Wall clock time and date at job start Mon Mar 30 2020 07:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46972 * 2 1 4 4 N 1.46902 * 109.47372 * 119.99724 * 2 1 3 5 5 C 1.46899 * 111.00182 * 169.17448 * 4 2 1 6 6 C 1.50703 * 109.47130 * 293.95381 * 5 4 2 7 7 H 1.08008 * 120.00036 * 359.72992 * 6 5 4 8 8 C 1.37877 * 119.99993 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99934 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46850 * 90.00252 * 10 8 6 12 12 H 1.48497 * 109.47331 * 210.00315 * 10 8 6 13 13 H 1.48499 * 109.47104 * 330.00456 * 10 8 6 14 14 C 1.46896 * 111.00242 * 293.13433 * 4 2 1 15 15 C 1.53000 * 109.47635 * 160.12667 * 14 4 2 16 16 C 1.52991 * 109.47454 * 185.28364 * 15 14 4 17 17 H 1.09000 * 115.55327 * 29.32971 * 16 15 14 18 18 C 1.52998 * 117.49976 * 243.61873 * 16 15 14 19 19 C 1.52992 * 60.00143 * 252.50955 * 18 16 15 20 20 H 1.09003 * 117.50265 * 107.48976 * 19 18 16 21 21 C 1.53006 * 117.51894 * 252.51518 * 19 18 16 22 22 C 1.53001 * 117.49945 * 197.24921 * 21 19 18 23 23 C 1.53005 * 117.49418 * 128.62744 * 21 19 18 24 24 H 1.09000 * 109.46936 * 300.52289 * 1 2 3 25 25 H 1.08999 * 109.46955 * 60.52717 * 1 2 3 26 26 H 1.08996 * 109.46734 * 180.52662 * 1 2 3 27 27 H 1.08994 * 109.47353 * 239.99924 * 2 1 3 28 28 H 1.09002 * 109.47129 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47421 * 300.00209 * 3 2 1 30 30 H 1.09008 * 109.47058 * 60.00398 * 3 2 1 31 31 H 1.09004 * 109.47156 * 173.96221 * 5 4 2 32 32 H 1.08994 * 109.47257 * 53.95642 * 5 4 2 33 33 H 0.96996 * 120.00052 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46790 * 280.12414 * 14 4 2 35 35 H 1.08996 * 109.47461 * 40.12338 * 14 4 2 36 36 H 1.09000 * 109.46646 * 305.28492 * 15 14 4 37 37 H 1.09000 * 109.47308 * 65.27530 * 15 14 4 38 38 H 1.08996 * 117.49987 * 0.02562 * 18 16 15 39 39 H 1.09001 * 117.50117 * 145.02085 * 18 16 15 40 40 H 1.08998 * 115.54834 * 342.96398 * 21 19 18 41 41 H 1.09005 * 117.49722 * 0.02562 * 22 21 19 42 42 H 1.08992 * 117.49670 * 145.02314 * 22 21 19 43 43 H 1.08999 * 117.49577 * 214.97991 * 23 21 19 44 44 H 1.09000 * 117.50223 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4652 -0.9392 1.1117 6 6 3.7415 -1.9146 -0.0033 7 1 2.9245 -2.3150 -0.5855 8 6 5.0367 -2.2999 -0.2771 9 7 6.0310 -1.8166 0.4351 10 14 5.3792 -3.5085 -1.6597 11 1 5.5967 -2.7635 -2.9258 12 1 6.5935 -4.2997 -1.3360 13 1 4.2197 -4.4230 -1.8163 14 6 1.6873 0.0618 2.4154 15 6 1.7490 -0.8706 3.6269 16 6 1.2759 -0.1197 4.8731 17 1 0.5480 0.6722 4.6968 18 6 2.2906 0.0907 5.9987 19 6 1.1521 -0.9163 6.1734 20 1 1.4076 -1.9755 6.1411 21 6 0.0159 -0.5405 7.1268 22 6 -0.8960 -1.6667 7.6178 23 6 -1.4156 -0.6513 6.5980 24 1 -0.3633 0.5219 0.8853 25 1 -0.3633 0.5056 -0.8947 26 1 -0.3633 -1.0276 0.0094 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.8208 -1.3550 2.0545 32 1 3.9823 -0.0011 0.9102 33 1 6.9422 -2.0873 0.2423 34 1 2.4020 0.8744 2.5456 35 1 0.6820 0.4731 2.3244 36 1 1.1040 -1.7324 3.4552 37 1 2.7749 -1.2083 3.7736 38 1 3.2952 -0.3055 5.8513 39 1 2.2304 1.0212 6.5632 40 1 0.2343 0.2701 7.8220 41 1 -0.6862 -2.6754 7.2620 42 1 -1.2775 -1.5973 8.6364 43 1 -2.1390 0.0861 6.9459 44 1 -1.5480 -0.9923 5.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714822739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:03 Heat of formation + Delta-G solvation = 19.625055 kcal Electronic energy + Delta-G solvation = -18805.781335 eV Core-core repulsion = 16144.443948 eV Total energy + Delta-G solvation = -2661.337387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96143 -39.10128 -36.42690 -34.88213 -33.05905 -31.04464 -28.10734 -27.95443 -24.91976 -24.32020 -23.75111 -23.20970 -21.49594 -20.76308 -20.02351 -18.35222 -16.99931 -16.65419 -16.50046 -15.96800 -15.83930 -15.33491 -14.87060 -14.64996 -14.29877 -14.00745 -13.81212 -13.35881 -13.17493 -12.79917 -12.76105 -12.64879 -12.50619 -12.44842 -12.28336 -12.21086 -12.01187 -11.94788 -11.73178 -11.60955 -11.41349 -11.26393 -11.06723 -10.66832 -10.56760 -10.24577 -8.87197 -8.18556 -6.27581 1.39494 1.40831 1.52389 2.40582 2.67955 3.11796 3.13815 3.30521 3.71392 3.88446 3.98515 4.12832 4.19021 4.22127 4.31061 4.33272 4.43597 4.51071 4.58407 4.61800 4.68405 4.81771 4.83464 4.84532 4.88494 4.96736 5.00575 5.03098 5.07568 5.17141 5.24062 5.28844 5.29769 5.31639 5.32598 5.37689 5.47099 5.52465 5.57679 5.70307 6.12455 6.47852 6.76269 6.90389 7.41783 8.92395 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.004816 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.819107 B = 5811.996246 C = 6441.630411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 C -0.171 4.171 4 N -0.538 5.538 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.063 3.937 15 C -0.074 4.074 16 C -0.137 4.137 17 H 0.115 0.885 18 C -0.175 4.175 19 C -0.117 4.117 20 H 0.093 0.907 21 C -0.129 4.129 22 C -0.176 4.176 23 C -0.175 4.175 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.000 1.000 32 H -0.035 1.035 33 H 0.263 0.737 34 H 0.013 0.987 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 5.032 9.902 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 C -0.229 4.229 4 N -0.262 5.262 5 C 0.083 3.917 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.065 4.065 15 C -0.112 4.112 16 C -0.156 4.156 17 H 0.133 0.867 18 C -0.212 4.212 19 C -0.135 4.135 20 H 0.111 0.889 21 C -0.147 4.147 22 C -0.213 4.213 23 C -0.212 4.212 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.018 0.982 32 H -0.018 1.018 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.088 4.557 9.941 17.835 hybrid contribution 1.503 0.075 -0.721 1.669 sum -12.585 4.632 9.221 16.274 Atomic orbital electron populations 1.21764 0.92789 1.01909 1.02139 1.21672 0.96235 0.92069 0.93594 1.22326 0.99949 0.98194 1.02458 1.62243 1.15905 1.46173 1.01873 1.19342 0.83488 0.93438 0.95399 1.21493 0.92363 1.25553 1.16369 0.92204 1.25871 0.95977 0.98487 0.99248 1.70090 0.99738 1.45957 1.41846 0.85451 0.77744 0.78837 0.79017 1.19832 1.20816 1.18963 1.22051 1.00189 0.94261 0.89997 1.21014 0.99570 0.97984 0.92672 1.22305 1.02392 1.02123 0.88751 0.86744 1.23180 0.94311 1.01149 1.02570 1.21837 0.97592 0.96618 0.97437 0.88933 1.21740 0.90038 1.01826 1.01099 1.23047 1.03488 0.94861 0.99890 1.23010 0.96107 1.02784 0.99288 0.91911 0.90943 0.92879 0.92098 0.95631 0.90885 0.91991 0.98200 1.01765 0.92852 0.96878 0.89394 0.91946 0.94811 0.90230 0.87357 0.86909 0.89297 0.87442 0.87550 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.17 71.98 0.66 -3.08 16 2 C 0.07 2.80 2.78 44.92 0.12 2.92 16 3 C -0.17 -6.00 8.52 71.98 0.61 -5.38 16 4 N -0.54 -23.44 4.37 -875.54 -3.82 -27.26 16 5 C 0.21 11.42 4.43 85.56 0.38 11.80 16 6 C -0.52 -30.09 8.35 25.60 0.21 -29.88 16 7 H 0.06 3.42 7.20 -2.91 -0.02 3.40 16 8 C 0.00 0.10 5.46 84.66 0.46 0.57 16 9 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 10 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.06 2.27 3.52 86.30 0.30 2.58 16 15 C -0.07 -2.56 5.53 30.59 0.17 -2.39 16 16 C -0.14 -3.66 5.38 -10.80 -0.06 -3.72 16 17 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 18 C -0.18 -4.42 9.90 30.59 0.30 -4.11 16 19 C -0.12 -2.80 5.59 -10.79 -0.06 -2.86 16 20 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 21 C -0.13 -2.47 5.87 -10.79 -0.06 -2.53 16 22 C -0.18 -3.00 10.25 30.60 0.31 -2.69 16 23 C -0.17 -3.05 10.18 30.60 0.31 -2.74 16 24 H 0.06 1.62 6.30 -2.39 -0.02 1.61 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 2.68 6.64 -2.39 -0.02 2.66 16 28 H 0.02 1.05 6.61 -2.39 -0.02 1.04 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.95 6.74 -2.38 -0.02 1.94 16 31 H 0.00 0.00 6.73 -2.38 -0.02 -0.02 16 32 H -0.04 -2.09 6.44 -2.39 -0.02 -2.10 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.01 0.50 7.33 -2.39 -0.02 0.48 16 35 H 0.09 2.68 5.89 -2.39 -0.01 2.67 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.03 1.36 6.70 -2.39 -0.02 1.34 16 38 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 39 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -64.18 343.99 3.09 -61.09 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.94 Total: 17.71 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.67 Total: -41.52 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -3.54 Total: -84.50 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.18 3.09 -61.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714822739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.711 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds