Wall clock time and date at job start Mon Mar 30 2020 07:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47457 * 2 1 4 4 H 1.09002 * 109.47182 * 52.70272 * 3 2 1 5 5 C 1.50697 * 109.47453 * 292.69977 * 3 2 1 6 6 H 1.07997 * 120.00166 * 245.97130 * 5 3 2 7 7 C 1.37881 * 119.99687 * 65.96276 * 5 3 2 8 8 N 1.31511 * 120.00046 * 23.92405 * 7 5 3 9 9 Si 1.86804 * 119.99750 * 203.92269 * 7 5 3 10 10 H 1.48500 * 109.47020 * 60.00171 * 9 7 5 11 11 H 1.48502 * 109.47147 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47238 * 300.00390 * 9 7 5 13 13 N 1.46903 * 109.47026 * 172.70138 * 3 2 1 14 14 C 1.46896 * 111.00483 * 53.77877 * 13 3 2 15 15 C 1.46897 * 110.99833 * 289.82169 * 13 3 2 16 16 C 1.53003 * 109.47030 * 196.18107 * 15 13 3 17 17 H 1.08999 * 115.54889 * 29.33492 * 16 15 13 18 18 C 1.53005 * 117.49863 * 243.62242 * 16 15 13 19 19 C 1.53000 * 59.99983 * 252.51045 * 18 16 15 20 20 H 1.09000 * 117.50433 * 252.50851 * 19 18 16 21 21 C 1.53009 * 117.49874 * 107.48948 * 19 18 16 22 22 H 1.09002 * 115.54764 * 16.96035 * 21 19 18 23 23 C 1.52995 * 117.49729 * 162.63190 * 21 19 18 24 24 C 1.52997 * 117.49645 * 231.29173 * 21 19 18 25 25 H 1.08994 * 117.50189 * 359.97438 * 24 21 19 26 26 C 1.53001 * 117.49383 * 145.02017 * 24 21 19 27 27 H 1.08997 * 109.47492 * 186.43628 * 1 2 3 28 28 H 1.09010 * 109.46728 * 306.43676 * 1 2 3 29 29 H 1.09001 * 109.46900 * 66.42615 * 1 2 3 30 30 H 1.08999 * 109.46572 * 239.99640 * 2 1 3 31 31 H 1.08999 * 109.46851 * 120.00284 * 2 1 3 32 32 H 0.97000 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46880 * 59.99755 * 14 13 3 34 34 H 1.09001 * 109.46596 * 300.00280 * 14 13 3 35 35 H 1.08994 * 109.47768 * 180.02562 * 14 13 3 36 36 H 1.09000 * 109.47613 * 316.17944 * 15 13 3 37 37 H 1.09002 * 109.47195 * 76.18134 * 15 13 3 38 38 H 1.08993 * 117.49655 * 0.02562 * 18 16 15 39 39 H 1.08996 * 117.49593 * 145.02579 * 18 16 15 40 40 H 1.09003 * 117.49154 * 214.98058 * 23 21 19 41 41 H 1.08999 * 117.50073 * 359.97380 * 23 21 19 42 42 H 1.09001 * 109.47485 * 60.00071 * 26 24 21 43 43 H 1.09008 * 109.46651 * 179.97438 * 26 24 21 44 44 H 1.08995 * 109.47460 * 299.99217 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5741 1.9926 0.8175 5 6 1.6906 2.0989 -1.3107 6 1 2.4743 2.3935 -1.9929 7 6 0.3704 2.3231 -1.6390 8 7 -0.5359 2.4188 -0.6908 9 14 -0.1309 2.4909 -3.4307 10 1 0.2133 1.2439 -4.1599 11 1 -1.5949 2.7251 -3.5152 12 1 0.5902 3.6365 -4.0413 13 7 3.4985 1.4460 0.1760 14 6 4.1516 0.5909 -0.8240 15 6 3.8654 1.0374 1.5384 16 6 5.3178 1.4307 1.8152 17 1 5.6772 2.3093 1.2794 18 6 6.3182 0.3023 2.0742 19 6 5.8566 1.1952 3.2277 20 1 6.5707 1.9187 3.6211 21 6 4.9017 0.5845 4.2554 22 1 4.8467 -0.5042 4.2572 23 6 4.7575 1.3014 5.5992 24 6 3.6206 1.3571 4.5758 25 1 3.4582 2.3006 4.0549 26 6 2.3605 0.5424 4.8749 27 1 -0.3634 -1.0211 0.1152 28 1 -0.3633 0.6104 0.8269 29 1 -0.3633 0.4110 -0.9419 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -1.4646 2.5769 -0.9218 33 1 3.9193 0.9582 -1.8237 34 1 3.7895 -0.4319 -0.7195 35 1 5.2305 0.6113 -0.6707 36 1 3.2116 1.5341 2.2553 37 1 3.7567 -0.0429 1.6354 38 1 5.9417 -0.7201 2.0470 39 1 7.3360 0.4384 1.7087 40 1 4.6074 0.6844 6.4852 41 1 5.3433 2.2080 5.7514 42 1 2.5369 -0.0948 5.7415 43 1 1.5318 1.2189 5.0845 44 1 2.1150 -0.0770 4.0124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716599541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:07 Heat of formation + Delta-G solvation = 54.148260 kcal Electronic energy + Delta-G solvation = -19633.046731 eV Core-core repulsion = 16973.206383 eV Total energy + Delta-G solvation = -2659.840348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.11887 -37.15269 -35.41828 -33.05875 -30.41745 -28.59758 -27.21994 -26.51788 -24.00533 -23.29442 -21.99261 -21.09036 -20.57124 -19.26764 -18.63160 -16.18232 -15.49712 -15.14028 -14.75925 -14.19620 -13.96234 -13.66535 -13.42828 -13.10232 -12.90188 -12.52329 -12.29449 -12.00889 -11.76644 -11.49322 -11.20665 -11.10221 -10.93974 -10.79915 -10.68744 -10.56371 -10.46325 -10.28757 -10.18229 -10.07949 -9.76608 -9.55072 -9.27206 -9.13228 -9.05397 -7.82354 -7.04503 -6.05685 -3.89636 3.34106 3.39698 3.44028 3.74207 4.12104 4.45242 4.67728 4.87628 4.98658 5.03818 5.23442 5.27167 5.44761 5.47470 5.50015 5.66995 5.82509 5.86672 5.89685 5.97472 6.01572 6.18450 6.24126 6.27942 6.29996 6.33100 6.36706 6.43763 6.49528 6.53088 6.54961 6.72986 6.78062 6.84558 7.07560 7.31027 7.38353 7.64146 7.86881 7.99135 8.17074 8.37185 8.69573 9.07739 9.63390 11.02130 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.005976 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.675108 B = 4684.177364 C = 5245.109574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.135 4.135 3 C 0.212 3.788 4 H 0.048 0.952 5 C -0.509 4.509 6 H 0.062 0.938 7 C 0.072 3.928 8 N -0.870 5.870 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.533 5.533 14 C 0.036 3.964 15 C 0.086 3.914 16 C -0.124 4.124 17 H 0.108 0.892 18 C -0.179 4.179 19 C -0.127 4.127 20 H 0.100 0.900 21 C -0.116 4.116 22 H 0.100 0.900 23 C -0.178 4.178 24 C -0.144 4.144 25 H 0.109 0.891 26 C -0.123 4.123 27 H -0.002 1.002 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.014 0.986 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.022 0.978 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 -4.314 8.994 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.174 4.174 3 C 0.106 3.894 4 H 0.066 0.934 5 C -0.547 4.547 6 H 0.080 0.920 7 C -0.131 4.131 8 N -0.507 5.507 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.255 5.255 14 C -0.112 4.112 15 C -0.042 4.042 16 C -0.142 4.142 17 H 0.126 0.874 18 C -0.216 4.216 19 C -0.146 4.146 20 H 0.118 0.882 21 C -0.134 4.134 22 H 0.118 0.882 23 C -0.215 4.215 24 C -0.162 4.162 25 H 0.127 0.873 26 C -0.180 4.180 27 H 0.017 0.983 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.805 -3.784 8.957 13.118 hybrid contribution -0.568 -0.866 -0.871 1.353 sum 8.237 -4.649 8.086 12.444 Atomic orbital electron populations 1.21910 0.95358 0.95907 1.04885 1.22248 0.97288 1.00585 0.97292 1.19446 0.80623 0.90946 0.98427 0.93435 1.20919 0.91609 1.39869 1.02331 0.91976 1.24765 0.96788 0.94886 0.96627 1.70229 1.02348 1.46573 1.31581 0.86966 0.77269 0.78663 0.87057 1.20316 1.21434 1.20264 1.62254 1.11813 1.50897 1.00562 1.22213 0.96919 0.94512 0.97594 1.21651 0.92926 0.96998 0.92625 1.22501 0.95508 0.99640 0.96600 0.87389 1.23084 0.99491 0.96219 1.02836 1.21796 1.00989 1.02477 0.89294 0.88183 1.21741 0.98333 0.97655 0.95671 0.88235 1.23146 1.03081 1.02465 0.92817 1.22426 0.89808 1.01500 1.02484 0.87315 1.21368 0.96081 0.99400 1.01164 0.98326 0.92601 0.90382 0.94065 0.96536 0.92979 0.91325 0.96794 0.93845 0.90577 0.95961 0.89313 0.89381 0.89257 0.89118 0.93078 0.92017 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.25 37.16 0.31 -2.61 16 2 C -0.13 -3.12 4.48 -26.74 -0.12 -3.24 16 3 C 0.21 5.22 1.91 -68.87 -0.13 5.08 16 4 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 5 C -0.51 -13.73 7.91 -34.44 -0.27 -14.00 16 6 H 0.06 1.71 7.01 -52.49 -0.37 1.34 16 7 C 0.07 1.92 3.52 -17.82 -0.06 1.86 16 8 N -0.87 -23.87 10.09 55.43 0.56 -23.31 16 9 Si 0.87 20.85 29.60 -169.99 -5.03 15.82 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -11.42 4.65 -236.29 -1.10 -12.52 16 14 C 0.04 0.72 8.65 60.06 0.52 1.23 16 15 C 0.09 1.57 3.64 -3.82 -0.01 1.56 16 16 C -0.12 -1.90 5.06 -90.61 -0.46 -2.36 16 17 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 18 C -0.18 -2.34 9.90 -26.73 -0.26 -2.61 16 19 C -0.13 -1.65 5.87 -90.61 -0.53 -2.18 16 20 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 21 C -0.12 -1.45 4.97 -90.62 -0.45 -1.90 16 22 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 23 C -0.18 -1.99 9.90 -26.70 -0.26 -2.25 16 24 C -0.14 -1.88 4.32 -90.58 -0.39 -2.27 16 25 H 0.11 1.58 7.31 -51.93 -0.38 1.20 16 26 C -0.12 -1.56 10.19 37.16 0.38 -1.18 16 27 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.05 1.38 7.53 -51.92 -0.39 0.99 16 29 H 0.08 2.01 4.97 -51.93 -0.26 1.75 16 30 H 0.04 0.96 6.77 -51.93 -0.35 0.61 16 31 H 0.02 0.35 6.79 -51.93 -0.35 0.00 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.07 1.44 6.76 -51.93 -0.35 1.09 16 34 H 0.01 0.27 6.38 -51.93 -0.33 -0.06 16 35 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 36 H 0.08 1.44 5.30 -51.93 -0.28 1.17 16 37 H 0.02 0.41 6.87 -51.93 -0.36 0.06 16 38 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 0.89 8.05 -51.93 -0.42 0.48 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -26.72 332.42 -10.28 -37.00 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.96 Total: 2.86 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -1.76 Total: -24.87 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.54 Total: -35.83 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.72 -10.28 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.151 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds