Wall clock time and date at job start Mon Mar 30 2020 07:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 N 1.46902 * 109.47372 * 119.99724 * 2 1 3 5 5 C 1.46899 * 111.00182 * 169.17448 * 4 2 1 6 6 C 1.50703 * 109.47130 * 293.95381 * 5 4 2 7 7 H 1.08008 * 120.00036 * 359.72992 * 6 5 4 8 8 C 1.37877 * 119.99993 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46850 * 90.00252 * 10 8 6 12 12 H 1.48497 * 109.47331 * 210.00315 * 10 8 6 13 13 H 1.48499 * 109.47104 * 330.00456 * 10 8 6 14 14 C 1.46896 * 111.00242 * 293.13433 * 4 2 1 15 15 C 1.53000 * 109.47635 * 160.12667 * 14 4 2 16 16 C 1.52991 * 109.47454 * 185.28364 * 15 14 4 17 17 H 1.09000 * 115.55327 * 29.32971 * 16 15 14 18 18 C 1.52998 * 117.49976 * 243.61873 * 16 15 14 19 19 C 1.52992 * 60.00143 * 252.50955 * 18 16 15 20 20 H 1.09003 * 117.50265 * 107.48976 * 19 18 16 21 21 C 1.53006 * 117.51894 * 252.51518 * 19 18 16 22 22 C 1.53001 * 117.49945 * 197.24921 * 21 19 18 23 23 C 1.53005 * 117.49418 * 128.62744 * 21 19 18 24 24 H 1.09000 * 109.46936 * 300.52289 * 1 2 3 25 25 H 1.08999 * 109.46955 * 60.52717 * 1 2 3 26 26 H 1.08996 * 109.46734 * 180.52662 * 1 2 3 27 27 H 1.08994 * 109.47353 * 239.99924 * 2 1 3 28 28 H 1.09002 * 109.47129 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47421 * 300.00209 * 3 2 1 30 30 H 1.09008 * 109.47058 * 60.00398 * 3 2 1 31 31 H 1.09004 * 109.47156 * 173.96221 * 5 4 2 32 32 H 1.08994 * 109.47257 * 53.95642 * 5 4 2 33 33 H 0.96996 * 120.00052 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46790 * 280.12414 * 14 4 2 35 35 H 1.08996 * 109.47461 * 40.12338 * 14 4 2 36 36 H 1.09000 * 109.46646 * 305.28492 * 15 14 4 37 37 H 1.09000 * 109.47308 * 65.27530 * 15 14 4 38 38 H 1.08996 * 117.49987 * 0.02562 * 18 16 15 39 39 H 1.09001 * 117.50117 * 145.02085 * 18 16 15 40 40 H 1.08998 * 115.54834 * 342.96398 * 21 19 18 41 41 H 1.09005 * 117.49722 * 0.02562 * 22 21 19 42 42 H 1.08992 * 117.49670 * 145.02314 * 22 21 19 43 43 H 1.08999 * 117.49577 * 214.97991 * 23 21 19 44 44 H 1.09000 * 117.50223 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4652 -0.9392 1.1117 6 6 3.7415 -1.9146 -0.0033 7 1 2.9245 -2.3150 -0.5855 8 6 5.0367 -2.2999 -0.2771 9 7 6.0310 -1.8166 0.4351 10 14 5.3792 -3.5085 -1.6597 11 1 5.5967 -2.7635 -2.9258 12 1 6.5935 -4.2997 -1.3360 13 1 4.2197 -4.4230 -1.8163 14 6 1.6873 0.0618 2.4154 15 6 1.7490 -0.8706 3.6269 16 6 1.2759 -0.1197 4.8731 17 1 0.5480 0.6722 4.6968 18 6 2.2906 0.0907 5.9987 19 6 1.1521 -0.9163 6.1734 20 1 1.4076 -1.9755 6.1411 21 6 0.0159 -0.5405 7.1268 22 6 -0.8960 -1.6667 7.6178 23 6 -1.4156 -0.6513 6.5980 24 1 -0.3633 0.5219 0.8853 25 1 -0.3633 0.5056 -0.8947 26 1 -0.3633 -1.0276 0.0094 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.8208 -1.3550 2.0545 32 1 3.9823 -0.0011 0.9102 33 1 6.9422 -2.0873 0.2423 34 1 2.4020 0.8744 2.5456 35 1 0.6820 0.4731 2.3244 36 1 1.1040 -1.7324 3.4552 37 1 2.7749 -1.2083 3.7736 38 1 3.2952 -0.3055 5.8513 39 1 2.2304 1.0212 6.5632 40 1 0.2343 0.2701 7.8220 41 1 -0.6862 -2.6754 7.2620 42 1 -1.2775 -1.5973 8.6364 43 1 -2.1390 0.0861 6.9459 44 1 -1.5480 -0.9923 5.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714822739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:04 Heat of formation + Delta-G solvation = 34.180469 kcal Electronic energy + Delta-G solvation = -18805.150165 eV Core-core repulsion = 16144.443948 eV Total energy + Delta-G solvation = -2660.706217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.80250 -37.66039 -35.45310 -32.74609 -31.58827 -29.31358 -26.58272 -26.19188 -23.72759 -22.84052 -22.46894 -22.01450 -20.35441 -19.70322 -18.44440 -16.20698 -15.77651 -15.37010 -15.05374 -14.60284 -14.11170 -13.96429 -13.58738 -13.06759 -12.77249 -12.73063 -12.07141 -11.99496 -11.67620 -11.46948 -11.45588 -11.30335 -11.12046 -10.93813 -10.79397 -10.67851 -10.65348 -10.61229 -10.45951 -10.22400 -9.93044 -9.66331 -9.53134 -9.24404 -9.03712 -8.38673 -7.09858 -5.98531 -3.98889 3.33599 3.39967 3.44385 3.59503 4.05031 4.45175 4.54033 4.83253 4.86320 4.96906 5.17554 5.21273 5.36784 5.40124 5.48436 5.55993 5.59124 5.65976 5.80777 5.81484 5.85686 5.96489 6.00865 6.05543 6.08832 6.14477 6.19646 6.23768 6.31651 6.33750 6.36532 6.45300 6.58771 6.69433 6.84986 6.86424 6.96461 7.41448 7.49658 7.87061 8.19375 8.32658 8.64811 9.09299 9.64946 11.12298 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.004816 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.819107 B = 5811.996246 C = 6441.630411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 C -0.180 4.180 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.059 3.941 15 C -0.083 4.083 16 C -0.133 4.133 17 H 0.099 0.901 18 C -0.174 4.174 19 C -0.128 4.128 20 H 0.104 0.896 21 C -0.121 4.121 22 C -0.179 4.179 23 C -0.178 4.178 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.030 0.970 32 H -0.006 1.006 33 H 0.260 0.740 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 4.570 9.774 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.239 4.239 4 N -0.255 5.255 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.070 4.070 15 C -0.121 4.121 16 C -0.152 4.152 17 H 0.118 0.882 18 C -0.211 4.211 19 C -0.146 4.146 20 H 0.122 0.878 21 C -0.139 4.139 22 C -0.216 4.216 23 C -0.215 4.215 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.011 0.989 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.877 4.090 9.814 15.940 hybrid contribution 0.829 0.206 -0.696 1.102 sum -11.048 4.296 9.118 14.955 Atomic orbital electron populations 1.21869 0.96294 1.01536 1.00098 1.21570 0.93577 0.91915 0.95764 1.22434 1.02358 0.98671 1.00404 1.62295 1.19201 1.44341 0.99663 1.19758 0.80716 0.95408 0.97552 1.21194 0.92110 1.25157 1.15839 0.91997 1.24969 0.96247 0.96664 0.96690 1.69957 0.99286 1.44563 1.40120 0.86559 0.77749 0.81247 0.82234 1.20819 1.21332 1.19807 1.21988 0.99240 0.94694 0.91065 1.21156 1.01592 0.97990 0.91331 1.22449 1.01468 1.01492 0.89754 0.88243 1.23144 0.95022 1.00086 1.02859 1.21842 0.97209 0.97357 0.98154 0.87784 1.21740 0.90431 1.00747 1.00945 1.22964 1.04289 0.95387 0.98989 1.22963 0.96504 1.02411 0.99596 0.93507 0.93482 0.92395 0.89145 0.92039 0.93486 0.93589 0.95225 0.98865 0.93046 0.95757 0.92236 0.91235 0.91540 0.88633 0.89333 0.88096 0.88740 0.89161 0.89203 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.17 37.16 0.34 -1.88 16 2 C 0.08 1.56 2.78 -67.71 -0.19 1.37 16 3 C -0.18 -3.21 8.52 37.16 0.32 -2.90 16 4 N -0.53 -11.31 4.37 -228.09 -1.00 -12.31 16 5 C 0.19 4.93 4.43 -4.98 -0.02 4.91 16 6 C -0.50 -14.14 8.35 -34.44 -0.29 -14.43 16 7 H 0.06 1.73 7.20 -52.48 -0.38 1.35 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.06 1.06 3.52 -3.83 -0.01 1.04 16 15 C -0.08 -1.39 5.53 -26.74 -0.15 -1.54 16 16 C -0.13 -1.82 5.38 -90.63 -0.49 -2.30 16 17 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 18 C -0.17 -2.23 9.90 -26.74 -0.26 -2.49 16 19 C -0.13 -1.58 5.59 -90.62 -0.51 -2.08 16 20 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 21 C -0.12 -1.28 5.87 -90.61 -0.53 -1.81 16 22 C -0.18 -1.72 10.25 -26.73 -0.27 -2.00 16 23 C -0.18 -1.77 10.18 -26.73 -0.27 -2.04 16 24 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.96 6.64 -51.93 -0.34 1.61 16 28 H 0.06 1.25 6.61 -51.93 -0.34 0.91 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.76 6.74 -51.92 -0.35 0.41 16 31 H 0.03 0.82 6.73 -51.93 -0.35 0.47 16 32 H -0.01 -0.18 6.44 -51.93 -0.33 -0.51 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.02 0.46 7.33 -51.93 -0.38 0.08 16 35 H 0.06 0.97 5.89 -51.93 -0.31 0.66 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.26 6.70 -51.93 -0.35 0.91 16 38 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -28.82 343.99 -10.62 -39.44 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.08 Total: 1.69 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.44 Total: -24.67 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.26 Total: -38.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.82 -10.62 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714822739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.619 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds