Wall clock time and date at job start Mon Mar 30 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47457 * 2 1 4 4 H 1.09002 * 109.47182 * 52.70272 * 3 2 1 5 5 C 1.50697 * 109.47453 * 292.69977 * 3 2 1 6 6 H 1.07997 * 120.00166 * 245.97130 * 5 3 2 7 7 C 1.37881 * 119.99687 * 65.96276 * 5 3 2 8 8 N 1.31511 * 120.00046 * 23.92405 * 7 5 3 9 9 Si 1.86804 * 119.99750 * 203.92269 * 7 5 3 10 10 H 1.48500 * 109.47020 * 60.00171 * 9 7 5 11 11 H 1.48502 * 109.47147 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47238 * 300.00390 * 9 7 5 13 13 N 1.46903 * 109.47026 * 172.70138 * 3 2 1 14 14 C 1.46896 * 111.00483 * 53.77877 * 13 3 2 15 15 C 1.46897 * 110.99833 * 289.82169 * 13 3 2 16 16 C 1.53003 * 109.47030 * 196.18107 * 15 13 3 17 17 H 1.08999 * 115.54889 * 29.33492 * 16 15 13 18 18 C 1.53005 * 117.49863 * 243.62242 * 16 15 13 19 19 C 1.53000 * 59.99983 * 252.51045 * 18 16 15 20 20 H 1.09000 * 117.50433 * 252.50851 * 19 18 16 21 21 C 1.53009 * 117.49874 * 107.48948 * 19 18 16 22 22 H 1.09002 * 115.54764 * 16.96035 * 21 19 18 23 23 C 1.52995 * 117.49729 * 162.63190 * 21 19 18 24 24 C 1.52997 * 117.49645 * 231.29173 * 21 19 18 25 25 H 1.08994 * 117.50189 * 359.97438 * 24 21 19 26 26 C 1.53001 * 117.49383 * 145.02017 * 24 21 19 27 27 H 1.08997 * 109.47492 * 186.43628 * 1 2 3 28 28 H 1.09010 * 109.46728 * 306.43676 * 1 2 3 29 29 H 1.09001 * 109.46900 * 66.42615 * 1 2 3 30 30 H 1.08999 * 109.46572 * 239.99640 * 2 1 3 31 31 H 1.08999 * 109.46851 * 120.00284 * 2 1 3 32 32 H 0.97000 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46880 * 59.99755 * 14 13 3 34 34 H 1.09001 * 109.46596 * 300.00280 * 14 13 3 35 35 H 1.08994 * 109.47768 * 180.02562 * 14 13 3 36 36 H 1.09000 * 109.47613 * 316.17944 * 15 13 3 37 37 H 1.09002 * 109.47195 * 76.18134 * 15 13 3 38 38 H 1.08993 * 117.49655 * 0.02562 * 18 16 15 39 39 H 1.08996 * 117.49593 * 145.02579 * 18 16 15 40 40 H 1.09003 * 117.49154 * 214.98058 * 23 21 19 41 41 H 1.08999 * 117.50073 * 359.97380 * 23 21 19 42 42 H 1.09001 * 109.47485 * 60.00071 * 26 24 21 43 43 H 1.09008 * 109.46651 * 179.97438 * 26 24 21 44 44 H 1.08995 * 109.47460 * 299.99217 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5741 1.9926 0.8175 5 6 1.6906 2.0989 -1.3107 6 1 2.4743 2.3935 -1.9929 7 6 0.3704 2.3231 -1.6390 8 7 -0.5359 2.4188 -0.6908 9 14 -0.1309 2.4909 -3.4307 10 1 0.2133 1.2439 -4.1599 11 1 -1.5949 2.7251 -3.5152 12 1 0.5902 3.6365 -4.0413 13 7 3.4985 1.4460 0.1760 14 6 4.1516 0.5909 -0.8240 15 6 3.8654 1.0374 1.5384 16 6 5.3178 1.4307 1.8152 17 1 5.6772 2.3093 1.2794 18 6 6.3182 0.3023 2.0742 19 6 5.8566 1.1952 3.2277 20 1 6.5707 1.9187 3.6211 21 6 4.9017 0.5845 4.2554 22 1 4.8467 -0.5042 4.2572 23 6 4.7575 1.3014 5.5992 24 6 3.6206 1.3571 4.5758 25 1 3.4582 2.3006 4.0549 26 6 2.3605 0.5424 4.8749 27 1 -0.3634 -1.0211 0.1152 28 1 -0.3633 0.6104 0.8269 29 1 -0.3633 0.4110 -0.9419 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 -1.4646 2.5769 -0.9218 33 1 3.9193 0.9582 -1.8237 34 1 3.7895 -0.4319 -0.7195 35 1 5.2305 0.6113 -0.6707 36 1 3.2116 1.5341 2.2553 37 1 3.7567 -0.0429 1.6354 38 1 5.9417 -0.7201 2.0470 39 1 7.3360 0.4384 1.7087 40 1 4.6074 0.6844 6.4852 41 1 5.3433 2.2080 5.7514 42 1 2.5369 -0.0948 5.7415 43 1 1.5318 1.2189 5.0845 44 1 2.1150 -0.0770 4.0124 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716599541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:06 Heat of formation + Delta-G solvation = 41.436237 kcal Electronic energy + Delta-G solvation = -19633.597966 eV Core-core repulsion = 16973.206383 eV Total energy + Delta-G solvation = -2660.391583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30973 -38.74122 -36.63725 -34.91200 -32.35788 -29.73386 -28.89262 -28.18563 -25.79282 -24.32362 -23.79535 -22.24850 -21.70446 -20.87056 -19.94127 -18.19630 -16.91712 -16.61399 -16.15457 -15.72860 -15.55653 -15.24854 -14.81160 -14.60210 -14.23468 -14.13616 -13.68530 -13.52050 -13.00538 -12.95324 -12.79389 -12.62671 -12.45432 -12.31653 -12.22452 -12.10862 -12.10007 -11.95750 -11.75900 -11.46743 -11.36160 -11.29001 -11.07702 -10.39600 -10.17008 -9.89558 -8.75714 -8.12684 -6.02760 1.42334 1.45564 1.52013 2.46003 2.70199 3.08088 3.13918 3.43070 3.68498 3.95846 3.97718 4.19083 4.24033 4.40683 4.41862 4.45666 4.52443 4.58503 4.65634 4.70011 4.79005 4.83139 4.90390 4.92265 4.95550 4.96823 5.00104 5.05294 5.13379 5.21296 5.23370 5.33411 5.35073 5.37229 5.43110 5.44833 5.48528 5.74143 5.83062 5.96142 6.24242 6.57140 6.85481 6.99279 7.53426 8.94344 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.005976 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.675108 B = 4684.177364 C = 5245.109574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.125 4.125 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.529 4.529 6 H 0.051 0.949 7 C 0.036 3.964 8 N -0.890 5.890 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.548 5.548 14 C 0.044 3.956 15 C 0.098 3.902 16 C -0.146 4.146 17 H 0.098 0.902 18 C -0.162 4.162 19 C -0.113 4.113 20 H 0.115 0.885 21 C -0.122 4.122 22 H 0.103 0.897 23 C -0.155 4.155 24 C -0.163 4.163 25 H 0.085 0.915 26 C -0.120 4.120 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.015 0.985 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -5.313 9.539 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.567 4.567 6 H 0.069 0.931 7 C -0.165 4.165 8 N -0.528 5.528 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.270 5.270 14 C -0.105 4.105 15 C -0.030 4.030 16 C -0.165 4.165 17 H 0.116 0.884 18 C -0.199 4.199 19 C -0.131 4.131 20 H 0.133 0.867 21 C -0.140 4.140 22 H 0.121 0.879 23 C -0.192 4.192 24 C -0.181 4.181 25 H 0.104 0.896 26 C -0.177 4.177 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.286 -4.786 9.504 14.800 hybrid contribution -1.018 -0.522 -0.997 1.518 sum 9.268 -5.308 8.506 13.654 Atomic orbital electron populations 1.21750 0.95705 0.96797 1.02964 1.22090 0.96855 0.99741 0.97731 1.19156 0.82581 0.91048 0.95900 0.97355 1.21127 0.91696 1.40640 1.03232 0.93074 1.25354 0.96728 0.94601 0.99820 1.70323 1.02477 1.46967 1.33050 0.86074 0.76957 0.78600 0.82800 1.19841 1.20985 1.20188 1.62164 1.10005 1.52212 1.02664 1.22154 0.98217 0.93918 0.96181 1.21534 0.94708 0.96402 0.90357 1.22270 0.94151 1.00807 0.99288 0.88410 1.23147 0.99512 0.95379 1.01892 1.21889 1.00521 1.02364 0.88365 0.86659 1.21792 0.97689 0.97817 0.96711 0.87929 1.23225 1.00822 1.02591 0.92525 1.22337 0.90584 1.00863 1.04321 0.89636 1.21324 0.95948 0.99273 1.01124 0.95888 0.94384 0.92391 0.94114 0.95220 0.92935 0.93009 0.96681 0.91292 0.92187 0.96256 0.89236 0.87425 0.87473 0.88185 0.91040 0.92525 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.46 8.25 71.98 0.59 -4.86 16 2 C -0.12 -5.80 4.48 30.59 0.14 -5.67 16 3 C 0.22 11.15 1.91 44.17 0.08 11.23 16 4 H 0.01 0.49 7.67 -2.39 -0.02 0.47 16 5 C -0.53 -29.13 7.91 25.60 0.20 -28.92 16 6 H 0.05 2.87 7.01 -2.91 -0.02 2.85 16 7 C 0.04 1.95 3.52 84.66 0.30 2.25 16 8 N -0.89 -49.85 10.09 21.45 0.22 -49.63 16 9 Si 0.93 43.09 29.60 68.60 2.03 45.12 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.55 -23.82 4.65 -901.49 -4.20 -28.02 16 14 C 0.04 1.70 8.65 127.69 1.10 2.80 16 15 C 0.10 3.58 3.64 86.30 0.31 3.90 16 16 C -0.15 -4.35 5.06 -10.79 -0.05 -4.41 16 17 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 18 C -0.16 -3.81 9.90 30.60 0.30 -3.51 16 19 C -0.11 -2.68 5.87 -10.79 -0.06 -2.75 16 20 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 21 C -0.12 -2.83 4.97 -10.79 -0.05 -2.88 16 22 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 23 C -0.15 -3.07 9.90 30.62 0.30 -2.77 16 24 C -0.16 -4.17 4.32 -10.77 -0.05 -4.21 16 25 H 0.09 2.58 7.31 -2.39 -0.02 2.56 16 26 C -0.12 -3.01 10.19 71.98 0.73 -2.28 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 1.91 7.53 -2.38 -0.02 1.89 16 29 H 0.06 3.00 4.97 -2.39 -0.01 2.99 16 30 H 0.04 1.88 6.77 -2.39 -0.02 1.87 16 31 H 0.03 1.28 6.79 -2.39 -0.02 1.26 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.05 2.17 6.76 -2.38 -0.02 2.15 16 34 H 0.01 0.57 6.38 -2.39 -0.02 0.55 16 35 H 0.07 2.30 7.41 -2.39 -0.02 2.28 16 36 H 0.06 2.37 5.30 -2.39 -0.01 2.36 16 37 H 0.02 0.71 6.87 -2.39 -0.02 0.69 16 38 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.11 1.77 8.05 -2.39 -0.02 1.75 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.46 7.90 -2.39 -0.02 1.45 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -57.58 332.42 2.85 -54.73 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.94 Total: 19.86 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.86 Total: -42.07 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.98 Total: -77.65 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -57.58 2.85 -54.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.169 kcal (2) G-P(sol) polarization free energy of solvation -57.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds