36785 6.43317 6.46388 6.58811 6.71406 6.86087 6.88354 6.96488 7.41723 7.49706 7.87501 8.19643 8.33296 8.65195 9.09730 9.64986 11.12197 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.005829 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.322454 B = 4802.550148 C = 5736.903644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.059 3.941 15 C -0.079 4.079 16 C -0.136 4.136 17 H 0.099 0.901 18 C -0.176 4.176 19 C -0.123 4.123 20 H 0.097 0.903 21 C -0.117 4.117 22 C -0.177 4.177 23 C -0.183 4.183 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.030 0.970 32 H -0.007 1.007 33 H 0.259 0.741 34 H 0.024 0.976 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 10.666 9.540 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.254 5.254 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.070 4.070 15 C -0.117 4.117 16 C -0.154 4.154 17 H 0.117 0.883 18 C -0.213 4.213 19 C -0.141 4.141 20 H 0.115 0.885 21 C -0.135 4.135 22 C -0.214 4.214 23 C -0.220 4.220 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.621 10.559 9.583 14.273 hybrid contribution -0.446 -0.712 -0.710 1.100 sum 0.176 9.847 8.873 13.256 Atomic orbital electron populations 1.22437 0.98943 1.01977 1.00450 1.21582 0.91587 0.93968 0.95774 1.21850 1.01584 0.96302 0.99940 1.62297 1.56131 1.07185 0.99835 1.19755 0.95218 0.80973 0.97478 1.21229 1.23841 0.92550 1.16524 0.91933 1.24974 0.95866 0.97054 0.96750 1.69969 1.39198 1.03983 1.40785 0.86506 0.80374 0.78967 0.81967 1.19681 1.21098 1.21206 1.21996 0.95288 0.98536 0.91178 1.21113 0.99447 1.00150 0.91014 1.22428 1.02415 1.00364 0.90237 0.88319 1.23102 0.96436 0.98659 1.03074 1.21759 0.91026 1.00763 1.00564 0.88496 1.21729 0.90711 1.01332 0.99701 1.22895 0.97748 0.97936 1.02798 1.22918 1.04499 1.01651 0.92929 0.93520 0.93480 0.92189 0.89103 0.92267 0.93510 0.93706 0.95227 0.98957 0.93110 0.95797 0.92367 0.90988 0.91631 0.88604 0.89325 0.87240 0.88790 0.89071 0.89185 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.49 37.16 0.32 -2.87 16 2 C 0.08 1.54 2.76 -67.72 -0.19 1.36 16 3 C -0.14 -2.21 9.11 37.16 0.34 -1.87 16 4 N -0.53 -11.30 4.35 -228.09 -0.99 -12.29 16 5 C 0.19 4.93 4.45 -4.97 -0.02 4.91 16 6 C -0.50 -14.07 8.32 -34.44 -0.29 -14.36 16 7 H 0.06 1.75 7.22 -52.49 -0.38 1.37 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.06 1.06 3.47 -3.83 -0.01 1.04 16 15 C -0.08 -1.33 4.33 -26.73 -0.12 -1.45 16 16 C -0.14 -1.86 5.74 -90.62 -0.52 -2.38 16 17 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 18 C -0.18 -2.26 9.90 -26.74 -0.26 -2.52 16 19 C -0.12 -1.52 5.85 -90.62 -0.53 -2.05 16 20 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.12 -1.49 5.09 -90.62 -0.46 -1.95 16 22 C -0.18 -2.02 10.25 -26.73 -0.27 -2.29 16 23 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 24 H 0.05 0.76 6.66 -51.93 -0.35 0.42 16 25 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 1.21 6.71 -51.93 -0.35 0.86 16 27 H 0.09 1.97 6.61 -51.93 -0.34 1.63 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 31 H 0.03 0.82 6.73 -51.93 -0.35 0.47 16 32 H -0.01 -0.20 6.57 -51.93 -0.34 -0.54 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.02 0.45 7.34 -51.93 -0.38 0.07 16 35 H 0.06 0.95 6.02 -51.93 -0.31 0.64 16 36 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 37 H 0.07 1.24 6.45 -51.93 -0.33 0.90 16 38 H 0.10 1.33 8.03 -51.93 -0.42 0.91 16 39 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.11 1.59 7.35 -51.93 -0.38 1.21 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -28.83 341.93 -10.57 -39.40 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.05 Total: 2.32 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.39 Total: -25.26 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.26 Total: -38.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.83 -10.57 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714822737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.437 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds